data_1WTQ # _entry.id 1WTQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1WTQ NDB PD0611 RCSB RCSB023989 WWPDB D_1000023989 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1AZQ 'The wild-type Sac7d complexed with DNA GTAATTAC' unspecified PDB 1WTO 'SAC7D double mutant V26F/M29F in complex with DNA GCGATCGC' unspecified PDB 1WTP 'SAC7D single mutant M29F in complex with DNA GCGA(UBr)CGC' unspecified PDB 1WTR 'SAC7D single mutant M29A in complex with DNA GCGATCGC' unspecified PDB 1WTV 'SAC7D single mutant M29A in complex with DNA GTAATTAC' unspecified PDB 1WTW 'SAC7D single mutant V26A in complex with DNA GCGATCGC' unspecified PDB 1WTX 'SAC7D single mutant V26A in complex with DNA GTAATTAC' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1WTQ _pdbx_database_status.recvd_initial_deposition_date 2004-11-29 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chen, C.-Y.' 1 'Ko, T.-P.' 2 'Lin, T.-W.' 3 'Chou, C.-C.' 4 'Chen, C.-J.' 5 'Wang, A.H.-J.' 6 # _citation.id primary _citation.title 'Probing the DNA kink structure induced by the hyperthermophilic chromosomal protein Sac7d' _citation.journal_abbrev 'NUCLEIC ACIDS RES.' _citation.journal_volume 33 _citation.page_first 430 _citation.page_last 438 _citation.year 2005 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15653643 _citation.pdbx_database_id_DOI 10.1093/nar/gki191 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Chen, C.-Y.' 1 primary 'Ko, T.-P.' 2 primary 'Lin, T.-W.' 3 primary 'Chou, C.-C.' 4 primary 'Chen, C.-J.' 5 primary 'Wang, A.H.-J.' 6 # _cell.entry_id 1WTQ _cell.length_a 31.237 _cell.length_b 50.053 _cell.length_c 35.772 _cell.angle_alpha 90.00 _cell.angle_beta 108.96 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WTQ _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*TP*AP*AP*TP*TP*AP*C)-3'" 2425.629 2 ? ? ? ? 2 polymer man 'DNA-binding proteins 7a/7b/7d' 7642.892 1 ? M29F ? ? 3 water nat water 18.015 235 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name '7 KD HYPERTHERMOPHILE DNA-BINDING PROTEIN, 7 kDa DNA-binding proteins a/b/d, Sac7d' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DT)(DA)(DA)(DT)(DT)(DA)(DC)' GTAATTAC B,C ? 2 'polypeptide(L)' no no MVKVKFKYKGEEKEVDTSKIKKVWRVGKFVSFTYDDNGKTGRGAVSEKDAPKELLDMLARAEREKK MVKVKFKYKGEEKEVDTSKIKKVWRVGKFVSFTYDDNGKTGRGAVSEKDAPKELLDMLARAEREKK A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DT n 1 3 DA n 1 4 DA n 1 5 DT n 1 6 DT n 1 7 DA n 1 8 DC n 2 1 MET n 2 2 VAL n 2 3 LYS n 2 4 VAL n 2 5 LYS n 2 6 PHE n 2 7 LYS n 2 8 TYR n 2 9 LYS n 2 10 GLY n 2 11 GLU n 2 12 GLU n 2 13 LYS n 2 14 GLU n 2 15 VAL n 2 16 ASP n 2 17 THR n 2 18 SER n 2 19 LYS n 2 20 ILE n 2 21 LYS n 2 22 LYS n 2 23 VAL n 2 24 TRP n 2 25 ARG n 2 26 VAL n 2 27 GLY n 2 28 LYS n 2 29 PHE n 2 30 VAL n 2 31 SER n 2 32 PHE n 2 33 THR n 2 34 TYR n 2 35 ASP n 2 36 ASP n 2 37 ASN n 2 38 GLY n 2 39 LYS n 2 40 THR n 2 41 GLY n 2 42 ARG n 2 43 GLY n 2 44 ALA n 2 45 VAL n 2 46 SER n 2 47 GLU n 2 48 LYS n 2 49 ASP n 2 50 ALA n 2 51 PRO n 2 52 LYS n 2 53 GLU n 2 54 LEU n 2 55 LEU n 2 56 ASP n 2 57 MET n 2 58 LEU n 2 59 ALA n 2 60 ARG n 2 61 ALA n 2 62 GLU n 2 63 ARG n 2 64 GLU n 2 65 LYS n 2 66 LYS n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Sulfolobus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sulfolobus acidocaldarius' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2285 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET3B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP DN71_SULAC P13123 2 MVKVKFKYKGEEKEVDTSKIKKVWRVGKMVSFTYDDNGKTGRGAVSEKDAPKELLDMLARAEREKK 0 ? 2 PDB 1WTQ 1WTQ 1 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1WTQ A 1 ? 66 ? P13123 0 ? 65 ? 1 66 2 2 1WTQ B 1 ? 8 ? 1WTQ 101 ? 108 ? 101 108 3 2 1WTQ C 1 ? 8 ? 1WTQ 109 ? 116 ? 109 116 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1WTQ _struct_ref_seq_dif.mon_id PHE _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 29 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P13123 _struct_ref_seq_dif.db_mon_id MET _struct_ref_seq_dif.pdbx_seq_db_seq_num 28 _struct_ref_seq_dif.details ENGINEERED _struct_ref_seq_dif.pdbx_auth_seq_num 29 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1WTQ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.113 _exptl_crystal.density_percent_sol 40.2 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'PEG 400, Tris buffer, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'PEG 400' ? ? ? 1 2 1 'Tris buffer' ? ? ? 1 3 2 'PEG 400' ? ? ? 1 4 2 'Tris buffer' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 150 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2002-09-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-002' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1WTQ _reflns.observed_criterion_sigma_F 2 _reflns.observed_criterion_sigma_I 1 _reflns.d_resolution_high 1.70 _reflns.d_resolution_low 40.0 _reflns.number_all 11827 _reflns.number_obs 11165 _reflns.percent_possible_obs 94.4 _reflns.pdbx_Rmerge_I_obs 0.027 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 55.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.0 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.76 _reflns_shell.percent_possible_all 85.4 _reflns_shell.Rmerge_I_obs 0.068 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 14.9 _reflns_shell.pdbx_redundancy 3.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1183 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1WTQ _refine.ls_d_res_high 1.70 _refine.ls_d_res_low 40.0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 11553 _refine.ls_number_reflns_obs 10915 _refine.ls_number_reflns_R_free 1126 _refine.ls_percent_reflns_obs 94.5 _refine.ls_R_factor_all 0.181 _refine.ls_R_factor_obs 0.181 _refine.ls_R_factor_R_work 0.176 _refine.ls_R_factor_R_free 0.225 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1AZQ _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1WTQ _refine_analyze.Luzzati_coordinate_error_obs 0.18 _refine_analyze.Luzzati_sigma_a_obs 0.23 _refine_analyze.Luzzati_d_res_low_obs 5 _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 518 _refine_hist.pdbx_number_atoms_nucleic_acid 322 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 235 _refine_hist.number_atoms_total 1075 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 40.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.014 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.83 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 1.70 _refine_ls_shell.d_res_low 1.76 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.196 _refine_ls_shell.percent_reflns_obs 85.7 _refine_ls_shell.R_factor_R_free 0.241 _refine_ls_shell.R_factor_R_free_error 0.045 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 98 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 1WTQ _struct.title 'Hyperthermophile chromosomal protein SAC7D single mutant M29F in complex with DNA GTAATTAC' _struct.pdbx_descriptor 'DNA-binding proteins 7d/DNA Complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1WTQ _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' _struct_keywords.text ;COMPLEX CHROMATIN PROTEIN-DNA, MINOR-GROOVE DNA BINDING, ARCHEA, KINKED-DNA, INTERCALATION, Sac7d mutant, DNA BINDING PROTEIN-DNA COMPLEX ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id PRO _struct_conf.beg_label_asym_id C _struct_conf.beg_label_seq_id 51 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLU _struct_conf.end_label_asym_id C _struct_conf.end_label_seq_id 64 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id PRO _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 51 _struct_conf.end_auth_comp_id GLU _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 64 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 8 N3 ? ? B DG 101 C DC 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 8 O2 ? ? B DG 101 C DC 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 8 N4 ? ? B DG 101 C DC 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 7 N1 ? ? B DT 102 C DA 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 7 N6 ? ? B DT 102 C DA 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 6 N3 ? ? B DA 103 C DT 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 6 O4 ? ? B DA 103 C DT 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 5 N3 ? ? B DA 104 C DT 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 5 O4 ? ? B DA 104 C DT 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 4 N1 ? ? B DT 105 C DA 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 4 N6 ? ? B DT 105 C DA 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 3 N1 ? ? B DT 106 C DA 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 3 N6 ? ? B DT 106 C DA 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 2 N3 ? ? B DA 107 C DT 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 2 O4 ? ? B DA 107 C DT 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 1 N1 ? ? B DC 108 C DG 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 1 O6 ? ? B DC 108 C DG 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 1 N2 ? ? B DC 108 C DG 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS C 3 ? TYR C 8 ? LYS A 3 TYR A 8 A 2 GLU C 11 ? ASP C 16 ? GLU A 11 ASP A 16 B 1 ILE C 20 ? VAL C 26 ? ILE A 20 VAL A 26 B 2 PHE C 29 ? ASP C 35 ? PHE A 29 ASP A 35 B 3 THR C 40 ? SER C 46 ? THR A 40 SER A 46 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL C 4 ? N VAL A 4 O VAL C 15 ? O VAL A 15 B 1 2 N TRP C 24 ? N TRP A 24 O SER C 31 ? O SER A 31 B 2 3 N VAL C 30 ? N VAL A 30 O VAL C 45 ? O VAL A 45 # _database_PDB_matrix.entry_id 1WTQ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1WTQ _atom_sites.fract_transf_matrix[1][1] 0.032013 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.010998 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019979 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.029559 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 101 101 DG GUA B . n A 1 2 DT 2 102 102 DT THY B . n A 1 3 DA 3 103 103 DA ADE B . n A 1 4 DA 4 104 104 DA ADE B . n A 1 5 DT 5 105 105 DT THY B . n A 1 6 DT 6 106 106 DT THY B . n A 1 7 DA 7 107 107 DA ADE B . n A 1 8 DC 8 108 108 DC CYT B . n B 1 1 DG 1 109 109 DG GUA C . n B 1 2 DT 2 110 110 DT THY C . n B 1 3 DA 3 111 111 DA ADE C . n B 1 4 DA 4 112 112 DA ADE C . n B 1 5 DT 5 113 113 DT THY C . n B 1 6 DT 6 114 114 DT THY C . n B 1 7 DA 7 115 115 DA ADE C . n B 1 8 DC 8 116 116 DC CYT C . n C 2 1 MET 1 1 ? ? ? A . n C 2 2 VAL 2 2 2 VAL VAL A . n C 2 3 LYS 3 3 3 LYS LYS A . n C 2 4 VAL 4 4 4 VAL VAL A . n C 2 5 LYS 5 5 5 LYS LYS A . n C 2 6 PHE 6 6 6 PHE PHE A . n C 2 7 LYS 7 7 7 LYS LYS A . n C 2 8 TYR 8 8 8 TYR TYR A . n C 2 9 LYS 9 9 9 LYS LYS A . n C 2 10 GLY 10 10 10 GLY GLY A . n C 2 11 GLU 11 11 11 GLU GLU A . n C 2 12 GLU 12 12 12 GLU GLU A . n C 2 13 LYS 13 13 13 LYS LYS A . n C 2 14 GLU 14 14 14 GLU GLU A . n C 2 15 VAL 15 15 15 VAL VAL A . n C 2 16 ASP 16 16 16 ASP ASP A . n C 2 17 THR 17 17 17 THR THR A . n C 2 18 SER 18 18 18 SER SER A . n C 2 19 LYS 19 19 19 LYS LYS A . n C 2 20 ILE 20 20 20 ILE ILE A . n C 2 21 LYS 21 21 21 LYS LYS A . n C 2 22 LYS 22 22 22 LYS LYS A . n C 2 23 VAL 23 23 23 VAL VAL A . n C 2 24 TRP 24 24 24 TRP TRP A . n C 2 25 ARG 25 25 25 ARG ARG A . n C 2 26 VAL 26 26 26 VAL VAL A . n C 2 27 GLY 27 27 27 GLY GLY A . n C 2 28 LYS 28 28 28 LYS LYS A . n C 2 29 PHE 29 29 29 PHE PHE A . n C 2 30 VAL 30 30 30 VAL VAL A . n C 2 31 SER 31 31 31 SER SER A . n C 2 32 PHE 32 32 32 PHE PHE A . n C 2 33 THR 33 33 33 THR THR A . n C 2 34 TYR 34 34 34 TYR TYR A . n C 2 35 ASP 35 35 35 ASP ASP A . n C 2 36 ASP 36 36 36 ASP ASP A . n C 2 37 ASN 37 37 37 ASN ASN A . n C 2 38 GLY 38 38 38 GLY GLY A . n C 2 39 LYS 39 39 39 LYS LYS A . n C 2 40 THR 40 40 40 THR THR A . n C 2 41 GLY 41 41 41 GLY GLY A . n C 2 42 ARG 42 42 42 ARG ARG A . n C 2 43 GLY 43 43 43 GLY GLY A . n C 2 44 ALA 44 44 44 ALA ALA A . n C 2 45 VAL 45 45 45 VAL VAL A . n C 2 46 SER 46 46 46 SER SER A . n C 2 47 GLU 47 47 47 GLU GLU A . n C 2 48 LYS 48 48 48 LYS LYS A . n C 2 49 ASP 49 49 49 ASP ASP A . n C 2 50 ALA 50 50 50 ALA ALA A . n C 2 51 PRO 51 51 51 PRO PRO A . n C 2 52 LYS 52 52 52 LYS LYS A . n C 2 53 GLU 53 53 53 GLU GLU A . n C 2 54 LEU 54 54 54 LEU LEU A . n C 2 55 LEU 55 55 55 LEU LEU A . n C 2 56 ASP 56 56 56 ASP ASP A . n C 2 57 MET 57 57 57 MET MET A . n C 2 58 LEU 58 58 58 LEU LEU A . n C 2 59 ALA 59 59 59 ALA ALA A . n C 2 60 ARG 60 60 60 ARG ARG A . n C 2 61 ALA 61 61 61 ALA ALA A . n C 2 62 GLU 62 62 62 GLU GLU A . n C 2 63 ARG 63 63 63 ARG ARG A . n C 2 64 GLU 64 64 64 GLU GLU A . n C 2 65 LYS 65 65 65 LYS LYS A . n C 2 66 LYS 66 66 ? ? ? A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-02-22 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 CNS refinement . ? 3 CNS phasing . ? 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OD1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASP _pdbx_validate_close_contact.auth_seq_id_1 16 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 415 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.13 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O3'" C DT 114 ? ? P C DA 115 ? ? "O5'" C DA 115 ? ? 92.58 104.00 -11.42 1.90 Y 2 1 "C5'" C DA 115 ? ? "C4'" C DA 115 ? ? "C3'" C DA 115 ? ? 95.33 114.10 -18.77 1.80 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 21 ? ? -114.78 -87.20 2 1 ASP A 36 ? ? -116.86 66.08 3 1 ASN A 37 ? ? 43.74 74.37 4 1 GLU A 64 ? ? -56.72 -9.62 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DT _pdbx_validate_planes.auth_asym_id C _pdbx_validate_planes.auth_seq_id 110 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.076 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? C MET 1 2 1 Y 1 A LYS 66 ? C LYS 66 # _ndb_struct_conf_na.entry_id 1WTQ _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 8 1_555 -0.362 -0.143 0.046 -1.643 -3.359 -1.566 1 B_DG101:DC116_C B 101 ? C 116 ? 19 1 1 A DT 2 1_555 B DA 7 1_555 0.016 -0.121 0.075 8.239 -4.324 -0.755 2 B_DT102:DA115_C B 102 ? C 115 ? 20 1 1 A DA 3 1_555 B DT 6 1_555 -0.024 -0.010 0.548 26.927 -2.339 4.331 3 B_DA103:DT114_C B 103 ? C 114 ? 20 1 1 A DA 4 1_555 B DT 5 1_555 0.049 -0.031 -0.302 -26.404 10.561 -0.303 4 B_DA104:DT113_C B 104 ? C 113 ? 20 1 1 A DT 5 1_555 B DA 4 1_555 -0.203 -0.030 0.114 -5.978 -2.562 5.633 5 B_DT105:DA112_C B 105 ? C 112 ? 20 1 1 A DT 6 1_555 B DA 3 1_555 -0.037 -0.176 -0.219 0.653 -11.060 0.457 6 B_DT106:DA111_C B 106 ? C 111 ? 20 1 1 A DA 7 1_555 B DT 2 1_555 0.389 -0.040 -0.003 6.531 -12.640 -0.588 7 B_DA107:DT110_C B 107 ? C 110 ? 20 1 1 A DC 8 1_555 B DG 1 1_555 0.240 -0.139 -0.118 4.968 -3.087 0.557 8 B_DC108:DG109_C B 108 ? C 109 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 8 1_555 A DT 2 1_555 B DA 7 1_555 -0.282 -0.451 3.099 -0.844 -1.544 32.770 -0.546 0.362 3.123 -2.735 1.495 32.816 1 BB_DG101DT102:DA115DC116_CC B 101 ? C 116 ? B 102 ? C 115 ? 1 A DT 2 1_555 B DA 7 1_555 A DA 3 1_555 B DT 6 1_555 0.085 -0.445 2.856 -3.729 2.123 25.298 -1.522 -1.103 2.769 4.804 8.437 25.653 2 BB_DT102DA103:DT114DA115_CC B 102 ? C 115 ? B 103 ? C 114 ? 1 A DA 3 1_555 B DT 6 1_555 A DA 4 1_555 B DT 5 1_555 -0.322 1.467 6.276 0.890 58.118 26.116 -4.794 0.402 4.024 67.868 -1.039 63.253 3 BB_DA103DA104:DT113DT114_CC B 103 ? C 114 ? B 104 ? C 113 ? 1 A DA 4 1_555 B DT 5 1_555 A DT 5 1_555 B DA 4 1_555 0.211 -0.066 2.916 -4.799 8.698 17.338 -3.776 -2.586 2.457 26.240 14.475 19.964 4 BB_DA104DT105:DA112DT113_CC B 104 ? C 113 ? B 105 ? C 112 ? 1 A DT 5 1_555 B DA 4 1_555 A DT 6 1_555 B DA 3 1_555 -0.383 -0.488 3.113 3.378 -2.112 31.076 -0.525 1.316 3.081 -3.922 -6.272 31.324 5 BB_DT105DT106:DA111DA112_CC B 105 ? C 112 ? B 106 ? C 111 ? 1 A DT 6 1_555 B DA 3 1_555 A DA 7 1_555 B DT 2 1_555 -0.213 0.783 3.349 1.531 6.912 37.189 0.280 0.534 3.424 10.718 -2.374 37.833 6 BB_DT106DA107:DT110DA111_CC B 106 ? C 111 ? B 107 ? C 110 ? 1 A DA 7 1_555 B DT 2 1_555 A DC 8 1_555 B DG 1 1_555 0.924 -0.464 3.356 -1.484 -1.810 35.304 -0.491 -1.745 3.334 -2.980 2.443 35.379 7 BB_DA107DC108:DG109DT110_CC B 107 ? C 110 ? B 108 ? C 109 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 HOH 1 206 206 HOH TIP B . D 3 HOH 2 212 212 HOH TIP B . D 3 HOH 3 214 214 HOH TIP B . D 3 HOH 4 219 219 HOH TIP B . D 3 HOH 5 221 221 HOH TIP B . D 3 HOH 6 229 229 HOH TIP B . D 3 HOH 7 230 230 HOH TIP B . D 3 HOH 8 231 231 HOH TIP B . D 3 HOH 9 236 236 HOH TIP B . D 3 HOH 10 237 237 HOH TIP B . D 3 HOH 11 239 239 HOH TIP B . D 3 HOH 12 242 242 HOH TIP B . D 3 HOH 13 246 246 HOH TIP B . D 3 HOH 14 250 250 HOH TIP B . D 3 HOH 15 252 252 HOH TIP B . D 3 HOH 16 259 259 HOH TIP B . D 3 HOH 17 260 260 HOH TIP B . D 3 HOH 18 266 266 HOH TIP B . D 3 HOH 19 277 277 HOH TIP B . D 3 HOH 20 279 279 HOH TIP B . D 3 HOH 21 282 282 HOH TIP B . D 3 HOH 22 290 290 HOH TIP B . D 3 HOH 23 291 291 HOH TIP B . D 3 HOH 24 293 293 HOH TIP B . D 3 HOH 25 297 297 HOH TIP B . D 3 HOH 26 302 302 HOH TIP B . D 3 HOH 27 313 313 HOH TIP B . D 3 HOH 28 326 326 HOH TIP B . D 3 HOH 29 332 332 HOH TIP B . D 3 HOH 30 341 341 HOH TIP B . D 3 HOH 31 350 350 HOH TIP B . D 3 HOH 32 353 353 HOH TIP B . D 3 HOH 33 360 360 HOH TIP B . D 3 HOH 34 361 361 HOH TIP B . D 3 HOH 35 362 362 HOH TIP B . D 3 HOH 36 365 365 HOH TIP B . D 3 HOH 37 371 371 HOH TIP B . D 3 HOH 38 374 374 HOH TIP B . D 3 HOH 39 375 375 HOH TIP B . D 3 HOH 40 376 376 HOH TIP B . D 3 HOH 41 379 379 HOH TIP B . D 3 HOH 42 380 380 HOH TIP B . D 3 HOH 43 389 389 HOH TIP B . D 3 HOH 44 392 392 HOH TIP B . D 3 HOH 45 396 396 HOH TIP B . D 3 HOH 46 397 397 HOH TIP B . D 3 HOH 47 398 398 HOH TIP B . D 3 HOH 48 399 399 HOH TIP B . D 3 HOH 49 400 400 HOH TIP B . D 3 HOH 50 401 401 HOH TIP B . D 3 HOH 51 404 404 HOH TIP B . D 3 HOH 52 406 406 HOH TIP B . D 3 HOH 53 407 407 HOH TIP B . D 3 HOH 54 409 409 HOH TIP B . D 3 HOH 55 410 410 HOH TIP B . D 3 HOH 56 431 431 HOH TIP B . D 3 HOH 57 432 432 HOH TIP B . D 3 HOH 58 435 435 HOH TIP B . E 3 HOH 1 204 204 HOH TIP C . E 3 HOH 2 213 213 HOH TIP C . E 3 HOH 3 216 216 HOH TIP C . E 3 HOH 4 217 217 HOH TIP C . E 3 HOH 5 220 220 HOH TIP C . E 3 HOH 6 227 227 HOH TIP C . E 3 HOH 7 234 234 HOH TIP C . E 3 HOH 8 235 235 HOH TIP C . E 3 HOH 9 238 238 HOH TIP C . E 3 HOH 10 245 245 HOH TIP C . E 3 HOH 11 262 262 HOH TIP C . E 3 HOH 12 264 264 HOH TIP C . E 3 HOH 13 265 265 HOH TIP C . E 3 HOH 14 270 270 HOH TIP C . E 3 HOH 15 272 272 HOH TIP C . E 3 HOH 16 273 273 HOH TIP C . E 3 HOH 17 276 276 HOH TIP C . E 3 HOH 18 278 278 HOH TIP C . E 3 HOH 19 283 283 HOH TIP C . E 3 HOH 20 288 288 HOH TIP C . E 3 HOH 21 289 289 HOH TIP C . E 3 HOH 22 292 292 HOH TIP C . E 3 HOH 23 294 294 HOH TIP C . E 3 HOH 24 295 295 HOH TIP C . E 3 HOH 25 298 298 HOH TIP C . E 3 HOH 26 301 301 HOH TIP C . E 3 HOH 27 303 303 HOH TIP C . E 3 HOH 28 304 304 HOH TIP C . E 3 HOH 29 307 307 HOH TIP C . E 3 HOH 30 308 308 HOH TIP C . E 3 HOH 31 309 309 HOH TIP C . E 3 HOH 32 310 310 HOH TIP C . E 3 HOH 33 311 311 HOH TIP C . E 3 HOH 34 312 312 HOH TIP C . E 3 HOH 35 314 314 HOH TIP C . E 3 HOH 36 315 315 HOH TIP C . E 3 HOH 37 316 316 HOH TIP C . E 3 HOH 38 327 327 HOH TIP C . E 3 HOH 39 334 334 HOH TIP C . E 3 HOH 40 339 339 HOH TIP C . E 3 HOH 41 357 357 HOH TIP C . E 3 HOH 42 359 359 HOH TIP C . E 3 HOH 43 363 363 HOH TIP C . E 3 HOH 44 367 367 HOH TIP C . E 3 HOH 45 369 369 HOH TIP C . E 3 HOH 46 383 383 HOH TIP C . E 3 HOH 47 386 386 HOH TIP C . E 3 HOH 48 387 387 HOH TIP C . E 3 HOH 49 421 421 HOH TIP C . E 3 HOH 50 425 425 HOH TIP C . F 3 HOH 1 201 201 HOH TIP A . F 3 HOH 2 202 202 HOH TIP A . F 3 HOH 3 203 203 HOH TIP A . F 3 HOH 4 205 205 HOH TIP A . F 3 HOH 5 207 207 HOH TIP A . F 3 HOH 6 208 208 HOH TIP A . F 3 HOH 7 209 209 HOH TIP A . F 3 HOH 8 210 210 HOH TIP A . F 3 HOH 9 211 211 HOH TIP A . F 3 HOH 10 215 215 HOH TIP A . F 3 HOH 11 218 218 HOH TIP A . F 3 HOH 12 222 222 HOH TIP A . F 3 HOH 13 223 223 HOH TIP A . F 3 HOH 14 224 224 HOH TIP A . F 3 HOH 15 225 225 HOH TIP A . F 3 HOH 16 226 226 HOH TIP A . F 3 HOH 17 228 228 HOH TIP A . F 3 HOH 18 232 232 HOH TIP A . F 3 HOH 19 233 233 HOH TIP A . F 3 HOH 20 240 240 HOH TIP A . F 3 HOH 21 241 241 HOH TIP A . F 3 HOH 22 243 243 HOH TIP A . F 3 HOH 23 244 244 HOH TIP A . F 3 HOH 24 247 247 HOH TIP A . F 3 HOH 25 248 248 HOH TIP A . F 3 HOH 26 249 249 HOH TIP A . F 3 HOH 27 251 251 HOH TIP A . F 3 HOH 28 253 253 HOH TIP A . F 3 HOH 29 254 254 HOH TIP A . F 3 HOH 30 255 255 HOH TIP A . F 3 HOH 31 256 256 HOH TIP A . F 3 HOH 32 257 257 HOH TIP A . F 3 HOH 33 258 258 HOH TIP A . F 3 HOH 34 261 261 HOH TIP A . F 3 HOH 35 263 263 HOH TIP A . F 3 HOH 36 267 267 HOH TIP A . F 3 HOH 37 268 268 HOH TIP A . F 3 HOH 38 269 269 HOH TIP A . F 3 HOH 39 271 271 HOH TIP A . F 3 HOH 40 274 274 HOH TIP A . F 3 HOH 41 275 275 HOH TIP A . F 3 HOH 42 280 280 HOH TIP A . F 3 HOH 43 281 281 HOH TIP A . F 3 HOH 44 284 284 HOH TIP A . F 3 HOH 45 285 285 HOH TIP A . F 3 HOH 46 286 286 HOH TIP A . F 3 HOH 47 287 287 HOH TIP A . F 3 HOH 48 296 296 HOH TIP A . F 3 HOH 49 299 299 HOH TIP A . F 3 HOH 50 300 300 HOH TIP A . F 3 HOH 51 305 305 HOH TIP A . F 3 HOH 52 306 306 HOH TIP A . F 3 HOH 53 317 317 HOH TIP A . F 3 HOH 54 318 318 HOH TIP A . F 3 HOH 55 319 319 HOH TIP A . F 3 HOH 56 320 320 HOH TIP A . F 3 HOH 57 321 321 HOH TIP A . F 3 HOH 58 322 322 HOH TIP A . F 3 HOH 59 323 323 HOH TIP A . F 3 HOH 60 324 324 HOH TIP A . F 3 HOH 61 325 325 HOH TIP A . F 3 HOH 62 328 328 HOH TIP A . F 3 HOH 63 329 329 HOH TIP A . F 3 HOH 64 330 330 HOH TIP A . F 3 HOH 65 331 331 HOH TIP A . F 3 HOH 66 333 333 HOH TIP A . F 3 HOH 67 335 335 HOH TIP A . F 3 HOH 68 336 336 HOH TIP A . F 3 HOH 69 337 337 HOH TIP A . F 3 HOH 70 338 338 HOH TIP A . F 3 HOH 71 340 340 HOH TIP A . F 3 HOH 72 342 342 HOH TIP A . F 3 HOH 73 343 343 HOH TIP A . F 3 HOH 74 344 344 HOH TIP A . F 3 HOH 75 345 345 HOH TIP A . F 3 HOH 76 346 346 HOH TIP A . F 3 HOH 77 347 347 HOH TIP A . F 3 HOH 78 348 348 HOH TIP A . F 3 HOH 79 349 349 HOH TIP A . F 3 HOH 80 351 351 HOH TIP A . F 3 HOH 81 352 352 HOH TIP A . F 3 HOH 82 354 354 HOH TIP A . F 3 HOH 83 355 355 HOH TIP A . F 3 HOH 84 356 356 HOH TIP A . F 3 HOH 85 358 358 HOH TIP A . F 3 HOH 86 364 364 HOH TIP A . F 3 HOH 87 366 366 HOH TIP A . F 3 HOH 88 368 368 HOH TIP A . F 3 HOH 89 370 370 HOH TIP A . F 3 HOH 90 372 372 HOH TIP A . F 3 HOH 91 373 373 HOH TIP A . F 3 HOH 92 377 377 HOH TIP A . F 3 HOH 93 378 378 HOH TIP A . F 3 HOH 94 381 381 HOH TIP A . F 3 HOH 95 382 382 HOH TIP A . F 3 HOH 96 384 384 HOH TIP A . F 3 HOH 97 385 385 HOH TIP A . F 3 HOH 98 388 388 HOH TIP A . F 3 HOH 99 390 390 HOH TIP A . F 3 HOH 100 391 391 HOH TIP A . F 3 HOH 101 393 393 HOH TIP A . F 3 HOH 102 394 394 HOH TIP A . F 3 HOH 103 395 395 HOH TIP A . F 3 HOH 104 402 402 HOH TIP A . F 3 HOH 105 403 403 HOH TIP A . F 3 HOH 106 405 405 HOH TIP A . F 3 HOH 107 408 408 HOH TIP A . F 3 HOH 108 411 411 HOH TIP A . F 3 HOH 109 412 412 HOH TIP A . F 3 HOH 110 413 413 HOH TIP A . F 3 HOH 111 414 414 HOH TIP A . F 3 HOH 112 415 415 HOH TIP A . F 3 HOH 113 416 416 HOH TIP A . F 3 HOH 114 417 417 HOH TIP A . F 3 HOH 115 418 418 HOH TIP A . F 3 HOH 116 419 419 HOH TIP A . F 3 HOH 117 420 420 HOH TIP A . F 3 HOH 118 422 422 HOH TIP A . F 3 HOH 119 423 423 HOH TIP A . F 3 HOH 120 424 424 HOH TIP A . F 3 HOH 121 426 426 HOH TIP A . F 3 HOH 122 427 427 HOH TIP A . F 3 HOH 123 428 428 HOH TIP A . F 3 HOH 124 429 429 HOH TIP A . F 3 HOH 125 430 430 HOH TIP A . F 3 HOH 126 433 433 HOH TIP A . F 3 HOH 127 434 434 HOH TIP A . #