HEADER ISOMERASE 22-NOV-04 1WTC TITLE CRYSTAL STRUCTURE OF S.POMBE SERINE RACEMASE COMPLEX WITH AMPPCP COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN C320.14 IN CHROMOSOME III; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SERINE RACEMASE; COMPND 5 EC: 5.1.1.16; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 4896; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-21A KEYWDS PLP, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GOTO,I.MIYAHARA,K.HIROTSU REVDAT 5 14-MAY-14 1WTC 1 TITLE REVDAT 4 13-JUL-11 1WTC 1 VERSN REVDAT 3 22-SEP-09 1WTC 1 JRNL REMARK REVDAT 2 24-FEB-09 1WTC 1 VERSN REVDAT 1 01-NOV-05 1WTC 0 JRNL AUTH M.GOTO,T.YAMAUCHI,N.KAMIYA,I.MIYAHARA,T.YOSHIMURA,H.MIHARA, JRNL AUTH 2 T.KURIHARA,K.HIROTSU,N.ESAKI JRNL TITL CRYSTAL STRUCTURE OF A HOMOLOG OF MAMMALIAN SERINE RACEMASE JRNL TITL 2 FROM SCHIZOSACCHAROMYCES POMBE JRNL REF J.BIOL.CHEM. V. 284 25944 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19640845 JRNL DOI 10.1074/JBC.M109.010470 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 5.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2260936.250 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.4 REMARK 3 NUMBER OF REFLECTIONS : 23721 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2353 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2958 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 324 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2397 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 265 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.70000 REMARK 3 B22 (A**2) : -5.96000 REMARK 3 B33 (A**2) : -1.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM SIGMAA (A) : 0.21 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.28 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.300 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.270 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.240 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.760 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 19.420; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 13.200; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.43 REMARK 3 BSOL : 61.22 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : PARAM.PLP REMARK 3 PARAMETER FILE 5 : PARAM.ETC REMARK 3 PARAMETER FILE 6 : ACP.PARAM REMARK 3 PARAMETER FILE 7 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : TOP.WAT REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : TOP.PLP REMARK 3 TOPOLOGY FILE 5 : INTSHIFF.TOP REMARK 3 TOPOLOGY FILE 6 : ACP.TOP REMARK 3 TOPOLOGY FILE 7 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WTC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-NOV-04. REMARK 100 THE RCSB ID CODE IS RCSB023976. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26679 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 32.275 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, PH 8.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.33100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 32.33100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.71300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.04600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.71300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.04600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.33100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.71300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.04600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 32.33100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.71300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 74.04600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 148.09200 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 64.66200 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 32.33100 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 ASN A 4 REMARK 465 LEU A 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 GLU A 252 CG CD OE1 OE2 REMARK 470 LYS A 253 CG CD CE NZ REMARK 470 GLU A 296 CG CD OE1 OE2 REMARK 470 LYS A 297 CG CD CE NZ REMARK 470 LYS A 299 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 53 CG MET A 53 SD -0.156 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 53 -8.80 75.00 REMARK 500 LYS A 130 79.96 -119.16 REMARK 500 TYR A 152 -38.35 -154.79 REMARK 500 PRO A 174 154.60 -46.56 REMARK 500 ALA A 199 78.69 -151.91 REMARK 500 ASN A 201 49.56 -98.48 REMARK 500 ASN A 213 39.06 -93.09 REMARK 500 ASP A 256 149.91 -176.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 360 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 468 O REMARK 620 2 GLY A 212 O 160.2 REMARK 620 3 HOH A 489 O 91.2 108.3 REMARK 620 4 ASP A 214 OD1 70.6 90.9 158.5 REMARK 620 5 HOH A 494 O 95.0 92.5 78.6 91.3 REMARK 620 6 GLU A 208 OE2 82.7 90.7 98.5 90.6 176.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 380 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 547 O REMARK 620 2 ACP A 370 O2B 178.9 REMARK 620 3 HOH A 454 O 95.2 84.2 REMARK 620 4 HOH A 528 O 88.0 91.1 85.3 REMARK 620 5 ACP A 370 O1G 91.3 89.6 161.3 112.5 REMARK 620 6 HOH A 431 O 92.1 88.8 90.1 175.4 72.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 360 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 380 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP A 350 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP A 370 DBREF 1WTC A 1 323 UNP O59791 YCNE_SCHPO 1 323 SEQRES 1 A 323 MET SER ASP ASN LEU VAL LEU PRO THR TYR ASP ASP VAL SEQRES 2 A 323 ALA SER ALA SER GLU ARG ILE LYS LYS PHE ALA ASN LYS SEQRES 3 A 323 THR PRO VAL LEU THR SER SER THR VAL ASN LYS GLU PHE SEQRES 4 A 323 VAL ALA GLU VAL PHE PHE LYS CYS GLU ASN PHE GLN LYS SEQRES 5 A 323 MET GLY ALA PHE LYS PHE ARG GLY ALA LEU ASN ALA LEU SEQRES 6 A 323 SER GLN LEU ASN GLU ALA GLN ARG LYS ALA GLY VAL LEU SEQRES 7 A 323 THR PHE SER SER GLY ASN HIS ALA GLN ALA ILE ALA LEU SEQRES 8 A 323 SER ALA LYS ILE LEU GLY ILE PRO ALA LYS ILE ILE MET SEQRES 9 A 323 PRO LEU ASP ALA PRO GLU ALA LYS VAL ALA ALA THR LYS SEQRES 10 A 323 GLY TYR GLY GLY GLN VAL ILE MET TYR ASP ARG TYR LYS SEQRES 11 A 323 ASP ASP ARG GLU LYS MET ALA LYS GLU ILE SER GLU ARG SEQRES 12 A 323 GLU GLY LEU THR ILE ILE PRO PRO TYR ASP HIS PRO HIS SEQRES 13 A 323 VAL LEU ALA GLY GLN GLY THR ALA ALA LYS GLU LEU PHE SEQRES 14 A 323 GLU GLU VAL GLY PRO LEU ASP ALA LEU PHE VAL CYS LEU SEQRES 15 A 323 GLY GLY GLY GLY LEU LEU SER GLY SER ALA LEU ALA ALA SEQRES 16 A 323 ARG HIS PHE ALA PRO ASN CYS GLU VAL TYR GLY VAL GLU SEQRES 17 A 323 PRO GLU ALA GLY ASN ASP GLY GLN GLN SER PHE ARG LYS SEQRES 18 A 323 GLY SER ILE VAL HIS ILE ASP THR PRO LYS THR ILE ALA SEQRES 19 A 323 ASP GLY ALA GLN THR GLN HIS LEU GLY ASN TYR THR PHE SEQRES 20 A 323 SER ILE ILE LYS GLU LYS VAL ASP ASP ILE LEU THR VAL SEQRES 21 A 323 SER ASP GLU GLU LEU ILE ASP CYS LEU LYS PHE TYR ALA SEQRES 22 A 323 ALA ARG MET LYS ILE VAL VAL GLU PRO THR GLY CYS LEU SEQRES 23 A 323 SER PHE ALA ALA ALA ARG ALA MET LYS GLU LYS LEU LYS SEQRES 24 A 323 ASN LYS ARG ILE GLY ILE ILE ILE SER GLY GLY ASN VAL SEQRES 25 A 323 ASP ILE GLU ARG TYR ALA HIS PHE LEU SER GLN HET MG A 360 1 HET MG A 380 1 HET PLP A 350 15 HET ACP A 370 31 HETNAM MG MAGNESIUM ION HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER HETSYN PLP VITAMIN B6 PHOSPHATE HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE FORMUL 2 MG 2(MG 2+) FORMUL 4 PLP C8 H10 N O6 P FORMUL 5 ACP C11 H18 N5 O12 P3 FORMUL 6 HOH *265(H2 O) HELIX 1 1 THR A 9 LYS A 21 1 13 HELIX 2 2 SER A 32 VAL A 40 1 9 HELIX 3 3 ASN A 49 PHE A 56 5 8 HELIX 4 4 LYS A 57 SER A 66 1 10 HELIX 5 5 ASN A 69 GLY A 76 1 8 HELIX 6 6 ASN A 84 LEU A 96 1 13 HELIX 7 7 PRO A 109 TYR A 119 1 11 HELIX 8 8 ASP A 132 GLU A 144 1 13 HELIX 9 9 HIS A 154 GLY A 173 1 20 HELIX 10 10 GLY A 185 ALA A 199 1 15 HELIX 11 11 ASN A 213 GLY A 222 1 10 HELIX 12 12 ALA A 234 GLN A 238 5 5 HELIX 13 13 GLY A 243 VAL A 254 1 12 HELIX 14 14 SER A 261 LYS A 277 1 17 HELIX 15 15 GLU A 281 GLY A 284 5 4 HELIX 16 16 CYS A 285 MET A 294 1 10 HELIX 17 17 LYS A 295 LYS A 299 5 5 HELIX 18 18 ASP A 313 SER A 322 1 10 SHEET 1 A 6 VAL A 29 LEU A 30 0 SHEET 2 A 6 GLU A 42 CYS A 47 -1 O PHE A 45 N LEU A 30 SHEET 3 A 6 ARG A 302 ILE A 307 1 O ILE A 305 N PHE A 44 SHEET 4 A 6 ALA A 177 CYS A 181 1 N PHE A 179 O GLY A 304 SHEET 5 A 6 GLU A 203 PRO A 209 1 O TYR A 205 N LEU A 178 SHEET 6 A 6 ASP A 256 VAL A 260 1 O LEU A 258 N GLY A 206 SHEET 1 B 3 VAL A 77 THR A 79 0 SHEET 2 B 3 ALA A 100 PRO A 105 1 O ILE A 103 N THR A 79 SHEET 3 B 3 GLN A 122 TYR A 126 1 O GLN A 122 N ALA A 100 LINK C4A PLP A 350 NZ LYS A 57 1555 1555 1.37 LINK MG MG A 360 O HOH A 468 1555 1555 2.52 LINK MG MG A 360 O GLY A 212 1555 1555 2.44 LINK MG MG A 360 O HOH A 489 1555 1555 2.41 LINK MG MG A 360 OD1 ASP A 214 1555 1555 2.31 LINK MG MG A 360 O HOH A 494 1555 1555 2.56 LINK MG MG A 360 OE2 GLU A 208 1555 1555 2.52 LINK MG MG A 380 O HOH A 547 1555 1555 2.34 LINK MG MG A 380 O2B ACP A 370 1555 1555 2.41 LINK MG MG A 380 O HOH A 454 1555 1555 2.43 LINK MG MG A 380 O HOH A 528 1555 1555 2.23 LINK MG MG A 380 O1G ACP A 370 1555 1555 2.41 LINK MG MG A 380 O HOH A 431 1555 1555 2.40 SITE 1 AC1 6 GLU A 208 GLY A 212 ASP A 214 HOH A 468 SITE 2 AC1 6 HOH A 489 HOH A 494 SITE 1 AC2 5 ACP A 370 HOH A 431 HOH A 454 HOH A 528 SITE 2 AC2 5 HOH A 547 SITE 1 AC3 16 PHE A 56 LYS A 57 ASN A 84 GLY A 183 SITE 2 AC3 16 GLY A 184 GLY A 185 GLY A 186 LEU A 187 SITE 3 AC3 16 GLY A 236 GLU A 281 THR A 283 SER A 308 SITE 4 AC3 16 HOH A 403 HOH A 419 HOH A 430 HOH A 614 SITE 1 AC4 29 ASN A 25 THR A 31 SER A 32 SER A 33 SITE 2 AC4 29 THR A 34 LYS A 52 MET A 53 ALA A 111 SITE 3 AC4 29 ALA A 114 ALA A 115 TYR A 119 ALA A 274 SITE 4 AC4 29 ARG A 275 LYS A 277 ASN A 311 MG A 380 SITE 5 AC4 29 HOH A 382 HOH A 394 HOH A 414 HOH A 417 SITE 6 AC4 29 HOH A 426 HOH A 431 HOH A 438 HOH A 528 SITE 7 AC4 29 HOH A 581 HOH A 588 HOH A 615 HOH A 616 SITE 8 AC4 29 HOH A 618 CRYST1 69.426 148.092 64.662 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014404 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006753 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015465 0.00000