HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-OCT-04 1WRY TITLE SOLUTION STRUCTURE OF THE SH3 DOMAIN-BINDING GLUTAMIC ACID-RICH-LIKE TITLE 2 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SH3 DOMAIN-BINDING GLUTAMIC ACID-RICH-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3BGR DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IMS CDNA STM03594; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040517-09; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS SH3BGR LIKE PROTEIN, STRUCTURAL GENOMICS, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.INOUE,K.MIYAMOTO,T.NAGASHIMA,F.HAYASHI,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1WRY 1 REMARK SEQADV REVDAT 2 24-FEB-09 1WRY 1 VERSN REVDAT 1 29-APR-05 1WRY 0 JRNL AUTH K.INOUE,K.MIYAMOTO,T.NAGASHIMA,F.HAYASHI,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SH3 DOMAIN-BINDING GLUTAMIC JRNL TITL 2 ACID-RICH-LIKE PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 1.0.7 REMARK 3 AUTHORS : VARIAN (VNMR), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WRY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-NOV-04. REMARK 100 THE DEPOSITION ID IS D_1000023928. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.10MM SH3BGR U-15N,13C; 20MM D REMARK 210 -TRIS-HCL; 100MM NACL; 1MM D-DTT; REMARK 210 0.02% NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.8992, CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH REMARK 210 THE LOWEST ENERGY,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 33 HD21 ASN A 37 1.50 REMARK 500 O ASN A 78 H SER A 80 1.53 REMARK 500 O LEU A 34 H ILE A 39 1.54 REMARK 500 O ALA A 92 H ALA A 97 1.56 REMARK 500 O ARG A 93 H ASN A 96 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 140.77 -172.93 REMARK 500 1 MET A 8 85.92 38.86 REMARK 500 1 SER A 20 109.52 -54.99 REMARK 500 1 ALA A 48 -74.11 -74.21 REMARK 500 1 PRO A 66 -166.79 -75.04 REMARK 500 1 THR A 68 135.47 -177.84 REMARK 500 1 TYR A 70 162.14 56.30 REMARK 500 1 GLU A 79 -59.82 65.73 REMARK 500 1 SER A 80 -39.81 -145.81 REMARK 500 1 TYR A 86 -36.08 -37.88 REMARK 500 1 VAL A 115 89.28 41.28 REMARK 500 1 SER A 119 100.42 53.32 REMARK 500 2 SER A 2 -58.14 -167.53 REMARK 500 2 SER A 6 104.59 176.73 REMARK 500 2 SER A 16 125.63 -38.53 REMARK 500 2 SER A 17 54.06 85.07 REMARK 500 2 ALA A 48 57.05 -98.15 REMARK 500 2 ASN A 49 93.40 169.43 REMARK 500 2 GLU A 79 -62.02 65.92 REMARK 500 2 SER A 80 -38.30 -143.51 REMARK 500 2 TYR A 86 -37.79 -39.90 REMARK 500 2 ALA A 97 25.46 -153.70 REMARK 500 2 SER A 116 101.88 53.36 REMARK 500 3 SER A 3 99.06 -58.25 REMARK 500 3 SER A 5 105.90 -175.08 REMARK 500 3 ALA A 15 65.54 -113.88 REMARK 500 3 SER A 16 138.43 -37.65 REMARK 500 3 SER A 20 100.03 -173.05 REMARK 500 3 ALA A 47 50.32 -91.09 REMARK 500 3 ALA A 48 -67.49 -175.12 REMARK 500 3 THR A 68 144.23 -170.28 REMARK 500 3 GLU A 79 -76.38 62.82 REMARK 500 3 SER A 80 12.95 -141.40 REMARK 500 3 ALA A 97 37.78 -147.84 REMARK 500 3 VAL A 115 102.39 -40.74 REMARK 500 3 SER A 119 78.18 60.63 REMARK 500 4 SER A 2 107.43 -165.86 REMARK 500 4 MET A 8 85.34 -162.78 REMARK 500 4 ALA A 15 63.65 -115.60 REMARK 500 4 SER A 16 128.28 -37.74 REMARK 500 4 SER A 17 39.48 83.33 REMARK 500 4 ALA A 48 -86.12 -81.73 REMARK 500 4 GLU A 79 -59.79 66.50 REMARK 500 4 SER A 80 -37.99 -145.78 REMARK 500 4 SER A 116 143.05 61.10 REMARK 500 4 SER A 119 -59.67 72.71 REMARK 500 5 SER A 3 128.39 -178.82 REMARK 500 5 MET A 8 85.61 61.21 REMARK 500 5 ALA A 15 64.69 -119.53 REMARK 500 5 SER A 16 122.32 -38.38 REMARK 500 REMARK 500 THIS ENTRY HAS 253 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001003589 RELATED DB: TARGETDB DBREF 1WRY A 8 115 UNP O75368 SH3L1_HUMAN 1 108 SEQADV 1WRY GLY A 1 UNP O75368 CLONING ARTIFACT SEQADV 1WRY SER A 2 UNP O75368 CLONING ARTIFACT SEQADV 1WRY SER A 3 UNP O75368 CLONING ARTIFACT SEQADV 1WRY GLY A 4 UNP O75368 CLONING ARTIFACT SEQADV 1WRY SER A 5 UNP O75368 CLONING ARTIFACT SEQADV 1WRY SER A 6 UNP O75368 CLONING ARTIFACT SEQADV 1WRY GLY A 7 UNP O75368 CLONING ARTIFACT SEQADV 1WRY SER A 116 UNP O75368 CLONING ARTIFACT SEQADV 1WRY GLY A 117 UNP O75368 CLONING ARTIFACT SEQADV 1WRY PRO A 118 UNP O75368 CLONING ARTIFACT SEQADV 1WRY SER A 119 UNP O75368 CLONING ARTIFACT SEQADV 1WRY SER A 120 UNP O75368 CLONING ARTIFACT SEQADV 1WRY GLY A 121 UNP O75368 CLONING ARTIFACT SEQRES 1 A 121 GLY SER SER GLY SER SER GLY MET VAL ILE ARG VAL TYR SEQRES 2 A 121 ILE ALA SER SER SER GLY SER THR ALA ILE LYS LYS LYS SEQRES 3 A 121 GLN GLN ASP VAL LEU GLY PHE LEU GLU ALA ASN LYS ILE SEQRES 4 A 121 GLY PHE GLU GLU LYS ASP ILE ALA ALA ASN GLU GLU ASN SEQRES 5 A 121 ARG LYS TRP MET ARG GLU ASN VAL PRO GLU ASN SER ARG SEQRES 6 A 121 PRO ALA THR GLY TYR PRO LEU PRO PRO GLN ILE PHE ASN SEQRES 7 A 121 GLU SER GLN TYR ARG GLY ASP TYR ASP ALA PHE PHE GLU SEQRES 8 A 121 ALA ARG GLU ASN ASN ALA VAL TYR ALA PHE LEU GLY LEU SEQRES 9 A 121 THR ALA PRO PRO GLY SER LYS GLU ALA GLU VAL SER GLY SEQRES 10 A 121 PRO SER SER GLY HELIX 1 1 SER A 20 ASN A 37 1 18 HELIX 2 2 ASN A 49 VAL A 60 1 12 HELIX 3 3 TYR A 86 ASN A 95 1 10 HELIX 4 4 ALA A 97 LEU A 102 1 6 HELIX 5 5 SER A 110 VAL A 115 1 6 SHEET 1 A 4 PHE A 41 ASP A 45 0 SHEET 2 A 4 ILE A 10 ILE A 14 1 N ILE A 14 O LYS A 44 SHEET 3 A 4 GLN A 75 ASN A 78 -1 O GLN A 75 N TYR A 13 SHEET 4 A 4 GLN A 81 ASP A 85 -1 O GLY A 84 N ILE A 76 CISPEP 1 PRO A 73 PRO A 74 1 0.08 CISPEP 2 PRO A 73 PRO A 74 2 0.02 CISPEP 3 PRO A 73 PRO A 74 3 -0.05 CISPEP 4 PRO A 73 PRO A 74 4 0.04 CISPEP 5 PRO A 73 PRO A 74 5 0.03 CISPEP 6 PRO A 73 PRO A 74 6 0.06 CISPEP 7 PRO A 73 PRO A 74 7 0.00 CISPEP 8 PRO A 73 PRO A 74 8 -0.04 CISPEP 9 PRO A 73 PRO A 74 9 0.00 CISPEP 10 PRO A 73 PRO A 74 10 0.03 CISPEP 11 PRO A 73 PRO A 74 11 0.01 CISPEP 12 PRO A 73 PRO A 74 12 0.03 CISPEP 13 PRO A 73 PRO A 74 13 0.03 CISPEP 14 PRO A 73 PRO A 74 14 -0.01 CISPEP 15 PRO A 73 PRO A 74 15 -0.05 CISPEP 16 PRO A 73 PRO A 74 16 0.03 CISPEP 17 PRO A 73 PRO A 74 17 -0.01 CISPEP 18 PRO A 73 PRO A 74 18 0.02 CISPEP 19 PRO A 73 PRO A 74 19 -0.01 CISPEP 20 PRO A 73 PRO A 74 20 0.07 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1