HEADER HYDROLASE 09-SEP-04 1WPN TITLE CRYSTAL STRUCTURE OF THE N-TERMINAL CORE OF BACILLUS SUBTILIS TITLE 2 INORGANIC PYROPHOSPHATASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANGANESE-DEPENDENT INORGANIC PYROPHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 SYNONYM: PYROPHOSPHATE PHOSPHO-HYDROLASE, PPASE; COMPND 6 EC: 3.6.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-3A KEYWDS INORGANIC PYROPHOSPHATASE, METAL BINDING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR I.P.FABRICHNIY,L.LEHTIO,A.SALMINEN,A.A.BAYKOV,R.LAHTI,A.GOLDMAN REVDAT 4 13-MAR-24 1WPN 1 REMARK LINK REVDAT 3 11-OCT-17 1WPN 1 REMARK REVDAT 2 24-FEB-09 1WPN 1 VERSN REVDAT 1 23-NOV-04 1WPN 0 JRNL AUTH I.P.FABRICHNIY,L.LEHTIO,A.SALMINEN,A.B.ZYRYANOV,A.A.BAYKOV, JRNL AUTH 2 R.LAHTI,A.GOLDMAN JRNL TITL STRUCTURAL STUDIES OF METAL IONS IN FAMILY II JRNL TITL 2 PYROPHOSPHATASES: THE REQUIREMENT FOR A JANUS ION JRNL REF BIOCHEMISTRY V. 43 14403 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15533045 JRNL DOI 10.1021/BI0484973 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 97706 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.139 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5143 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7065 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 372 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2910 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 512 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.46000 REMARK 3 B22 (A**2) : -0.60000 REMARK 3 B33 (A**2) : 0.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.20000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.043 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.042 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.027 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.650 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.968 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3134 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4269 ; 1.589 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 407 ; 5.702 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 481 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2417 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1589 ; 0.191 ; 0.100 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 750 ; 0.111 ; 0.100 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 35 ; 0.190 ; 0.100 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 38 ; 0.124 ; 0.100 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1970 ; 1.683 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3200 ; 2.457 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1164 ; 3.340 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1069 ; 5.082 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3134 ; 1.561 ; 2.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 516 ; 4.998 ; 2.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3077 ; 4.482 ; 2.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WPN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-SEP-04. REMARK 100 THE DEPOSITION ID IS D_1000023856. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PRODC REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 102851 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, AMMONIUM SULPHATE, PEG-400, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.48500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 82 -169.44 -101.24 REMARK 500 ASN B 77 -30.68 -141.19 REMARK 500 SER B 82 -169.85 -100.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 601 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 9 NE2 REMARK 620 2 ASP A 13 OD1 90.7 REMARK 620 3 ASP A 13 OD2 84.0 52.9 REMARK 620 4 ASP A 75 OD1 85.3 137.2 84.3 REMARK 620 5 HOH A 704 O 175.0 93.4 100.8 93.6 REMARK 620 6 HOH A 772 O 84.5 116.8 164.3 105.3 91.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 602 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 15 OD2 REMARK 620 2 ASP A 75 OD2 82.7 REMARK 620 3 HIS A 97 NE2 104.6 90.0 REMARK 620 4 ASP A 149 OD2 85.4 167.3 97.3 REMARK 620 5 HOH A 704 O 127.7 93.1 127.6 90.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 603 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 9 NE2 REMARK 620 2 ASP B 13 OD1 89.2 REMARK 620 3 ASP B 13 OD2 85.4 52.8 REMARK 620 4 ASP B 75 OD1 86.3 138.7 86.0 REMARK 620 5 HOH B 605 O 174.2 94.4 100.4 93.9 REMARK 620 6 HOH B 665 O 84.1 113.8 163.1 106.5 90.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 604 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 15 OD1 REMARK 620 2 ASP B 75 OD2 82.2 REMARK 620 3 HIS B 97 NE2 105.0 89.5 REMARK 620 4 ASP B 149 OD2 85.2 167.3 95.7 REMARK 620 5 HOH B 605 O 130.3 94.2 124.6 92.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 703 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1WPM RELATED DB: PDB REMARK 900 B. SUBTILIS PPASE WITHOUT METALS REMARK 900 RELATED ID: 1WPP RELATED DB: PDB REMARK 900 STREPTOCOCCUS GORDONII PPASE COMPLEXED WITH ZINC DBREF 1WPN A 1 188 UNP P37487 PPAC_BACSU 1 188 DBREF 1WPN B 1 188 UNP P37487 PPAC_BACSU 1 188 SEQRES 1 A 188 MET GLU LYS ILE LEU ILE PHE GLY HIS GLN ASN PRO ASP SEQRES 2 A 188 THR ASP THR ILE CYS SER ALA ILE ALA TYR ALA ASP LEU SEQRES 3 A 188 LYS ASN LYS LEU GLY PHE ASN ALA GLU PRO VAL ARG LEU SEQRES 4 A 188 GLY GLN VAL ASN GLY GLU THR GLN TYR ALA LEU ASP TYR SEQRES 5 A 188 PHE LYS GLN GLU SER PRO ARG LEU VAL GLU THR ALA ALA SEQRES 6 A 188 ASN GLU VAL ASN GLY VAL ILE LEU VAL ASP HIS ASN GLU SEQRES 7 A 188 ARG GLN GLN SER ILE LYS ASP ILE GLU GLU VAL GLN VAL SEQRES 8 A 188 LEU GLU VAL ILE ASP HIS HIS ARG ILE ALA ASN PHE GLU SEQRES 9 A 188 THR ALA GLU PRO LEU TYR TYR ARG ALA GLU PRO VAL GLY SEQRES 10 A 188 CYS THR ALA THR ILE LEU ASN LYS MET TYR LYS GLU ASN SEQRES 11 A 188 ASN VAL LYS ILE GLU LYS GLU ILE ALA GLY LEU MET LEU SEQRES 12 A 188 SER ALA ILE ILE SER ASP SER LEU LEU PHE LYS SER PRO SEQRES 13 A 188 THR CYS THR ASP GLN ASP VAL ALA ALA ALA LYS GLU LEU SEQRES 14 A 188 ALA GLU ILE ALA GLY VAL ASP ALA GLU GLU TYR GLY LEU SEQRES 15 A 188 ASN MET LEU LYS ALA GLY SEQRES 1 B 188 MET GLU LYS ILE LEU ILE PHE GLY HIS GLN ASN PRO ASP SEQRES 2 B 188 THR ASP THR ILE CYS SER ALA ILE ALA TYR ALA ASP LEU SEQRES 3 B 188 LYS ASN LYS LEU GLY PHE ASN ALA GLU PRO VAL ARG LEU SEQRES 4 B 188 GLY GLN VAL ASN GLY GLU THR GLN TYR ALA LEU ASP TYR SEQRES 5 B 188 PHE LYS GLN GLU SER PRO ARG LEU VAL GLU THR ALA ALA SEQRES 6 B 188 ASN GLU VAL ASN GLY VAL ILE LEU VAL ASP HIS ASN GLU SEQRES 7 B 188 ARG GLN GLN SER ILE LYS ASP ILE GLU GLU VAL GLN VAL SEQRES 8 B 188 LEU GLU VAL ILE ASP HIS HIS ARG ILE ALA ASN PHE GLU SEQRES 9 B 188 THR ALA GLU PRO LEU TYR TYR ARG ALA GLU PRO VAL GLY SEQRES 10 B 188 CYS THR ALA THR ILE LEU ASN LYS MET TYR LYS GLU ASN SEQRES 11 B 188 ASN VAL LYS ILE GLU LYS GLU ILE ALA GLY LEU MET LEU SEQRES 12 B 188 SER ALA ILE ILE SER ASP SER LEU LEU PHE LYS SER PRO SEQRES 13 B 188 THR CYS THR ASP GLN ASP VAL ALA ALA ALA LYS GLU LEU SEQRES 14 B 188 ALA GLU ILE ALA GLY VAL ASP ALA GLU GLU TYR GLY LEU SEQRES 15 B 188 ASN MET LEU LYS ALA GLY HET MN A 601 1 HET MN A 602 1 HET SO4 A 701 5 HET SO4 A 702 5 HET SO4 A 703 5 HET MN B 603 1 HET MN B 604 1 HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION FORMUL 3 MN 4(MN 2+) FORMUL 5 SO4 3(O4 S 2-) FORMUL 10 HOH *512(H2 O) HELIX 1 1 ASP A 13 LEU A 30 1 18 HELIX 2 2 ASN A 43 PHE A 53 1 11 HELIX 3 3 GLU A 78 SER A 82 5 5 HELIX 4 4 ASP A 85 VAL A 89 5 5 HELIX 5 5 CYS A 118 ASN A 130 1 13 HELIX 6 6 GLU A 135 LEU A 151 1 17 HELIX 7 7 THR A 159 GLY A 174 1 16 HELIX 8 8 ASP A 176 GLY A 188 1 13 HELIX 9 9 ASP B 13 LEU B 30 1 18 HELIX 10 10 ASN B 43 PHE B 53 1 11 HELIX 11 11 GLU B 78 SER B 82 5 5 HELIX 12 12 ASP B 85 VAL B 89 5 5 HELIX 13 13 CYS B 118 ASN B 130 1 13 HELIX 14 14 GLU B 135 LEU B 151 1 17 HELIX 15 15 THR B 159 GLY B 174 1 16 HELIX 16 16 ASP B 176 GLY B 188 1 13 SHEET 1 A12 ARG A 59 LEU A 60 0 SHEET 2 A12 ALA A 34 ARG A 38 1 N ARG A 38 O ARG A 59 SHEET 3 A12 ILE A 4 PHE A 7 1 N ILE A 6 O VAL A 37 SHEET 4 A12 GLY A 70 VAL A 74 1 O ILE A 72 N LEU A 5 SHEET 5 A12 GLN A 90 ASP A 96 1 O LEU A 92 N VAL A 71 SHEET 6 A12 TYR A 110 ALA A 113 1 O ARG A 112 N VAL A 94 SHEET 7 A12 TYR B 110 ALA B 113 -1 O TYR B 111 N ALA A 113 SHEET 8 A12 GLN B 90 ASP B 96 1 N VAL B 94 O ARG B 112 SHEET 9 A12 GLY B 70 VAL B 74 1 N VAL B 71 O LEU B 92 SHEET 10 A12 ILE B 4 PHE B 7 1 N LEU B 5 O ILE B 72 SHEET 11 A12 ALA B 34 ARG B 38 1 O VAL B 37 N ILE B 6 SHEET 12 A12 ARG B 59 LEU B 60 1 O ARG B 59 N ARG B 38 LINK NE2 HIS A 9 MN MN A 601 1555 1555 2.25 LINK OD1 ASP A 13 MN MN A 601 1555 1555 2.13 LINK OD2 ASP A 13 MN MN A 601 1555 1555 2.66 LINK OD2 ASP A 15 MN MN A 602 1555 1555 2.13 LINK OD1 ASP A 75 MN MN A 601 1555 1555 2.16 LINK OD2 ASP A 75 MN MN A 602 1555 1555 2.17 LINK NE2 HIS A 97 MN MN A 602 1555 1555 2.19 LINK OD2 ASP A 149 MN MN A 602 1555 1555 2.17 LINK MN MN A 601 O HOH A 704 1555 1555 2.11 LINK MN MN A 601 O HOH A 772 1555 1555 2.15 LINK MN MN A 602 O HOH A 704 1555 1555 2.03 LINK NE2 HIS B 9 MN MN B 603 1555 1555 2.27 LINK OD1 ASP B 13 MN MN B 603 1555 1555 2.17 LINK OD2 ASP B 13 MN MN B 603 1555 1555 2.64 LINK OD1 ASP B 15 MN MN B 604 1555 1555 2.07 LINK OD1 ASP B 75 MN MN B 603 1555 1555 2.17 LINK OD2 ASP B 75 MN MN B 604 1555 1555 2.15 LINK NE2 HIS B 97 MN MN B 604 1555 1555 2.20 LINK OD2 ASP B 149 MN MN B 604 1555 1555 2.17 LINK MN MN B 603 O HOH B 605 1555 1555 2.12 LINK MN MN B 603 O HOH B 665 1555 1555 2.14 LINK MN MN B 604 O HOH B 605 1555 1555 2.04 SITE 1 AC1 6 HIS A 9 ASP A 13 ASP A 75 MN A 602 SITE 2 AC1 6 HOH A 704 HOH A 772 SITE 1 AC2 6 ASP A 15 ASP A 75 HIS A 97 ASP A 149 SITE 2 AC2 6 MN A 601 HOH A 704 SITE 1 AC3 6 HIS B 9 ASP B 13 ASP B 75 MN B 604 SITE 2 AC3 6 HOH B 605 HOH B 665 SITE 1 AC4 6 ASP B 15 ASP B 75 HIS B 97 ASP B 149 SITE 2 AC4 6 MN B 603 HOH B 605 SITE 1 AC5 9 GLN A 90 VAL A 91 THR A 105 ALA A 106 SITE 2 AC5 9 GLU A 107 HOH A 717 HOH A 802 HOH A 813 SITE 3 AC5 9 HOH A 881 SITE 1 AC6 5 GLN A 47 GLU A 56 SER A 57 HOH A 722 SITE 2 AC6 5 HOH A 899 SITE 1 AC7 4 ARG A 38 GLN A 41 HOH A 746 HOH A 806 CRYST1 48.140 60.970 74.060 90.00 99.99 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020773 0.000000 0.003657 0.00000 SCALE2 0.000000 0.016402 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013710 0.00000