HEADER RNA BINDING PROTEIN 25-OCT-04 1WRO TITLE METAL ION DEPENDENCY OF THE ANTITERMINATOR PROTEIN, HUTP, FOR BINDING TITLE 2 TO THE TERMINATOR REGION OF HUT MRNA- A STRUCTURAL BASIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUT OPERON POSITIVE REGULATORY PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: HUTP; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: PETHP4; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET5A KEYWDS HUTP, RNA BINDING PROTEIN, ANTITERMINATION, L-HISTIDINE, METAL IONS, KEYWDS 2 CONFORMATIONAL CHANGE EXPDTA X-RAY DIFFRACTION AUTHOR T.KUMAREVEL,H.MIZUNO,P.K.R.KUMAR REVDAT 6 25-OCT-23 1WRO 1 REMARK REVDAT 5 10-NOV-21 1WRO 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 1WRO 1 VERSN REVDAT 3 24-FEB-09 1WRO 1 VERSN REVDAT 2 11-OCT-05 1WRO 1 AUTHOR JRNL REMARK REVDAT 1 30-AUG-05 1WRO 0 JRNL AUTH T.KUMAREVEL,H.MIZUNO,P.K.R.KUMAR JRNL TITL CHARACTERIZATION OF THE METAL ION BINDING SITE IN THE JRNL TITL 2 ANTI-TERMINATOR PROTEIN, HUTP, OF BACILLUS SUBTILIS JRNL REF NUCLEIC ACIDS RES. V. 33 5494 2005 JRNL REFN ISSN 0305-1048 JRNL PMID 16192572 JRNL DOI 10.1093/NAR/GKI868 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.KUMAREVEL,H.MIZUNO,P.K.R.KUMAR REMARK 1 TITL STRUCTURAL BASIS OF HUTP-MEDIATED ANTI-TERMINATION AND ROLES REMARK 1 TITL 2 OF THE MG2+ ION AND L-HISTIDINE LIGAND REMARK 1 REF NATURE V. 434 183 2005 REMARK 1 REFN ISSN 0028-0836 REMARK 1 PMID 15758992 REMARK 1 DOI 10.1038/NATURE03355 REMARK 1 REFERENCE 2 REMARK 1 AUTH T.KUMAREVEL,Z.FUJIMOTO,P.KARTHE,M.ODA,H.MIZUNO,P.K.R.KUMAR REMARK 1 TITL CRYSTAL STRUCTURE OF ACTIVATED HUTP; AN RNA BINDING PROTEIN REMARK 1 TITL 2 THAT REGULATES TRANSCRIPTION OF THE HUT OPERON IN BACILLUS REMARK 1 TITL 3 SUBTILIS REMARK 1 REF STRUCTURE V. 12 1269 2004 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 15242603 REMARK 1 DOI 10.1016/J.STR.2004.05.005 REMARK 1 REFERENCE 3 REMARK 1 AUTH T.KUMAREVEL,S.C.B.GOPINATH,S.NISHIKAWA,H.MIZUNO,P.K.R.KUMAR REMARK 1 TITL IDENTIFICATION OF IMPORTANT CHEMICAL GROUPS OF THE HUT MRNA REMARK 1 TITL 2 FOR HUTP INTERACTIONS THAT REGULATE THE HUT OPERON IN REMARK 1 TITL 3 BACILLUS SUBTILIS REMARK 1 REF NUCLEIC ACIDS RES. V. 32 3904 2004 REMARK 1 REFN ISSN 0305-1048 REMARK 1 PMID 15273277 REMARK 1 DOI 10.1093/NAR/GKH725 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1433303.800 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 20669 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.300 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1048 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.50 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3207 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE : 0.3960 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 156 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.032 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3330 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.95000 REMARK 3 B22 (A**2) : 1.81000 REMARK 3 B33 (A**2) : -4.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM SIGMAA (A) : 0.32 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.43 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.870 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.260 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.080 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.930 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.690 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.29 REMARK 3 BSOL : 51.73 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : DNA-RNA_REP.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WRO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-OCT-04. REMARK 100 THE DEPOSITION ID IS D_1000023921. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-04 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20744 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.38400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ID 1VEA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BACL2, MPD, HEPES , PH 7.4, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 39.11000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.57000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.11000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.57000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HEXAMER GENERATED FROM THR REMARK 300 TRIMER IN THE ASYMMETRIC UNIT BY THE OPERATION 1-X, -Y, Z (2_655) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 22040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -226.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 78.22000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 5 CG CD CE NZ REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 GLU A 23 CG CD OE1 OE2 REMARK 470 SER A 24 OG REMARK 470 LYS A 60 CG CD CE NZ REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 LYS B 5 CG CD CE NZ REMARK 470 GLU B 22 CG CD OE1 OE2 REMARK 470 GLU B 23 CG CD OE1 OE2 REMARK 470 SER B 24 OG REMARK 470 LYS B 60 CG CD CE NZ REMARK 470 LYS B 134 CG CD CE NZ REMARK 470 LYS C 5 CG CD CE NZ REMARK 470 GLU C 22 CG CD OE1 OE2 REMARK 470 GLU C 23 CG CD OE1 OE2 REMARK 470 SER C 24 OG REMARK 470 LYS C 60 CG CD CE NZ REMARK 470 LYS C 134 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 5 CB REMARK 480 LEU A 15 CD1 REMARK 480 LEU A 17 CD2 REMARK 480 ASN A 19 CG ND2 REMARK 480 THR A 25 CB OG1 CG2 REMARK 480 GLN A 26 CG NE2 REMARK 480 GLU A 28 CB REMARK 480 GLU A 29 CG CD OE1 OE2 REMARK 480 LYS A 36 CD CE NZ REMARK 480 SER A 66 OG REMARK 480 GLU A 67 CG CD OE1 OE2 REMARK 480 ARG A 70 CG NH2 REMARK 480 GLU A 81 OE2 REMARK 480 GLU A 113 CG REMARK 480 GLU A 115 CB CG OE2 REMARK 480 LYS B 5 CB REMARK 480 LEU B 15 CD1 REMARK 480 LEU B 17 CD2 REMARK 480 ASN B 19 CG ND2 REMARK 480 THR B 25 CB OG1 CG2 REMARK 480 GLN B 26 CG NE2 REMARK 480 GLU B 28 CB REMARK 480 GLU B 29 CG CD OE1 OE2 REMARK 480 LYS B 36 CD CE NZ REMARK 480 SER B 66 OG REMARK 480 GLU B 67 CG CD OE1 OE2 REMARK 480 ARG B 70 CG NH2 REMARK 480 GLU B 81 OE2 REMARK 480 GLU B 113 CG REMARK 480 GLU B 115 CB CG OE2 REMARK 480 LYS C 5 CB REMARK 480 LEU C 15 CD1 REMARK 480 LEU C 17 CD2 REMARK 480 ASN C 19 CG ND2 REMARK 480 THR C 25 CB OG1 CG2 REMARK 480 GLN C 26 CG NE2 REMARK 480 GLU C 28 CB REMARK 480 GLU C 29 CG CD OE1 OE2 REMARK 480 LYS C 36 CD CE NZ REMARK 480 SER C 66 OG REMARK 480 GLU C 67 CG CD OE1 OE2 REMARK 480 ARG C 70 CG NH2 REMARK 480 GLU C 81 OE2 REMARK 480 GLU C 113 CG REMARK 480 GLU C 115 CB CG OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 70 O ILE B 148 2655 2.15 REMARK 500 O ILE A 148 NH2 ARG B 70 2655 2.16 REMARK 500 O HOH C 4033 O HOH C 4033 2655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 5 -37.44 -34.37 REMARK 500 GLU A 23 -52.10 -126.67 REMARK 500 LEU A 93 -92.14 -123.28 REMARK 500 PRO A 132 32.74 -69.27 REMARK 500 GLU A 137 -170.08 -172.93 REMARK 500 ALA B 21 -72.20 -54.32 REMARK 500 GLU B 23 -55.51 -147.96 REMARK 500 ARG B 70 -60.91 -26.10 REMARK 500 MET B 91 56.38 -69.02 REMARK 500 LEU B 93 -96.58 -116.27 REMARK 500 PRO B 132 7.89 -54.44 REMARK 500 ARG C 7 38.24 -140.98 REMARK 500 SER C 24 98.47 -69.32 REMARK 500 LEU C 93 -92.56 -116.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HIS A 1001 REMARK 615 HIS B 2001 REMARK 615 HIS C 3001 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A4002 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 73 NE2 REMARK 620 2 HIS A 77 NE2 87.3 REMARK 620 3 HOH A4007 O 86.5 80.4 REMARK 620 4 HIS B 138 NE2 101.4 170.1 95.1 REMARK 620 5 HIS B2001 N 105.2 96.9 167.9 85.7 REMARK 620 6 HIS B2001 O 170.2 85.1 98.3 86.8 69.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A4006 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 89 O REMARK 620 2 GLU B 90 OE2 95.8 REMARK 620 3 BA B4005 BA 134.8 72.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A4004 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 90 OE2 REMARK 620 2 BA A4006 BA 88.8 REMARK 620 3 BA A4006 BA 171.6 94.7 REMARK 620 4 BA B4005 BA 105.5 57.4 82.8 REMARK 620 5 GLY C 89 O 82.0 127.2 101.7 75.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA C4001 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 138 NE2 REMARK 620 2 HIS A1001 O 94.7 REMARK 620 3 HIS A1001 N 73.3 70.6 REMARK 620 4 HIS C 73 NE2 102.1 163.0 111.5 REMARK 620 5 HIS C 77 NE2 172.3 90.1 114.1 73.6 REMARK 620 6 HOH C4002 O 94.3 103.5 165.3 78.3 78.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA B4003 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 73 NE2 REMARK 620 2 HIS B 77 NE2 91.5 REMARK 620 3 HOH B4006 O 92.1 82.8 REMARK 620 4 HIS C 138 NE2 94.3 169.2 87.9 REMARK 620 5 HIS C3001 O 169.2 88.5 98.5 87.5 REMARK 620 6 HIS C3001 N 103.8 101.8 163.2 85.7 65.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA B4005 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 89 O REMARK 620 2 GLU B 90 OE2 51.6 REMARK 620 3 GLU C 90 OE2 96.3 88.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA C 4001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 4002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA B 4003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 4004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA B 4005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA A 4006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HIS A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HIS B 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HIS C 3001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1VEA RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH L-HISTIDINE ANALOG REMARK 900 RELATED ID: 1WMQ RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH METAL IONS,L-HISTIDINE AND 21-MER REMARK 900 RNA CONTAINING UAG REPEATING MOTIFS REMARK 900 RELATED ID: 1WPS RELATED DB: PDB REMARK 900 THE SAME PROTEIN CRYSTALLIZED IN THE PRESENCE OF CHELATING AGENT, REMARK 900 EDTA REMARK 900 RELATED ID: 1WPT RELATED DB: PDB REMARK 900 THE SAME PROTEIN CRYSTALLIZED IN THE PRESENCE OF MGCL2 REMARK 900 RELATED ID: 1WPU RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH L-HISTIDINE, MGCL2 AND 21-MER RNA REMARK 900 CONTAINING GAG REPEATING MOTIFS REMARK 900 RELATED ID: 1WPV RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH L-HISTIDINE AND MGCL2 REMARK 900 RELATED ID: 1WRN RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH L-HISTIDINE AND MANGANESE ION REMARK 900 RELATED ID: 1WRQ RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH L-HISTIDINE AND MAGNESIUM ION DBREF 1WRO A 2 148 UNP P10943 HUTP_BACSU 1 147 DBREF 1WRO B 2 148 UNP P10943 HUTP_BACSU 1 147 DBREF 1WRO C 2 148 UNP P10943 HUTP_BACSU 1 147 SEQADV 1WRO ILE A 51 UNP P10943 VAL 50 ENGINEERED MUTATION SEQADV 1WRO ILE B 51 UNP P10943 VAL 50 ENGINEERED MUTATION SEQADV 1WRO ILE C 51 UNP P10943 VAL 50 ENGINEERED MUTATION SEQRES 1 A 147 THR LEU HIS LYS GLU ARG ARG ILE GLY ARG LEU SER VAL SEQRES 2 A 147 LEU LEU LEU LEU ASN GLU ALA GLU GLU SER THR GLN VAL SEQRES 3 A 147 GLU GLU LEU GLU ARG ASP GLY TRP LYS VAL CYS LEU GLY SEQRES 4 A 147 LYS VAL GLY SER MET ASP ALA HIS LYS VAL ILE ALA ALA SEQRES 5 A 147 ILE GLU THR ALA SER LYS LYS SER GLY VAL ILE GLN SER SEQRES 6 A 147 GLU GLY TYR ARG GLU SER HIS ALA LEU TYR HIS ALA THR SEQRES 7 A 147 MET GLU ALA LEU HIS GLY VAL THR ARG GLY GLU MET LEU SEQRES 8 A 147 LEU GLY SER LEU LEU ARG THR VAL GLY LEU ARG PHE ALA SEQRES 9 A 147 VAL LEU ARG GLY ASN PRO TYR GLU SER GLU ALA GLU GLY SEQRES 10 A 147 ASP TRP ILE ALA VAL SER LEU TYR GLY THR ILE GLY ALA SEQRES 11 A 147 PRO ILE LYS GLY LEU GLU HIS GLU THR PHE GLY VAL GLY SEQRES 12 A 147 ILE ASN HIS ILE SEQRES 1 B 147 THR LEU HIS LYS GLU ARG ARG ILE GLY ARG LEU SER VAL SEQRES 2 B 147 LEU LEU LEU LEU ASN GLU ALA GLU GLU SER THR GLN VAL SEQRES 3 B 147 GLU GLU LEU GLU ARG ASP GLY TRP LYS VAL CYS LEU GLY SEQRES 4 B 147 LYS VAL GLY SER MET ASP ALA HIS LYS VAL ILE ALA ALA SEQRES 5 B 147 ILE GLU THR ALA SER LYS LYS SER GLY VAL ILE GLN SER SEQRES 6 B 147 GLU GLY TYR ARG GLU SER HIS ALA LEU TYR HIS ALA THR SEQRES 7 B 147 MET GLU ALA LEU HIS GLY VAL THR ARG GLY GLU MET LEU SEQRES 8 B 147 LEU GLY SER LEU LEU ARG THR VAL GLY LEU ARG PHE ALA SEQRES 9 B 147 VAL LEU ARG GLY ASN PRO TYR GLU SER GLU ALA GLU GLY SEQRES 10 B 147 ASP TRP ILE ALA VAL SER LEU TYR GLY THR ILE GLY ALA SEQRES 11 B 147 PRO ILE LYS GLY LEU GLU HIS GLU THR PHE GLY VAL GLY SEQRES 12 B 147 ILE ASN HIS ILE SEQRES 1 C 147 THR LEU HIS LYS GLU ARG ARG ILE GLY ARG LEU SER VAL SEQRES 2 C 147 LEU LEU LEU LEU ASN GLU ALA GLU GLU SER THR GLN VAL SEQRES 3 C 147 GLU GLU LEU GLU ARG ASP GLY TRP LYS VAL CYS LEU GLY SEQRES 4 C 147 LYS VAL GLY SER MET ASP ALA HIS LYS VAL ILE ALA ALA SEQRES 5 C 147 ILE GLU THR ALA SER LYS LYS SER GLY VAL ILE GLN SER SEQRES 6 C 147 GLU GLY TYR ARG GLU SER HIS ALA LEU TYR HIS ALA THR SEQRES 7 C 147 MET GLU ALA LEU HIS GLY VAL THR ARG GLY GLU MET LEU SEQRES 8 C 147 LEU GLY SER LEU LEU ARG THR VAL GLY LEU ARG PHE ALA SEQRES 9 C 147 VAL LEU ARG GLY ASN PRO TYR GLU SER GLU ALA GLU GLY SEQRES 10 C 147 ASP TRP ILE ALA VAL SER LEU TYR GLY THR ILE GLY ALA SEQRES 11 C 147 PRO ILE LYS GLY LEU GLU HIS GLU THR PHE GLY VAL GLY SEQRES 12 C 147 ILE ASN HIS ILE HET BA A4002 1 HET BA A4004 1 HET BA A4006 1 HET HIS A1001 11 HET BA B4003 1 HET BA B4005 1 HET HIS B2001 11 HET BA C4001 1 HET HIS C3001 11 HETNAM BA BARIUM ION HETNAM HIS HISTIDINE FORMUL 4 BA 6(BA 2+) FORMUL 7 HIS 3(C6 H10 N3 O2 1+) FORMUL 13 HOH *240(H2 O) HELIX 1 1 ARG A 8 ASN A 19 1 12 HELIX 2 2 GLU A 23 ASP A 33 1 11 HELIX 3 3 ASP A 46 SER A 61 1 16 HELIX 4 4 TYR A 69 ARG A 88 1 20 HELIX 5 5 LEU A 93 LEU A 97 5 5 HELIX 6 6 SER A 114 GLY A 118 5 5 HELIX 7 7 ARG B 8 ASN B 19 1 12 HELIX 8 8 GLU B 23 ASP B 33 1 11 HELIX 9 9 ASP B 46 SER B 61 1 16 HELIX 10 10 TYR B 69 ARG B 88 1 20 HELIX 11 11 LEU B 93 LEU B 97 5 5 HELIX 12 12 SER B 114 GLY B 118 5 5 HELIX 13 13 ARG C 8 ASN C 19 1 12 HELIX 14 14 THR C 25 ASP C 33 1 9 HELIX 15 15 ASP C 46 SER C 61 1 16 HELIX 16 16 TYR C 69 ARG C 88 1 20 HELIX 17 17 LEU C 93 LEU C 97 5 5 HELIX 18 18 SER C 114 GLY C 118 5 5 SHEET 1 A 4 LYS A 36 SER A 44 0 SHEET 2 A 4 THR A 99 GLY A 109 -1 O LEU A 102 N VAL A 42 SHEET 3 A 4 TRP A 120 GLY A 130 -1 O TYR A 126 N ARG A 103 SHEET 4 A 4 GLU A 137 HIS A 147 -1 O GLY A 144 N VAL A 123 SHEET 1 B 4 LYS B 36 SER B 44 0 SHEET 2 B 4 THR B 99 GLY B 109 -1 O PHE B 104 N GLY B 40 SHEET 3 B 4 TRP B 120 GLY B 130 -1 O GLY B 130 N THR B 99 SHEET 4 B 4 GLU B 137 HIS B 147 -1 O ASN B 146 N ILE B 121 SHEET 1 C 4 LYS C 36 SER C 44 0 SHEET 2 C 4 THR C 99 GLY C 109 -1 O PHE C 104 N GLY C 40 SHEET 3 C 4 TRP C 120 GLY C 130 -1 O ALA C 122 N LEU C 107 SHEET 4 C 4 GLU C 137 HIS C 147 -1 O GLY C 144 N VAL C 123 LINK NE2 HIS A 73 BA BA A4002 1555 1555 2.66 LINK NE2 HIS A 77 BA BA A4002 1555 1555 2.47 LINK O GLY A 89 BA BA A4006 1555 1555 2.85 LINK OE2 GLU A 90 BA BA A4004 1555 1555 2.71 LINK NE2 HIS A 138 BA BA C4001 1555 1555 2.60 LINK O HIS A1001 BA BA C4001 1555 1555 2.60 LINK N HIS A1001 BA BA C4001 1555 1555 2.62 LINK BA BA A4002 O HOH A4007 1555 1555 2.62 LINK BA BA A4002 NE2 HIS B 138 1555 1555 2.56 LINK BA BA A4002 N HIS B2001 1555 1555 2.45 LINK BA BA A4002 O HIS B2001 1555 1555 2.64 LINK BA BA A4004 BA BA A4006 1555 1555 3.38 LINK BA BA A4004 BA BA A4006 1555 2655 3.30 LINK BA BA A4004 BA BA B4005 1555 1555 3.66 LINK BA BA A4004 O GLY C 89 1555 1555 3.00 LINK BA BA A4006 OE2 GLU B 90 1555 1555 2.77 LINK BA BA A4006 BA BA B4005 1555 1555 3.39 LINK NE2 HIS B 73 BA BA B4003 1555 1555 2.60 LINK NE2 HIS B 77 BA BA B4003 1555 1555 2.51 LINK O GLY B 89 BA BA B4005 1555 1555 2.80 LINK OE2 GLU B 90 BA BA B4005 1555 1555 3.67 LINK BA BA B4003 O HOH B4006 1555 1555 2.55 LINK BA BA B4003 NE2 HIS C 138 1555 1555 2.60 LINK BA BA B4003 O HIS C3001 1555 1555 2.71 LINK BA BA B4003 N HIS C3001 1555 1555 2.54 LINK BA BA B4005 OE2 GLU C 90 1555 1555 2.74 LINK NE2 HIS C 73 BA BA C4001 1555 1555 2.93 LINK NE2 HIS C 77 BA BA C4001 1555 1555 2.64 LINK BA BA C4001 O HOH C4002 1555 1555 2.63 SITE 1 AC1 5 HIS A 138 HIS A1001 HIS C 73 HIS C 77 SITE 2 AC1 5 HOH C4002 SITE 1 AC2 5 HIS A 73 HIS A 77 HOH A4007 HIS B 138 SITE 2 AC2 5 HIS B2001 SITE 1 AC3 5 HIS B 73 HIS B 77 HOH B4006 HIS C 138 SITE 2 AC3 5 HIS C3001 SITE 1 AC4 4 GLU A 90 BA A4006 BA B4005 GLY C 89 SITE 1 AC5 5 BA A4004 BA A4006 GLY B 89 GLU B 90 SITE 2 AC5 5 GLU C 90 SITE 1 AC6 4 GLY A 89 BA A4004 GLU B 90 BA B4005 SITE 1 AC7 10 ARG A 88 LEU A 97 ARG A 98 ILE A 129 SITE 2 AC7 10 GLY A 130 ALA A 131 TYR C 69 TYR C 76 SITE 3 AC7 10 HIS C 77 BA C4001 SITE 1 AC8 10 TYR A 69 TYR A 76 HIS A 77 BA A4002 SITE 2 AC8 10 ARG B 88 ARG B 98 ILE B 129 GLY B 130 SITE 3 AC8 10 ALA B 131 HIS B 138 SITE 1 AC9 11 TYR B 69 TYR B 76 HIS B 77 BA B4003 SITE 2 AC9 11 ARG C 88 ARG C 98 ILE C 129 GLY C 130 SITE 3 AC9 11 ALA C 131 HIS C 138 HOH C4049 CRYST1 78.220 81.140 75.970 90.00 90.00 90.00 P 21 21 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012784 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012324 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013163 0.00000