data_1WRD # _entry.id 1WRD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1WRD pdb_00001wrd 10.2210/pdb1wrd/pdb RCSB RCSB023910 ? ? WWPDB D_1000023910 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-10-11 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1WRD _pdbx_database_status.recvd_initial_deposition_date 2004-10-14 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Akutsu, M.' 1 'Kawasaki, M.' 2 'Katoh, Y.' 3 'Shiba, T.' 4 'Yamaguchi, Y.' 5 'Kato, R.' 6 'Kato, K.' 7 'Nakayama, K.' 8 'Wakatsuki, S.' 9 # _citation.id primary _citation.title 'Structural basis for recognition of ubiquitinated cargo by Tom1-GAT domain.' _citation.journal_abbrev 'Febs Lett.' _citation.journal_volume 579 _citation.page_first 5385 _citation.page_last 5391 _citation.year 2005 _citation.journal_id_ASTM FEBLAL _citation.country NE _citation.journal_id_ISSN 0014-5793 _citation.journal_id_CSD 0165 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16199040 _citation.pdbx_database_id_DOI 10.1016/j.febslet.2005.08.076 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Akutsu, M.' 1 ? primary 'Kawasaki, M.' 2 ? primary 'Katoh, Y.' 3 ? primary 'Shiba, T.' 4 ? primary 'Yamaguchi, Y.' 5 ? primary 'Kato, R.' 6 ? primary 'Kato, K.' 7 ? primary 'Nakayama, K.' 8 ? primary 'Wakatsuki, S.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Target of Myb protein 1' 11802.447 1 ? ? 'GAT domain' ? 2 polymer nat Ubiquitin 8576.831 1 ? ? ? ? 3 water nat water 18.015 289 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Tom1 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GPLGSEQIGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQIANEQLTEELLIVND NLNNVFLRHERFERFRTGQTTKA ; ;GPLGSEQIGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQIANEQLTEELLIVND NLNNVFLRHERFERFRTGQTTKA ; A ? 2 'polypeptide(L)' no no MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG B ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 GLU n 1 7 GLN n 1 8 ILE n 1 9 GLY n 1 10 LYS n 1 11 LEU n 1 12 ARG n 1 13 SER n 1 14 GLU n 1 15 LEU n 1 16 GLU n 1 17 MET n 1 18 VAL n 1 19 SER n 1 20 GLY n 1 21 ASN n 1 22 VAL n 1 23 ARG n 1 24 VAL n 1 25 MET n 1 26 SER n 1 27 GLU n 1 28 MET n 1 29 LEU n 1 30 THR n 1 31 GLU n 1 32 LEU n 1 33 VAL n 1 34 PRO n 1 35 THR n 1 36 GLN n 1 37 ALA n 1 38 GLU n 1 39 PRO n 1 40 ALA n 1 41 ASP n 1 42 LEU n 1 43 GLU n 1 44 LEU n 1 45 LEU n 1 46 GLN n 1 47 GLU n 1 48 LEU n 1 49 ASN n 1 50 ARG n 1 51 THR n 1 52 CYS n 1 53 ARG n 1 54 ALA n 1 55 MET n 1 56 GLN n 1 57 GLN n 1 58 ARG n 1 59 VAL n 1 60 LEU n 1 61 GLU n 1 62 LEU n 1 63 ILE n 1 64 PRO n 1 65 GLN n 1 66 ILE n 1 67 ALA n 1 68 ASN n 1 69 GLU n 1 70 GLN n 1 71 LEU n 1 72 THR n 1 73 GLU n 1 74 GLU n 1 75 LEU n 1 76 LEU n 1 77 ILE n 1 78 VAL n 1 79 ASN n 1 80 ASP n 1 81 ASN n 1 82 LEU n 1 83 ASN n 1 84 ASN n 1 85 VAL n 1 86 PHE n 1 87 LEU n 1 88 ARG n 1 89 HIS n 1 90 GLU n 1 91 ARG n 1 92 PHE n 1 93 GLU n 1 94 ARG n 1 95 PHE n 1 96 ARG n 1 97 THR n 1 98 GLY n 1 99 GLN n 1 100 THR n 1 101 THR n 1 102 LYS n 1 103 ALA n 2 1 MET n 2 2 GLN n 2 3 ILE n 2 4 PHE n 2 5 VAL n 2 6 LYS n 2 7 THR n 2 8 LEU n 2 9 THR n 2 10 GLY n 2 11 LYS n 2 12 THR n 2 13 ILE n 2 14 THR n 2 15 LEU n 2 16 GLU n 2 17 VAL n 2 18 GLU n 2 19 PRO n 2 20 SER n 2 21 ASP n 2 22 THR n 2 23 ILE n 2 24 GLU n 2 25 ASN n 2 26 VAL n 2 27 LYS n 2 28 ALA n 2 29 LYS n 2 30 ILE n 2 31 GLN n 2 32 ASP n 2 33 LYS n 2 34 GLU n 2 35 GLY n 2 36 ILE n 2 37 PRO n 2 38 PRO n 2 39 ASP n 2 40 GLN n 2 41 GLN n 2 42 ARG n 2 43 LEU n 2 44 ILE n 2 45 PHE n 2 46 ALA n 2 47 GLY n 2 48 LYS n 2 49 GLN n 2 50 LEU n 2 51 GLU n 2 52 ASP n 2 53 GLY n 2 54 ARG n 2 55 THR n 2 56 LEU n 2 57 SER n 2 58 ASP n 2 59 TYR n 2 60 ASN n 2 61 ILE n 2 62 GLN n 2 63 LYS n 2 64 GLU n 2 65 SER n 2 66 THR n 2 67 LEU n 2 68 HIS n 2 69 LEU n 2 70 VAL n 2 71 LEU n 2 72 ARG n 2 73 LEU n 2 74 ARG n 2 75 GLY n 2 76 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain DL41 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX-4T-2 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _entity_src_nat.entity_id 2 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name cattle _entity_src_nat.pdbx_organism_scientific 'Bos taurus' _entity_src_nat.pdbx_ncbi_taxonomy_id 9913 _entity_src_nat.genus Bos _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue 'red blood cells' _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 210 210 GLY GLY A . n A 1 2 PRO 2 211 211 PRO PRO A . n A 1 3 LEU 3 212 212 LEU LEU A . n A 1 4 GLY 4 213 213 GLY GLY A . n A 1 5 SER 5 214 214 SER SER A . n A 1 6 GLU 6 215 215 GLU GLU A . n A 1 7 GLN 7 216 216 GLN GLN A . n A 1 8 ILE 8 217 217 ILE ILE A . n A 1 9 GLY 9 218 218 GLY GLY A . n A 1 10 LYS 10 219 219 LYS LYS A . n A 1 11 LEU 11 220 220 LEU LEU A . n A 1 12 ARG 12 221 221 ARG ARG A . n A 1 13 SER 13 222 222 SER SER A . n A 1 14 GLU 14 223 223 GLU GLU A . n A 1 15 LEU 15 224 224 LEU LEU A . n A 1 16 GLU 16 225 225 GLU GLU A . n A 1 17 MET 17 226 226 MET MET A . n A 1 18 VAL 18 227 227 VAL VAL A . n A 1 19 SER 19 228 228 SER SER A . n A 1 20 GLY 20 229 229 GLY GLY A . n A 1 21 ASN 21 230 230 ASN ASN A . n A 1 22 VAL 22 231 231 VAL VAL A . n A 1 23 ARG 23 232 232 ARG ARG A . n A 1 24 VAL 24 233 233 VAL VAL A . n A 1 25 MET 25 234 234 MET MET A . n A 1 26 SER 26 235 235 SER SER A . n A 1 27 GLU 27 236 236 GLU GLU A . n A 1 28 MET 28 237 237 MET MET A . n A 1 29 LEU 29 238 238 LEU LEU A . n A 1 30 THR 30 239 239 THR THR A . n A 1 31 GLU 31 240 240 GLU GLU A . n A 1 32 LEU 32 241 241 LEU LEU A . n A 1 33 VAL 33 242 242 VAL VAL A . n A 1 34 PRO 34 243 243 PRO PRO A . n A 1 35 THR 35 244 244 THR THR A . n A 1 36 GLN 36 245 245 GLN GLN A . n A 1 37 ALA 37 246 246 ALA ALA A . n A 1 38 GLU 38 247 247 GLU GLU A . n A 1 39 PRO 39 248 248 PRO PRO A . n A 1 40 ALA 40 249 249 ALA ALA A . n A 1 41 ASP 41 250 250 ASP ASP A . n A 1 42 LEU 42 251 251 LEU LEU A . n A 1 43 GLU 43 252 252 GLU GLU A . n A 1 44 LEU 44 253 253 LEU LEU A . n A 1 45 LEU 45 254 254 LEU LEU A . n A 1 46 GLN 46 255 255 GLN GLN A . n A 1 47 GLU 47 256 256 GLU GLU A . n A 1 48 LEU 48 257 257 LEU LEU A . n A 1 49 ASN 49 258 258 ASN ASN A . n A 1 50 ARG 50 259 259 ARG ARG A . n A 1 51 THR 51 260 260 THR THR A . n A 1 52 CYS 52 261 261 CYS CYS A . n A 1 53 ARG 53 262 262 ARG ARG A . n A 1 54 ALA 54 263 263 ALA ALA A . n A 1 55 MET 55 264 264 MET MET A . n A 1 56 GLN 56 265 265 GLN GLN A . n A 1 57 GLN 57 266 266 GLN GLN A . n A 1 58 ARG 58 267 267 ARG ARG A . n A 1 59 VAL 59 268 268 VAL VAL A . n A 1 60 LEU 60 269 269 LEU LEU A . n A 1 61 GLU 61 270 270 GLU GLU A . n A 1 62 LEU 62 271 271 LEU LEU A . n A 1 63 ILE 63 272 272 ILE ILE A . n A 1 64 PRO 64 273 273 PRO PRO A . n A 1 65 GLN 65 274 274 GLN GLN A . n A 1 66 ILE 66 275 275 ILE ILE A . n A 1 67 ALA 67 276 276 ALA ALA A . n A 1 68 ASN 68 277 277 ASN ASN A . n A 1 69 GLU 69 278 278 GLU GLU A . n A 1 70 GLN 70 279 279 GLN GLN A . n A 1 71 LEU 71 280 280 LEU LEU A . n A 1 72 THR 72 281 281 THR THR A . n A 1 73 GLU 73 282 282 GLU GLU A . n A 1 74 GLU 74 283 283 GLU GLU A . n A 1 75 LEU 75 284 284 LEU LEU A . n A 1 76 LEU 76 285 285 LEU LEU A . n A 1 77 ILE 77 286 286 ILE ILE A . n A 1 78 VAL 78 287 287 VAL VAL A . n A 1 79 ASN 79 288 288 ASN ASN A . n A 1 80 ASP 80 289 289 ASP ASP A . n A 1 81 ASN 81 290 290 ASN ASN A . n A 1 82 LEU 82 291 291 LEU LEU A . n A 1 83 ASN 83 292 292 ASN ASN A . n A 1 84 ASN 84 293 293 ASN ASN A . n A 1 85 VAL 85 294 294 VAL VAL A . n A 1 86 PHE 86 295 295 PHE PHE A . n A 1 87 LEU 87 296 296 LEU LEU A . n A 1 88 ARG 88 297 297 ARG ARG A . n A 1 89 HIS 89 298 298 HIS HIS A . n A 1 90 GLU 90 299 299 GLU GLU A . n A 1 91 ARG 91 300 300 ARG ARG A . n A 1 92 PHE 92 301 301 PHE PHE A . n A 1 93 GLU 93 302 302 GLU GLU A . n A 1 94 ARG 94 303 303 ARG ARG A . n A 1 95 PHE 95 304 304 PHE PHE A . n A 1 96 ARG 96 305 305 ARG ARG A . n A 1 97 THR 97 306 306 THR THR A . n A 1 98 GLY 98 307 307 GLY GLY A . n A 1 99 GLN 99 308 ? ? ? A . n A 1 100 THR 100 309 ? ? ? A . n A 1 101 THR 101 310 ? ? ? A . n A 1 102 LYS 102 311 ? ? ? A . n A 1 103 ALA 103 312 ? ? ? A . n B 2 1 MET 1 1 1 MET MET B . n B 2 2 GLN 2 2 2 GLN GLN B . n B 2 3 ILE 3 3 3 ILE ILE B . n B 2 4 PHE 4 4 4 PHE PHE B . n B 2 5 VAL 5 5 5 VAL VAL B . n B 2 6 LYS 6 6 6 LYS LYS B . n B 2 7 THR 7 7 7 THR THR B . n B 2 8 LEU 8 8 8 LEU LEU B . n B 2 9 THR 9 9 9 THR THR B . n B 2 10 GLY 10 10 10 GLY GLY B . n B 2 11 LYS 11 11 11 LYS LYS B . n B 2 12 THR 12 12 12 THR THR B . n B 2 13 ILE 13 13 13 ILE ILE B . n B 2 14 THR 14 14 14 THR THR B . n B 2 15 LEU 15 15 15 LEU LEU B . n B 2 16 GLU 16 16 16 GLU GLU B . n B 2 17 VAL 17 17 17 VAL VAL B . n B 2 18 GLU 18 18 18 GLU GLU B . n B 2 19 PRO 19 19 19 PRO PRO B . n B 2 20 SER 20 20 20 SER SER B . n B 2 21 ASP 21 21 21 ASP ASP B . n B 2 22 THR 22 22 22 THR THR B . n B 2 23 ILE 23 23 23 ILE ILE B . n B 2 24 GLU 24 24 24 GLU GLU B . n B 2 25 ASN 25 25 25 ASN ASN B . n B 2 26 VAL 26 26 26 VAL VAL B . n B 2 27 LYS 27 27 27 LYS LYS B . n B 2 28 ALA 28 28 28 ALA ALA B . n B 2 29 LYS 29 29 29 LYS LYS B . n B 2 30 ILE 30 30 30 ILE ILE B . n B 2 31 GLN 31 31 31 GLN GLN B . n B 2 32 ASP 32 32 32 ASP ASP B . n B 2 33 LYS 33 33 33 LYS LYS B . n B 2 34 GLU 34 34 34 GLU GLU B . n B 2 35 GLY 35 35 35 GLY GLY B . n B 2 36 ILE 36 36 36 ILE ILE B . n B 2 37 PRO 37 37 37 PRO PRO B . n B 2 38 PRO 38 38 38 PRO PRO B . n B 2 39 ASP 39 39 39 ASP ASP B . n B 2 40 GLN 40 40 40 GLN GLN B . n B 2 41 GLN 41 41 41 GLN GLN B . n B 2 42 ARG 42 42 42 ARG ARG B . n B 2 43 LEU 43 43 43 LEU LEU B . n B 2 44 ILE 44 44 44 ILE ILE B . n B 2 45 PHE 45 45 45 PHE PHE B . n B 2 46 ALA 46 46 46 ALA ALA B . n B 2 47 GLY 47 47 47 GLY GLY B . n B 2 48 LYS 48 48 48 LYS LYS B . n B 2 49 GLN 49 49 49 GLN GLN B . n B 2 50 LEU 50 50 50 LEU LEU B . n B 2 51 GLU 51 51 51 GLU GLU B . n B 2 52 ASP 52 52 52 ASP ASP B . n B 2 53 GLY 53 53 53 GLY GLY B . n B 2 54 ARG 54 54 54 ARG ARG B . n B 2 55 THR 55 55 55 THR THR B . n B 2 56 LEU 56 56 56 LEU LEU B . n B 2 57 SER 57 57 57 SER SER B . n B 2 58 ASP 58 58 58 ASP ASP B . n B 2 59 TYR 59 59 59 TYR TYR B . n B 2 60 ASN 60 60 60 ASN ASN B . n B 2 61 ILE 61 61 61 ILE ILE B . n B 2 62 GLN 62 62 62 GLN GLN B . n B 2 63 LYS 63 63 63 LYS LYS B . n B 2 64 GLU 64 64 64 GLU GLU B . n B 2 65 SER 65 65 65 SER SER B . n B 2 66 THR 66 66 66 THR THR B . n B 2 67 LEU 67 67 67 LEU LEU B . n B 2 68 HIS 68 68 68 HIS HIS B . n B 2 69 LEU 69 69 69 LEU LEU B . n B 2 70 VAL 70 70 70 VAL VAL B . n B 2 71 LEU 71 71 71 LEU LEU B . n B 2 72 ARG 72 72 72 ARG ARG B . n B 2 73 LEU 73 73 73 LEU LEU B . n B 2 74 ARG 74 74 74 ARG ARG B . n B 2 75 GLY 75 75 75 GLY GLY B . n B 2 76 GLY 76 76 76 GLY GLY B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 313 6 HOH HOH A . C 3 HOH 2 314 10 HOH HOH A . C 3 HOH 3 315 11 HOH HOH A . C 3 HOH 4 316 12 HOH HOH A . C 3 HOH 5 317 15 HOH HOH A . C 3 HOH 6 318 35 HOH HOH A . C 3 HOH 7 319 40 HOH HOH A . C 3 HOH 8 320 53 HOH HOH A . C 3 HOH 9 321 58 HOH HOH A . C 3 HOH 10 322 59 HOH HOH A . C 3 HOH 11 323 60 HOH HOH A . C 3 HOH 12 324 63 HOH HOH A . C 3 HOH 13 325 64 HOH HOH A . C 3 HOH 14 326 67 HOH HOH A . C 3 HOH 15 327 90 HOH HOH A . C 3 HOH 16 328 94 HOH HOH A . C 3 HOH 17 329 95 HOH HOH A . C 3 HOH 18 330 96 HOH HOH A . C 3 HOH 19 331 98 HOH HOH A . C 3 HOH 20 332 99 HOH HOH A . C 3 HOH 21 333 100 HOH HOH A . C 3 HOH 22 334 101 HOH HOH A . C 3 HOH 23 335 102 HOH HOH A . C 3 HOH 24 336 103 HOH HOH A . C 3 HOH 25 337 104 HOH HOH A . C 3 HOH 26 338 105 HOH HOH A . C 3 HOH 27 339 106 HOH HOH A . C 3 HOH 28 340 107 HOH HOH A . C 3 HOH 29 341 108 HOH HOH A . C 3 HOH 30 342 109 HOH HOH A . C 3 HOH 31 343 110 HOH HOH A . C 3 HOH 32 344 111 HOH HOH A . C 3 HOH 33 345 112 HOH HOH A . C 3 HOH 34 346 113 HOH HOH A . C 3 HOH 35 347 114 HOH HOH A . C 3 HOH 36 348 115 HOH HOH A . C 3 HOH 37 349 116 HOH HOH A . C 3 HOH 38 350 117 HOH HOH A . C 3 HOH 39 351 118 HOH HOH A . C 3 HOH 40 352 119 HOH HOH A . C 3 HOH 41 353 120 HOH HOH A . C 3 HOH 42 354 121 HOH HOH A . C 3 HOH 43 355 122 HOH HOH A . C 3 HOH 44 356 123 HOH HOH A . C 3 HOH 45 357 124 HOH HOH A . C 3 HOH 46 358 125 HOH HOH A . C 3 HOH 47 359 126 HOH HOH A . C 3 HOH 48 360 127 HOH HOH A . C 3 HOH 49 361 128 HOH HOH A . C 3 HOH 50 362 129 HOH HOH A . C 3 HOH 51 363 130 HOH HOH A . C 3 HOH 52 364 131 HOH HOH A . C 3 HOH 53 365 132 HOH HOH A . C 3 HOH 54 366 133 HOH HOH A . C 3 HOH 55 367 134 HOH HOH A . C 3 HOH 56 368 135 HOH HOH A . C 3 HOH 57 369 136 HOH HOH A . C 3 HOH 58 370 137 HOH HOH A . C 3 HOH 59 371 138 HOH HOH A . C 3 HOH 60 372 139 HOH HOH A . C 3 HOH 61 373 140 HOH HOH A . C 3 HOH 62 374 141 HOH HOH A . C 3 HOH 63 375 142 HOH HOH A . C 3 HOH 64 376 143 HOH HOH A . C 3 HOH 65 377 144 HOH HOH A . C 3 HOH 66 378 145 HOH HOH A . C 3 HOH 67 379 146 HOH HOH A . C 3 HOH 68 380 147 HOH HOH A . C 3 HOH 69 381 148 HOH HOH A . C 3 HOH 70 382 149 HOH HOH A . C 3 HOH 71 383 150 HOH HOH A . C 3 HOH 72 384 151 HOH HOH A . C 3 HOH 73 385 152 HOH HOH A . C 3 HOH 74 386 153 HOH HOH A . C 3 HOH 75 387 154 HOH HOH A . C 3 HOH 76 388 155 HOH HOH A . C 3 HOH 77 389 156 HOH HOH A . C 3 HOH 78 390 157 HOH HOH A . C 3 HOH 79 391 158 HOH HOH A . C 3 HOH 80 392 159 HOH HOH A . C 3 HOH 81 393 160 HOH HOH A . C 3 HOH 82 394 161 HOH HOH A . C 3 HOH 83 395 162 HOH HOH A . C 3 HOH 84 396 163 HOH HOH A . C 3 HOH 85 397 164 HOH HOH A . C 3 HOH 86 398 165 HOH HOH A . C 3 HOH 87 399 166 HOH HOH A . C 3 HOH 88 400 167 HOH HOH A . C 3 HOH 89 401 168 HOH HOH A . C 3 HOH 90 402 169 HOH HOH A . C 3 HOH 91 403 170 HOH HOH A . C 3 HOH 92 404 171 HOH HOH A . C 3 HOH 93 405 172 HOH HOH A . C 3 HOH 94 406 173 HOH HOH A . C 3 HOH 95 407 174 HOH HOH A . C 3 HOH 96 408 175 HOH HOH A . C 3 HOH 97 409 176 HOH HOH A . C 3 HOH 98 410 177 HOH HOH A . C 3 HOH 99 411 178 HOH HOH A . C 3 HOH 100 412 179 HOH HOH A . C 3 HOH 101 413 180 HOH HOH A . C 3 HOH 102 414 206 HOH HOH A . C 3 HOH 103 415 207 HOH HOH A . C 3 HOH 104 416 208 HOH HOH A . C 3 HOH 105 417 220 HOH HOH A . C 3 HOH 106 418 221 HOH HOH A . C 3 HOH 107 419 222 HOH HOH A . C 3 HOH 108 420 223 HOH HOH A . C 3 HOH 109 421 224 HOH HOH A . C 3 HOH 110 422 225 HOH HOH A . C 3 HOH 111 423 226 HOH HOH A . C 3 HOH 112 424 227 HOH HOH A . C 3 HOH 113 425 228 HOH HOH A . C 3 HOH 114 426 230 HOH HOH A . C 3 HOH 115 427 231 HOH HOH A . C 3 HOH 116 428 232 HOH HOH A . C 3 HOH 117 429 233 HOH HOH A . C 3 HOH 118 430 234 HOH HOH A . C 3 HOH 119 431 235 HOH HOH A . C 3 HOH 120 432 236 HOH HOH A . C 3 HOH 121 433 237 HOH HOH A . C 3 HOH 122 434 238 HOH HOH A . C 3 HOH 123 435 239 HOH HOH A . C 3 HOH 124 436 240 HOH HOH A . C 3 HOH 125 437 241 HOH HOH A . C 3 HOH 126 438 242 HOH HOH A . C 3 HOH 127 439 243 HOH HOH A . C 3 HOH 128 440 244 HOH HOH A . C 3 HOH 129 441 245 HOH HOH A . C 3 HOH 130 442 247 HOH HOH A . C 3 HOH 131 443 248 HOH HOH A . C 3 HOH 132 444 250 HOH HOH A . C 3 HOH 133 445 251 HOH HOH A . C 3 HOH 134 446 253 HOH HOH A . C 3 HOH 135 447 254 HOH HOH A . C 3 HOH 136 448 259 HOH HOH A . C 3 HOH 137 449 266 HOH HOH A . C 3 HOH 138 450 267 HOH HOH A . C 3 HOH 139 451 268 HOH HOH A . C 3 HOH 140 452 269 HOH HOH A . C 3 HOH 141 453 270 HOH HOH A . C 3 HOH 142 454 271 HOH HOH A . C 3 HOH 143 455 272 HOH HOH A . C 3 HOH 144 456 273 HOH HOH A . C 3 HOH 145 457 274 HOH HOH A . C 3 HOH 146 458 275 HOH HOH A . C 3 HOH 147 459 278 HOH HOH A . C 3 HOH 148 460 281 HOH HOH A . C 3 HOH 149 461 282 HOH HOH A . C 3 HOH 150 462 283 HOH HOH A . C 3 HOH 151 463 284 HOH HOH A . C 3 HOH 152 464 285 HOH HOH A . C 3 HOH 153 465 286 HOH HOH A . C 3 HOH 154 466 287 HOH HOH A . C 3 HOH 155 467 288 HOH HOH A . C 3 HOH 156 468 289 HOH HOH A . D 3 HOH 1 77 1 HOH HOH B . D 3 HOH 2 78 2 HOH HOH B . D 3 HOH 3 79 3 HOH HOH B . D 3 HOH 4 80 4 HOH HOH B . D 3 HOH 5 81 5 HOH HOH B . D 3 HOH 6 82 7 HOH HOH B . D 3 HOH 7 83 8 HOH HOH B . D 3 HOH 8 84 9 HOH HOH B . D 3 HOH 9 85 13 HOH HOH B . D 3 HOH 10 86 14 HOH HOH B . D 3 HOH 11 87 16 HOH HOH B . D 3 HOH 12 88 17 HOH HOH B . D 3 HOH 13 89 18 HOH HOH B . D 3 HOH 14 90 19 HOH HOH B . D 3 HOH 15 91 20 HOH HOH B . D 3 HOH 16 92 21 HOH HOH B . D 3 HOH 17 93 22 HOH HOH B . D 3 HOH 18 94 23 HOH HOH B . D 3 HOH 19 95 24 HOH HOH B . D 3 HOH 20 96 25 HOH HOH B . D 3 HOH 21 97 26 HOH HOH B . D 3 HOH 22 98 27 HOH HOH B . D 3 HOH 23 99 28 HOH HOH B . D 3 HOH 24 100 29 HOH HOH B . D 3 HOH 25 101 30 HOH HOH B . D 3 HOH 26 102 31 HOH HOH B . D 3 HOH 27 103 32 HOH HOH B . D 3 HOH 28 104 33 HOH HOH B . D 3 HOH 29 105 34 HOH HOH B . D 3 HOH 30 106 36 HOH HOH B . D 3 HOH 31 107 37 HOH HOH B . D 3 HOH 32 108 38 HOH HOH B . D 3 HOH 33 109 39 HOH HOH B . D 3 HOH 34 110 41 HOH HOH B . D 3 HOH 35 111 42 HOH HOH B . D 3 HOH 36 112 43 HOH HOH B . D 3 HOH 37 113 44 HOH HOH B . D 3 HOH 38 114 45 HOH HOH B . D 3 HOH 39 115 46 HOH HOH B . D 3 HOH 40 116 47 HOH HOH B . D 3 HOH 41 117 48 HOH HOH B . D 3 HOH 42 118 49 HOH HOH B . D 3 HOH 43 119 50 HOH HOH B . D 3 HOH 44 120 51 HOH HOH B . D 3 HOH 45 121 52 HOH HOH B . D 3 HOH 46 122 54 HOH HOH B . D 3 HOH 47 123 55 HOH HOH B . D 3 HOH 48 124 56 HOH HOH B . D 3 HOH 49 125 57 HOH HOH B . D 3 HOH 50 126 61 HOH HOH B . D 3 HOH 51 127 62 HOH HOH B . D 3 HOH 52 128 65 HOH HOH B . D 3 HOH 53 129 66 HOH HOH B . D 3 HOH 54 130 68 HOH HOH B . D 3 HOH 55 131 69 HOH HOH B . D 3 HOH 56 132 70 HOH HOH B . D 3 HOH 57 133 71 HOH HOH B . D 3 HOH 58 134 72 HOH HOH B . D 3 HOH 59 135 73 HOH HOH B . D 3 HOH 60 136 74 HOH HOH B . D 3 HOH 61 137 75 HOH HOH B . D 3 HOH 62 138 76 HOH HOH B . D 3 HOH 63 139 77 HOH HOH B . D 3 HOH 64 140 78 HOH HOH B . D 3 HOH 65 141 79 HOH HOH B . D 3 HOH 66 142 80 HOH HOH B . D 3 HOH 67 143 81 HOH HOH B . D 3 HOH 68 144 82 HOH HOH B . D 3 HOH 69 145 83 HOH HOH B . D 3 HOH 70 146 84 HOH HOH B . D 3 HOH 71 147 85 HOH HOH B . D 3 HOH 72 148 86 HOH HOH B . D 3 HOH 73 149 87 HOH HOH B . D 3 HOH 74 150 88 HOH HOH B . D 3 HOH 75 151 89 HOH HOH B . D 3 HOH 76 152 91 HOH HOH B . D 3 HOH 77 153 92 HOH HOH B . D 3 HOH 78 154 93 HOH HOH B . D 3 HOH 79 155 97 HOH HOH B . D 3 HOH 80 156 181 HOH HOH B . D 3 HOH 81 157 182 HOH HOH B . D 3 HOH 82 158 183 HOH HOH B . D 3 HOH 83 159 184 HOH HOH B . D 3 HOH 84 160 185 HOH HOH B . D 3 HOH 85 161 186 HOH HOH B . D 3 HOH 86 162 187 HOH HOH B . D 3 HOH 87 163 188 HOH HOH B . D 3 HOH 88 164 189 HOH HOH B . D 3 HOH 89 165 190 HOH HOH B . D 3 HOH 90 166 191 HOH HOH B . D 3 HOH 91 167 192 HOH HOH B . D 3 HOH 92 168 193 HOH HOH B . D 3 HOH 93 169 194 HOH HOH B . D 3 HOH 94 170 195 HOH HOH B . D 3 HOH 95 171 196 HOH HOH B . D 3 HOH 96 172 197 HOH HOH B . D 3 HOH 97 173 198 HOH HOH B . D 3 HOH 98 174 199 HOH HOH B . D 3 HOH 99 175 200 HOH HOH B . D 3 HOH 100 176 201 HOH HOH B . D 3 HOH 101 177 202 HOH HOH B . D 3 HOH 102 178 203 HOH HOH B . D 3 HOH 103 179 204 HOH HOH B . D 3 HOH 104 180 205 HOH HOH B . D 3 HOH 105 181 209 HOH HOH B . D 3 HOH 106 182 210 HOH HOH B . D 3 HOH 107 183 211 HOH HOH B . D 3 HOH 108 184 212 HOH HOH B . D 3 HOH 109 185 213 HOH HOH B . D 3 HOH 110 186 214 HOH HOH B . D 3 HOH 111 187 215 HOH HOH B . D 3 HOH 112 188 216 HOH HOH B . D 3 HOH 113 189 217 HOH HOH B . D 3 HOH 114 190 218 HOH HOH B . D 3 HOH 115 191 219 HOH HOH B . D 3 HOH 116 192 229 HOH HOH B . D 3 HOH 117 193 246 HOH HOH B . D 3 HOH 118 194 249 HOH HOH B . D 3 HOH 119 195 252 HOH HOH B . D 3 HOH 120 196 255 HOH HOH B . D 3 HOH 121 197 256 HOH HOH B . D 3 HOH 122 198 257 HOH HOH B . D 3 HOH 123 199 258 HOH HOH B . D 3 HOH 124 200 260 HOH HOH B . D 3 HOH 125 201 261 HOH HOH B . D 3 HOH 126 202 262 HOH HOH B . D 3 HOH 127 203 263 HOH HOH B . D 3 HOH 128 204 264 HOH HOH B . D 3 HOH 129 205 265 HOH HOH B . D 3 HOH 130 206 276 HOH HOH B . D 3 HOH 131 207 277 HOH HOH B . D 3 HOH 132 208 279 HOH HOH B . D 3 HOH 133 209 280 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 HKL-2000 'data reduction' . ? 2 SOLVE phasing . ? 3 CNS refinement 1.0 ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 1WRD _cell.length_a 168.317 _cell.length_b 168.317 _cell.length_c 168.317 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WRD _symmetry.space_group_name_H-M 'F 4 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 209 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1WRD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.44 _exptl_crystal.density_percent_sol 49.6 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details 'sodium citrate, cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 1,2 ? ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'ADSC QUANTUM 4' 2004-06-15 ? 2 CCD 'ADSC QUANTUM 210' 2004-06-02 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M 'Si(111)' 'SINGLE WAVELENGTH' x-ray 2 1 M 'Si(111)' MAD x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9780 1.0 2 0.9791 1.0 3 0.9794 1.0 4 0.985 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'PHOTON FACTORY BEAMLINE BL-6A' 'Photon Factory' BL-6A ? 0.9780 2 SYNCHROTRON 'PHOTON FACTORY BEAMLINE AR-NW12A' 'Photon Factory' AR-NW12A ? '0.9791, 0.9794, 0.985' # _reflns.entry_id 1WRD _reflns.observed_criterion_sigma_F 1 _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.75 _reflns.d_resolution_low 50 _reflns.number_all 21120 _reflns.number_obs 20997 _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.057 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 20.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 14.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # _reflns_shell.d_res_high 1.75 _reflns_shell.d_res_low 1.81 _reflns_shell.percent_possible_all 99.4 _reflns_shell.Rmerge_I_obs 0.421 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 8.2 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1,2 # _refine.entry_id 1WRD _refine.ls_d_res_high 1.75 _refine.ls_d_res_low 28.45 _refine.pdbx_ls_sigma_F 1 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 21120 _refine.ls_number_reflns_obs 20997 _refine.ls_number_reflns_R_free 1059 _refine.ls_percent_reflns_obs 99.5 _refine.ls_R_factor_all 0.214 _refine.ls_R_factor_obs 0.214 _refine.ls_R_factor_R_work 0.213 _refine.ls_R_factor_R_free 0.259 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1388 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 289 _refine_hist.number_atoms_total 1677 _refine_hist.d_res_high 1.75 _refine_hist.d_res_low 28.45 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.004 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.031 ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1WRD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1WRD _struct.title 'Crystal structure of Tom1 GAT domain in complex with ubiquitin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1WRD _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT/SIGNALING PROTEIN' _struct_keywords.text 'THREE-HELIX BUNDLE, UBIQUITIN-BINDING PROTEIN, PROTEIN TRANSPORT-SIGNALING PROTEIN COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP TOM1_HUMAN O60784 1 ;EQIGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQIANEQLTEELLIVNDNLNNV FLRHERFERFRTGQTTKA ; 215 ? 2 UNP UBIQ_BOVIN P62990 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1WRD A 6 ? 103 ? O60784 215 ? 312 ? 215 312 2 2 1WRD B 1 ? 76 ? P62990 1 ? 76 ? 1 76 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1WRD GLY A 1 ? UNP O60784 ? ? 'cloning artifact' 210 1 1 1WRD PRO A 2 ? UNP O60784 ? ? 'cloning artifact' 211 2 1 1WRD LEU A 3 ? UNP O60784 ? ? 'cloning artifact' 212 3 1 1WRD GLY A 4 ? UNP O60784 ? ? 'cloning artifact' 213 4 1 1WRD SER A 5 ? UNP O60784 ? ? 'cloning artifact' 214 5 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PQS dimeric 2 2 software_defined_assembly PISA 48-meric 48 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 96140 ? 2 MORE -362 ? 2 'SSA (A^2)' 167620 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D 2 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 168.3170000000 0.0000000000 -1.0000000000 0.0000000000 168.3170000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1.0000000000 0.0000000000 0.0000000000 168.3170000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_565 x,-y+1,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 168.3170000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 5 'crystal symmetry operation' 13_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 6 'crystal symmetry operation' 14_665 -y+1,-x+1,-z 0.0000000000 -1.0000000000 0.0000000000 168.3170000000 -1.0000000000 0.0000000000 0.0000000000 168.3170000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 7 'crystal symmetry operation' 15_565 y,-x+1,z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 168.3170000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 8 'crystal symmetry operation' 16_655 -y+1,x,z 0.0000000000 -1.0000000000 0.0000000000 168.3170000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 9 'crystal symmetry operation' 33_554 y,z+1/2,x-1/2 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 84.1585000000 1.0000000000 0.0000000000 0.0000000000 -84.1585000000 10 'crystal symmetry operation' 34_655 -y+1,z+1/2,-x+1/2 0.0000000000 -1.0000000000 0.0000000000 168.3170000000 0.0000000000 0.0000000000 1.0000000000 84.1585000000 -1.0000000000 0.0000000000 0.0000000000 84.1585000000 11 'crystal symmetry operation' 35_555 y,-z+1/2,-x+1/2 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 84.1585000000 -1.0000000000 0.0000000000 0.0000000000 84.1585000000 12 'crystal symmetry operation' 36_654 -y+1,-z+1/2,x-1/2 0.0000000000 -1.0000000000 0.0000000000 168.3170000000 0.0000000000 0.0000000000 -1.0000000000 84.1585000000 1.0000000000 0.0000000000 0.0000000000 -84.1585000000 13 'crystal symmetry operation' 41_555 x,z+1/2,-y+1/2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 84.1585000000 0.0000000000 -1.0000000000 0.0000000000 84.1585000000 14 'crystal symmetry operation' 42_654 -x+1,z+1/2,y-1/2 -1.0000000000 0.0000000000 0.0000000000 168.3170000000 0.0000000000 0.0000000000 1.0000000000 84.1585000000 0.0000000000 1.0000000000 0.0000000000 -84.1585000000 15 'crystal symmetry operation' 43_655 -x+1,-z+1/2,-y+1/2 -1.0000000000 0.0000000000 0.0000000000 168.3170000000 0.0000000000 0.0000000000 -1.0000000000 84.1585000000 0.0000000000 -1.0000000000 0.0000000000 84.1585000000 16 'crystal symmetry operation' 44_554 x,-z+1/2,y-1/2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 84.1585000000 0.0000000000 1.0000000000 0.0000000000 -84.1585000000 17 'crystal symmetry operation' 53_554 z+1/2,x,y-1/2 0.0000000000 0.0000000000 1.0000000000 84.1585000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -84.1585000000 18 'crystal symmetry operation' 54_565 z+1/2,-x+1,-y+1/2 0.0000000000 0.0000000000 1.0000000000 84.1585000000 -1.0000000000 0.0000000000 0.0000000000 168.3170000000 0.0000000000 -1.0000000000 0.0000000000 84.1585000000 19 'crystal symmetry operation' 55_564 -z+1/2,-x+1,y-1/2 0.0000000000 0.0000000000 -1.0000000000 84.1585000000 -1.0000000000 0.0000000000 0.0000000000 168.3170000000 0.0000000000 1.0000000000 0.0000000000 -84.1585000000 20 'crystal symmetry operation' 56_555 -z+1/2,x,-y+1/2 0.0000000000 0.0000000000 -1.0000000000 84.1585000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 84.1585000000 21 'crystal symmetry operation' 69_555 z+1/2,y,-x+1/2 0.0000000000 0.0000000000 1.0000000000 84.1585000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 84.1585000000 22 'crystal symmetry operation' 70_564 z+1/2,-y+1,x-1/2 0.0000000000 0.0000000000 1.0000000000 84.1585000000 0.0000000000 -1.0000000000 0.0000000000 168.3170000000 1.0000000000 0.0000000000 0.0000000000 -84.1585000000 23 'crystal symmetry operation' 71_554 -z+1/2,y,x-1/2 0.0000000000 0.0000000000 -1.0000000000 84.1585000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -84.1585000000 24 'crystal symmetry operation' 72_565 -z+1/2,-y+1,-x+1/2 0.0000000000 0.0000000000 -1.0000000000 84.1585000000 0.0000000000 -1.0000000000 0.0000000000 168.3170000000 -1.0000000000 0.0000000000 0.0000000000 84.1585000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 7 ? LEU A 32 ? GLN A 216 LEU A 241 1 ? 26 HELX_P HELX_P2 2 GLU A 38 ? ILE A 66 ? GLU A 247 ILE A 275 1 ? 29 HELX_P HELX_P3 3 ASN A 68 ? THR A 97 ? ASN A 277 THR A 306 1 ? 30 HELX_P HELX_P4 4 THR B 22 ? GLY B 35 ? THR B 22 GLY B 35 1 ? 14 HELX_P HELX_P5 5 PRO B 37 ? ASP B 39 ? PRO B 37 ASP B 39 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR B 12 ? GLU B 16 ? THR B 12 GLU B 16 A 2 GLN B 2 ? THR B 7 ? GLN B 2 THR B 7 A 3 THR B 66 ? LEU B 71 ? THR B 66 LEU B 71 A 4 GLN B 41 ? PHE B 45 ? GLN B 41 PHE B 45 A 5 LYS B 48 ? GLN B 49 ? LYS B 48 GLN B 49 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE B 13 ? O ILE B 13 N VAL B 5 ? N VAL B 5 A 2 3 N PHE B 4 ? N PHE B 4 O LEU B 67 ? O LEU B 67 A 3 4 O VAL B 70 ? O VAL B 70 N ARG B 42 ? N ARG B 42 A 4 5 N PHE B 45 ? N PHE B 45 O LYS B 48 ? O LYS B 48 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id GLN _pdbx_validate_torsion.auth_asym_id B _pdbx_validate_torsion.auth_seq_id 62 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -111.09 _pdbx_validate_torsion.psi -165.10 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 408 ? C HOH . 2 1 A HOH 409 ? C HOH . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLN 308 ? A GLN 99 2 1 Y 1 A THR 309 ? A THR 100 3 1 Y 1 A THR 310 ? A THR 101 4 1 Y 1 A LYS 311 ? A LYS 102 5 1 Y 1 A ALA 312 ? A ALA 103 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TYR N N N N 321 TYR CA C N S 322 TYR C C N N 323 TYR O O N N 324 TYR CB C N N 325 TYR CG C Y N 326 TYR CD1 C Y N 327 TYR CD2 C Y N 328 TYR CE1 C Y N 329 TYR CE2 C Y N 330 TYR CZ C Y N 331 TYR OH O N N 332 TYR OXT O N N 333 TYR H H N N 334 TYR H2 H N N 335 TYR HA H N N 336 TYR HB2 H N N 337 TYR HB3 H N N 338 TYR HD1 H N N 339 TYR HD2 H N N 340 TYR HE1 H N N 341 TYR HE2 H N N 342 TYR HH H N N 343 TYR HXT H N N 344 VAL N N N N 345 VAL CA C N S 346 VAL C C N N 347 VAL O O N N 348 VAL CB C N N 349 VAL CG1 C N N 350 VAL CG2 C N N 351 VAL OXT O N N 352 VAL H H N N 353 VAL H2 H N N 354 VAL HA H N N 355 VAL HB H N N 356 VAL HG11 H N N 357 VAL HG12 H N N 358 VAL HG13 H N N 359 VAL HG21 H N N 360 VAL HG22 H N N 361 VAL HG23 H N N 362 VAL HXT H N N 363 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TYR N CA sing N N 306 TYR N H sing N N 307 TYR N H2 sing N N 308 TYR CA C sing N N 309 TYR CA CB sing N N 310 TYR CA HA sing N N 311 TYR C O doub N N 312 TYR C OXT sing N N 313 TYR CB CG sing N N 314 TYR CB HB2 sing N N 315 TYR CB HB3 sing N N 316 TYR CG CD1 doub Y N 317 TYR CG CD2 sing Y N 318 TYR CD1 CE1 sing Y N 319 TYR CD1 HD1 sing N N 320 TYR CD2 CE2 doub Y N 321 TYR CD2 HD2 sing N N 322 TYR CE1 CZ doub Y N 323 TYR CE1 HE1 sing N N 324 TYR CE2 CZ sing Y N 325 TYR CE2 HE2 sing N N 326 TYR CZ OH sing N N 327 TYR OH HH sing N N 328 TYR OXT HXT sing N N 329 VAL N CA sing N N 330 VAL N H sing N N 331 VAL N H2 sing N N 332 VAL CA C sing N N 333 VAL CA CB sing N N 334 VAL CA HA sing N N 335 VAL C O doub N N 336 VAL C OXT sing N N 337 VAL CB CG1 sing N N 338 VAL CB CG2 sing N N 339 VAL CB HB sing N N 340 VAL CG1 HG11 sing N N 341 VAL CG1 HG12 sing N N 342 VAL CG1 HG13 sing N N 343 VAL CG2 HG21 sing N N 344 VAL CG2 HG22 sing N N 345 VAL CG2 HG23 sing N N 346 VAL OXT HXT sing N N 347 # _atom_sites.entry_id 1WRD _atom_sites.fract_transf_matrix[1][1] 0.005941 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.005941 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005941 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_