HEADER RNA BINDING PROTEIN 13-SEP-04 1WPT TITLE CRYSTAL STRUCTURE OF HUTP, AN RNA BINDING ANTI-TERMINATION PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUT OPERON POSITIVE REGULATORY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HUTP; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET5A, PETHP4 KEYWDS HUTP, RNA BINDING, ANTITERMINATION, TRANSCRIPTION REGULATION, RNA KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.KUMAREVEL,H.MIZUNO,P.K.R.KUMAR REVDAT 7 25-OCT-23 1WPT 1 REMARK REVDAT 6 10-NOV-21 1WPT 1 SEQADV REVDAT 5 11-OCT-17 1WPT 1 REMARK REVDAT 4 13-JUL-11 1WPT 1 VERSN REVDAT 3 24-FEB-09 1WPT 1 VERSN REVDAT 2 25-OCT-05 1WPT 1 AUTHOR JRNL REMARK REVDAT 1 30-AUG-05 1WPT 0 JRNL AUTH T.KUMAREVEL,H.MIZUNO,P.K.R.KUMAR JRNL TITL CHARACTERIZATION OF THE METAL ION BINDING SITE IN THE JRNL TITL 2 ANTI-TERMINATOR PROTEIN, HUTP, OF BACILLUS SUBTILIS JRNL REF NUCLEIC ACIDS RES. V. 33 5494 2005 JRNL REFN ISSN 0305-1048 JRNL PMID 16192572 JRNL DOI 10.1093/NAR/GKI868 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.KUMAREVEL,Z.FUJIMOTO,P.KARTHE,M.ODA,H.MIZUNO,P.K.R.KUMAR REMARK 1 TITL CRYSTAL STRUCTURE OF ACTIVATED HUTP; AN RNA BINDING PROTEIN REMARK 1 TITL 2 THAT REGULATES TRANSCRIPTION OF THE HUT OPERON IN BACILLUS REMARK 1 TITL 3 SUBTILIS REMARK 1 REF STRUCTURE V. 12 1269 2004 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 15242603 REMARK 1 DOI 10.1016/J.STR.2004.05.005 REMARK 1 REFERENCE 2 REMARK 1 AUTH T.KUMAREVEL,S.C.GOPINATH,S.NISHIKAWA,H.MIZUNO,P.K.KUMAR REMARK 1 TITL IDENTIFICATION OF IMPORTANT CHEMICAL GROUPS OF THE HUT MRNA REMARK 1 TITL 2 FOR HUTP INTERACTIONS THAT REGULATE THE HUT OPERON IN REMARK 1 TITL 3 BACILLUS SUBTILIS REMARK 1 REF NUCLEIC ACIDS RES. V. 32 3904 2004 REMARK 1 REFN ISSN 0305-1048 REMARK 1 PMID 15273277 REMARK 1 DOI 10.1093/NAR/GKH725 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1778712.120 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 7492 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.200 REMARK 3 FREE R VALUE TEST SET COUNT : 542 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.012 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1202 REMARK 3 BIN R VALUE (WORKING SET) : 0.3300 REMARK 3 BIN FREE R VALUE : 0.4250 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 104 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.042 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2144 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 67 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 61.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM SIGMAA (A) : 0.37 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.50 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.48 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.890 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.020 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.670 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.050 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.370 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.31 REMARK 3 BSOL : 37.58 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : DNA-RNA_REP.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WPT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-SEP-04. REMARK 100 THE DEPOSITION ID IS D_1000023861. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9780 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8514 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.80 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1VEA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG2K, MME, HEPES, MGCL2, PH 7.4, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 47.70500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.70500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.70500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.70500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.70500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.70500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 47.70500 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 47.70500 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 47.70500 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 47.70500 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 47.70500 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 47.70500 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 47.70500 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 47.70500 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 47.70500 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 47.70500 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 47.70500 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 47.70500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HEXAMER GENERATED FROM THE REMARK 300 DIMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS:-1/2+Z, -1/2-X, -Y REMARK 300 AND -1/2-Y, -Z, 1/2+X REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 13030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 47.70500 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 143.11500 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 95.41000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 143.11500 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 95.41000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 -47.70500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 2 REMARK 465 LEU A 3 REMARK 465 HIS A 4 REMARK 465 THR B 2 REMARK 465 LEU B 3 REMARK 465 HIS B 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 5 CG CD CE NZ REMARK 470 LYS A 60 CG CD CE NZ REMARK 470 GLU A 113 CG CD OE1 OE2 REMARK 470 SER A 114 OG REMARK 470 GLU A 115 CG CD OE1 OE2 REMARK 470 ILE A 133 CG1 CG2 CD1 REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 LYS B 5 CG CD CE NZ REMARK 470 LYS B 49 CG CD CE NZ REMARK 470 TYR B 69 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 88 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 96 CG CD1 CD2 REMARK 470 LEU B 97 CG CD1 CD2 REMARK 470 GLU B 113 CG CD OE1 OE2 REMARK 470 SER B 114 OG REMARK 470 GLU B 115 CG CD OE1 OE2 REMARK 470 GLU B 117 CG CD OE1 OE2 REMARK 470 LYS B 134 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 118 N - CA - C ANGL. DEV. = -20.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 45.45 -97.70 REMARK 500 GLU A 117 93.29 -61.42 REMARK 500 ILE A 133 -72.44 -75.11 REMARK 500 LYS A 134 -71.61 -86.60 REMARK 500 ARG B 7 51.14 -106.97 REMARK 500 CYS B 38 114.90 179.54 REMARK 500 ALA B 47 -71.47 -43.73 REMARK 500 SER B 66 92.92 -69.95 REMARK 500 GLU B 67 -57.47 -167.35 REMARK 500 THR B 87 54.62 -96.56 REMARK 500 ARG B 88 -71.17 -39.55 REMARK 500 SER B 95 66.92 -111.84 REMARK 500 LEU B 96 51.22 -145.62 REMARK 500 LEU B 97 72.72 41.02 REMARK 500 SER B 114 -66.23 -138.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1VEA RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH L-HISTIDINE ANALOG REMARK 900 RELATED ID: 1WMQ RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH METAL IONS, L-HISTIDINE AND 21-MER REMARK 900 RNA REMARK 900 RELATED ID: 1WPS RELATED DB: PDB REMARK 900 THE SAME PROTEIN CRYSTALLIZED IN THE PRESENCE OF A CHELATING AGENT, REMARK 900 EDTA REMARK 900 RELATED ID: 1WPU RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH L-HISTIDINE AND 21-MER RNA REMARK 900 CONTAINING GAG REPEATS IN THE PRESENCE OF MGCL2 DBREF 1WPT A 2 148 UNP P10943 HUTP_BACSU 1 147 DBREF 1WPT B 2 148 UNP P10943 HUTP_BACSU 1 147 SEQADV 1WPT ILE A 51 UNP P10943 VAL 50 ENGINEERED MUTATION SEQADV 1WPT ILE B 51 UNP P10943 VAL 50 ENGINEERED MUTATION SEQRES 1 A 147 THR LEU HIS LYS GLU ARG ARG ILE GLY ARG LEU SER VAL SEQRES 2 A 147 LEU LEU LEU LEU ASN GLU ALA GLU GLU SER THR GLN VAL SEQRES 3 A 147 GLU GLU LEU GLU ARG ASP GLY TRP LYS VAL CYS LEU GLY SEQRES 4 A 147 LYS VAL GLY SER MET ASP ALA HIS LYS VAL ILE ALA ALA SEQRES 5 A 147 ILE GLU THR ALA SER LYS LYS SER GLY VAL ILE GLN SER SEQRES 6 A 147 GLU GLY TYR ARG GLU SER HIS ALA LEU TYR HIS ALA THR SEQRES 7 A 147 MET GLU ALA LEU HIS GLY VAL THR ARG GLY GLU MET LEU SEQRES 8 A 147 LEU GLY SER LEU LEU ARG THR VAL GLY LEU ARG PHE ALA SEQRES 9 A 147 VAL LEU ARG GLY ASN PRO TYR GLU SER GLU ALA GLU GLY SEQRES 10 A 147 ASP TRP ILE ALA VAL SER LEU TYR GLY THR ILE GLY ALA SEQRES 11 A 147 PRO ILE LYS GLY LEU GLU HIS GLU THR PHE GLY VAL GLY SEQRES 12 A 147 ILE ASN HIS ILE SEQRES 1 B 147 THR LEU HIS LYS GLU ARG ARG ILE GLY ARG LEU SER VAL SEQRES 2 B 147 LEU LEU LEU LEU ASN GLU ALA GLU GLU SER THR GLN VAL SEQRES 3 B 147 GLU GLU LEU GLU ARG ASP GLY TRP LYS VAL CYS LEU GLY SEQRES 4 B 147 LYS VAL GLY SER MET ASP ALA HIS LYS VAL ILE ALA ALA SEQRES 5 B 147 ILE GLU THR ALA SER LYS LYS SER GLY VAL ILE GLN SER SEQRES 6 B 147 GLU GLY TYR ARG GLU SER HIS ALA LEU TYR HIS ALA THR SEQRES 7 B 147 MET GLU ALA LEU HIS GLY VAL THR ARG GLY GLU MET LEU SEQRES 8 B 147 LEU GLY SER LEU LEU ARG THR VAL GLY LEU ARG PHE ALA SEQRES 9 B 147 VAL LEU ARG GLY ASN PRO TYR GLU SER GLU ALA GLU GLY SEQRES 10 B 147 ASP TRP ILE ALA VAL SER LEU TYR GLY THR ILE GLY ALA SEQRES 11 B 147 PRO ILE LYS GLY LEU GLU HIS GLU THR PHE GLY VAL GLY SEQRES 12 B 147 ILE ASN HIS ILE FORMUL 3 HOH *67(H2 O) HELIX 1 1 ARG A 8 ASN A 19 1 12 HELIX 2 2 GLU A 22 ARG A 32 1 11 HELIX 3 3 ASP A 46 LYS A 60 1 15 HELIX 4 4 GLY A 68 THR A 87 1 20 HELIX 5 5 GLU A 90 LEU A 97 1 8 HELIX 6 6 ARG B 8 ASN B 19 1 12 HELIX 7 7 GLU B 22 ASP B 33 1 12 HELIX 8 8 ASP B 46 SER B 61 1 16 HELIX 9 9 GLY B 68 THR B 87 1 20 SHEET 1 A 4 TRP A 35 VAL A 42 0 SHEET 2 A 4 VAL A 100 GLY A 109 -1 O LEU A 102 N VAL A 42 SHEET 3 A 4 TRP A 120 ILE A 129 -1 O TYR A 126 N ARG A 103 SHEET 4 A 4 HIS A 138 HIS A 147 -1 O THR A 140 N GLY A 127 SHEET 1 B 4 TRP B 35 VAL B 42 0 SHEET 2 B 4 VAL B 100 GLY B 109 -1 O LEU B 102 N VAL B 42 SHEET 3 B 4 TRP B 120 GLY B 130 -1 O TRP B 120 N GLY B 109 SHEET 4 B 4 GLU B 137 HIS B 147 -1 O HIS B 138 N ILE B 129 CRYST1 95.410 95.410 95.410 90.00 90.00 90.00 P 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010481 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010481 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010481 0.00000