HEADER OXIDOREDUCTASE 07-DEC-04 1WUI TITLE ULTRA-HIGH RESOLUTION STRUCTURE OF THE NI-A STATE OF [NIFE]HYDROGENASE TITLE 2 FROM DESULUFOVIBRIO VULGARIS MIYAZAKI F COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIPLASMIC [NIFE] HYDROGENASE SMALL SUBUNIT; COMPND 3 CHAIN: S; COMPND 4 SYNONYM: NIFE HYDROGENLYASE SMALL CHAIN; COMPND 5 EC: 1.12.2.1; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PERIPLASMIC [NIFE] HYDROGENASE LARGE SUBUNIT; COMPND 8 CHAIN: L; COMPND 9 FRAGMENT: RESIDUES 19-552; COMPND 10 SYNONYM: NIFE HYDROGENLYASE LARGE CHAIN; COMPND 11 EC: 1.12.2.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO VULGARIS STR. 'MIYAZAKI F'; SOURCE 3 ORGANISM_TAXID: 883; SOURCE 4 STRAIN: MIYAZAKI F; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: DESULFOVIBRIO VULGARIS STR. 'MIYAZAKI F'; SOURCE 7 ORGANISM_TAXID: 883; SOURCE 8 STRAIN: MIYAZAKI F KEYWDS HIGH RESOLUTION CRYSTAL STRUCTURE, [NIFE]HYDROGENASE, OXIDOREDUCTASE, KEYWDS 2 NI-A STATE, UNREADY STATE EXPDTA X-RAY DIFFRACTION AUTHOR H.OGATA,S.HIROTA,A.NAKAHARA,H.KOMORI,N.SHIBATA,T.KATO,K.KANO, AUTHOR 2 Y.HIGUCHI REVDAT 4 16-OCT-24 1WUI 1 REMARK LINK REVDAT 3 04-SEP-19 1WUI 1 LINK ATOM REVDAT 2 24-JUN-08 1WUI 1 JRNL VERSN REVDAT 1 07-DEC-05 1WUI 0 JRNL AUTH H.OGATA,S.HIROTA,A.NAKAHARA,H.KOMORI,N.SHIBATA,T.KATO, JRNL AUTH 2 K.KANO,Y.HIGUCHI JRNL TITL ACTIVATION PROCESS OF [NIFE] HYDROGENASE ELUCIDATED BY JRNL TITL 2 HIGH-RESOLUTION X-RAY ANALYSES: CONVERSION OF THE READY TO JRNL TITL 3 THE UNREADY STATE JRNL REF STRUCTURE V. 13 1635 2005 JRNL REFN ISSN 0969-2126 JRNL PMID 16271886 JRNL DOI 10.1016/J.STR.2005.07.018 REMARK 2 REMARK 2 RESOLUTION. 1.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.109 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.098 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.134 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 26539 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 379245 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.096 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 270529 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6198 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 995 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 7257.7 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 5899.0 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 3 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 65491 REMARK 3 NUMBER OF RESTRAINTS : 79201 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.017 REMARK 3 ANGLE DISTANCES (A) : 0.033 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.030 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.097 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.100 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.130 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.006 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.048 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.115 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WUI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-DEC-04. REMARK 100 THE DEPOSITION ID IS D_1000024014. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.7000 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 379376 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.040 REMARK 200 RESOLUTION RANGE LOW (A) : 30.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, PH 7.4, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 49.03450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.19000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.98300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.19000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.03450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.98300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -139.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: S, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS L 75 NE2 HIS L 75 CD2 -0.068 REMARK 500 GLU L 433 CB GLU L 433 CG -0.199 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU S 1 CA - CB - CG ANGL. DEV. = 47.4 DEGREES REMARK 500 LEU S 1 CB - CG - CD1 ANGL. DEV. = -12.5 DEGREES REMARK 500 LEU S 1 CB - CG - CD2 ANGL. DEV. = 11.2 DEGREES REMARK 500 LEU S 1 O - C - N ANGL. DEV. = 18.2 DEGREES REMARK 500 GLY S 3 C - N - CA ANGL. DEV. = 26.2 DEGREES REMARK 500 GLY S 3 CA - C - O ANGL. DEV. = 13.6 DEGREES REMARK 500 GLY S 3 O - C - N ANGL. DEV. = -14.7 DEGREES REMARK 500 ARG S 5 CA - C - O ANGL. DEV. = -16.5 DEGREES REMARK 500 ARG S 5 CA - C - N ANGL. DEV. = 18.3 DEGREES REMARK 500 ASP S 33 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 GLU S 57 OE1 - CD - OE2 ANGL. DEV. = -10.8 DEGREES REMARK 500 LEU S 95 O - C - N ANGL. DEV. = -9.9 DEGREES REMARK 500 ASP S 96 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG S 100 CD - NE - CZ ANGL. DEV. = 20.4 DEGREES REMARK 500 MET S 181 CG - SD - CE ANGL. DEV. = 10.2 DEGREES REMARK 500 ASP S 256 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 SER L 20 N - CA - CB ANGL. DEV. = 9.4 DEGREES REMARK 500 SER L 20 CA - C - O ANGL. DEV. = 14.1 DEGREES REMARK 500 ARG L 32 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG L 38 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 LYS L 49 CA - CB - CG ANGL. DEV. = 20.3 DEGREES REMARK 500 LYS L 49 CD - CE - NZ ANGL. DEV. = 14.6 DEGREES REMARK 500 PHE L 136 CB - CG - CD2 ANGL. DEV. = -4.7 DEGREES REMARK 500 PHE L 136 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES REMARK 500 PHE L 136 CB - CG - CD1 ANGL. DEV. = -6.6 DEGREES REMARK 500 ARG L 160 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 TYR L 190 CB - CG - CD2 ANGL. DEV. = 4.1 DEGREES REMARK 500 HIS L 195 CG - ND1 - CE1 ANGL. DEV. = 12.4 DEGREES REMARK 500 HIS L 195 ND1 - CE1 - NE2 ANGL. DEV. = -8.3 DEGREES REMARK 500 PRO L 196 O - C - N ANGL. DEV. = -10.3 DEGREES REMARK 500 ARG L 217 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG L 224 NH1 - CZ - NH2 ANGL. DEV. = -10.1 DEGREES REMARK 500 ARG L 224 NE - CZ - NH2 ANGL. DEV. = 7.7 DEGREES REMARK 500 TYR L 273 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES REMARK 500 PHE L 299 CB - CG - CD2 ANGL. DEV. = 5.0 DEGREES REMARK 500 ASP L 363 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP L 368 CB - CG - OD1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP L 368 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG L 426 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG L 430 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 GLU L 433 CA - CB - CG ANGL. DEV. = 17.0 DEGREES REMARK 500 ARG L 487 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG L 509 NE - CZ - NH1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG L 509 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG L 532 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET S 2 142.61 -176.15 REMARK 500 PRO S 4 -166.62 -72.27 REMARK 500 ARG S 5 -67.95 52.12 REMARK 500 ASN S 14 -124.22 -98.44 REMARK 500 HIS S 45 104.30 -168.47 REMARK 500 LYS S 235 179.36 59.77 REMARK 500 THR S 239 -25.21 -152.61 REMARK 500 TYR L 86 -39.35 69.25 REMARK 500 ALA L 231 -48.98 85.16 REMARK 500 HIS L 235 86.23 73.04 REMARK 500 GLN L 237 66.65 -153.37 REMARK 500 PHE L 238 -2.92 -141.30 REMARK 500 VAL L 272 -62.08 -121.84 REMARK 500 PHE L 302 69.17 78.55 REMARK 500 ASP L 363 173.38 70.14 REMARK 500 TYR L 370 15.62 -149.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET S 2 GLY S 3 149.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG S 26 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 S1001 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS S 17 SG REMARK 620 2 SF4 S1001 S2 102.7 REMARK 620 3 SF4 S1001 S3 121.0 106.4 REMARK 620 4 SF4 S1001 S4 115.6 105.7 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 S1001 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS S 20 SG REMARK 620 2 SF4 S1001 S1 104.7 REMARK 620 3 SF4 S1001 S2 120.2 102.7 REMARK 620 4 SF4 S1001 S3 117.2 103.1 106.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 S1001 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS S 114 SG REMARK 620 2 SF4 S1001 S1 110.1 REMARK 620 3 SF4 S1001 S3 129.4 103.5 REMARK 620 4 SF4 S1001 S4 99.2 109.2 104.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 S1001 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS S 150 SG REMARK 620 2 SF4 S1001 S1 111.8 REMARK 620 3 SF4 S1001 S2 124.9 103.1 REMARK 620 4 SF4 S1001 S4 103.9 107.8 104.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 S1002 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS S 188 ND1 REMARK 620 2 SF4 S1002 S2 103.6 REMARK 620 3 SF4 S1002 S3 114.6 105.7 REMARK 620 4 SF4 S1002 S4 120.5 107.4 104.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 S1002 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS S 191 SG REMARK 620 2 SF4 S1002 S1 121.5 REMARK 620 3 SF4 S1002 S2 112.9 103.4 REMARK 620 4 SF4 S1002 S4 105.8 105.5 106.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 S1002 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS S 216 SG REMARK 620 2 SF4 S1002 S1 120.4 REMARK 620 3 SF4 S1002 S2 119.6 103.7 REMARK 620 4 SF4 S1002 S3 101.3 104.3 105.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 S1002 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS S 222 SG REMARK 620 2 SF4 S1002 S1 117.8 REMARK 620 3 SF4 S1002 S3 113.1 104.3 REMARK 620 4 SF4 S1002 S4 110.3 106.4 103.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S S1003 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS S 231 SG REMARK 620 2 F3S S1003 S1 117.6 REMARK 620 3 F3S S1003 S3 110.4 102.9 REMARK 620 4 F3S S1003 S4 109.3 112.5 102.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S S1003 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS S 249 SG REMARK 620 2 F3S S1003 S1 115.3 REMARK 620 3 F3S S1003 S2 110.8 112.5 REMARK 620 4 F3S S1003 S3 111.2 102.6 103.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 F3S S1003 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS S 252 SG REMARK 620 2 F3S S1003 S2 110.8 REMARK 620 3 F3S S1003 S3 117.8 103.7 REMARK 620 4 F3S S1003 S4 106.3 115.2 103.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG L1005 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU L 62 OE2 REMARK 620 2 LEU L 498 O 97.0 REMARK 620 3 HIS L 552 NE2 87.7 90.0 REMARK 620 4 HOH L5001 O 87.2 90.0 174.8 REMARK 620 5 HOH L5002 O 177.4 85.5 91.9 93.2 REMARK 620 6 HOH L5003 O 88.8 173.9 92.1 88.4 88.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NFC L1004 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS L 81 SG REMARK 620 2 NFC L1004 O4 155.5 REMARK 620 3 CSO L 84 OD 66.5 115.7 REMARK 620 4 CSO L 84 SG 104.2 84.3 38.3 REMARK 620 5 CSO L 546 SG 87.1 86.2 153.3 168.5 REMARK 620 6 CSO L 546 OD 79.9 112.0 126.6 131.6 47.4 REMARK 620 7 CYS L 549 SG 109.4 95.1 91.9 72.9 101.6 60.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NFC L1004 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CSO L 84 SG REMARK 620 2 NFC L1004 C3 97.9 REMARK 620 3 NFC L1004 C2 94.2 87.5 REMARK 620 4 NFC L1004 C1 168.6 92.3 91.1 REMARK 620 5 NFC L1004 O4 81.5 175.7 88.3 88.6 REMARK 620 6 CYS L 549 SG 81.2 96.4 174.3 92.8 87.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG L 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 S 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 S 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE F3S S 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NFC L 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD L 2006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD S 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD S 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD S 2007 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1WUH RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH NFC REMARK 900 RELATED ID: 1WUJ RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH NFB REMARK 900 RELATED ID: 1WUK RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH NFO REMARK 900 RELATED ID: 1WUL RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH NFR REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE ARE DIFFERENCES BETWEEN THE SEQRES AND THE SEQUENCE REMARK 999 DATABASE. THE DEPOSITORS BELIEVE THAT THESE RESIDUES ARE REMARK 999 CORRECT AND SWISSPROT IS INCORRECT AT THESE POSITIONS. DBREF 1WUI S 1 267 UNP P21853 PHNS_DESVM 51 317 DBREF 1WUI L 19 552 UNP P21852 PHNL_DESVM 19 552 SEQADV 1WUI LYS L 514 UNP P21852 ASN 514 SEE REMARK 999 SEQADV 1WUI LEU L 515 UNP P21852 VAL 515 SEE REMARK 999 SEQRES 1 S 267 LEU MET GLY PRO ARG ARG PRO SER VAL VAL TYR LEU HIS SEQRES 2 S 267 ASN ALA GLU CYS THR GLY CYS SER GLU SER VAL LEU ARG SEQRES 3 S 267 ALA PHE GLU PRO TYR ILE ASP THR LEU ILE LEU ASP THR SEQRES 4 S 267 LEU SER LEU ASP TYR HIS GLU THR ILE MET ALA ALA ALA SEQRES 5 S 267 GLY ASP ALA ALA GLU ALA ALA LEU GLU GLN ALA VAL ASN SEQRES 6 S 267 SER PRO HIS GLY PHE ILE ALA VAL VAL GLU GLY GLY ILE SEQRES 7 S 267 PRO THR ALA ALA ASN GLY ILE TYR GLY LYS VAL ALA ASN SEQRES 8 S 267 HIS THR MET LEU ASP ILE CYS SER ARG ILE LEU PRO LYS SEQRES 9 S 267 ALA GLN ALA VAL ILE ALA TYR GLY THR CYS ALA THR PHE SEQRES 10 S 267 GLY GLY VAL GLN ALA ALA LYS PRO ASN PRO THR GLY ALA SEQRES 11 S 267 LYS GLY VAL ASN ASP ALA LEU LYS HIS LEU GLY VAL LYS SEQRES 12 S 267 ALA ILE ASN ILE ALA GLY CYS PRO PRO ASN PRO TYR ASN SEQRES 13 S 267 LEU VAL GLY THR ILE VAL TYR TYR LEU LYS ASN LYS ALA SEQRES 14 S 267 ALA PRO GLU LEU ASP SER LEU ASN ARG PRO THR MET PHE SEQRES 15 S 267 PHE GLY GLN THR VAL HIS GLU GLN CYS PRO ARG LEU PRO SEQRES 16 S 267 HIS PHE ASP ALA GLY GLU PHE ALA PRO SER PHE GLU SER SEQRES 17 S 267 GLU GLU ALA ARG LYS GLY TRP CYS LEU TYR GLU LEU GLY SEQRES 18 S 267 CYS LYS GLY PRO VAL THR MET ASN ASN CYS PRO LYS ILE SEQRES 19 S 267 LYS PHE ASN GLN THR ASN TRP PRO VAL ASP ALA GLY HIS SEQRES 20 S 267 PRO CYS ILE GLY CYS SER GLU PRO ASP PHE TRP ASP ALA SEQRES 21 S 267 MET THR PRO PHE TYR GLN ASN SEQRES 1 L 534 SER SER TYR SER GLY PRO ILE VAL VAL ASP PRO VAL THR SEQRES 2 L 534 ARG ILE GLU GLY HIS LEU ARG ILE GLU VAL GLU VAL GLU SEQRES 3 L 534 ASN GLY LYS VAL LYS ASN ALA TYR SER SER SER THR LEU SEQRES 4 L 534 PHE ARG GLY LEU GLU ILE ILE LEU LYS GLY ARG ASP PRO SEQRES 5 L 534 ARG ASP ALA GLN HIS PHE THR GLN ARG THR CYS GLY VAL SEQRES 6 L 534 CSO THR TYR THR HIS ALA LEU ALA SER THR ARG CYS VAL SEQRES 7 L 534 ASP ASN ALA VAL GLY VAL HIS ILE PRO LYS ASN ALA THR SEQRES 8 L 534 TYR ILE ARG ASN LEU VAL LEU GLY ALA GLN TYR LEU HIS SEQRES 9 L 534 ASP HIS ILE VAL HIS PHE TYR HIS LEU HIS ALA LEU ASP SEQRES 10 L 534 PHE VAL ASP VAL THR ALA ALA LEU LYS ALA ASP PRO ALA SEQRES 11 L 534 LYS ALA ALA LYS VAL ALA SER SER ILE SER PRO ARG LYS SEQRES 12 L 534 THR THR ALA ALA ASP LEU LYS ALA VAL GLN ASP LYS LEU SEQRES 13 L 534 LYS THR PHE VAL GLU THR GLY GLN LEU GLY PRO PHE THR SEQRES 14 L 534 ASN ALA TYR PHE LEU GLY GLY HIS PRO ALA TYR TYR LEU SEQRES 15 L 534 ASP PRO GLU THR ASN LEU ILE ALA THR ALA HIS TYR LEU SEQRES 16 L 534 GLU ALA LEU ARG LEU GLN VAL LYS ALA ALA ARG ALA MET SEQRES 17 L 534 ALA VAL PHE GLY ALA LYS ASN PRO HIS THR GLN PHE THR SEQRES 18 L 534 VAL VAL GLY GLY VAL THR CYS TYR ASP ALA LEU THR PRO SEQRES 19 L 534 GLN ARG ILE ALA GLU PHE GLU ALA LEU TRP LYS GLU THR SEQRES 20 L 534 LYS ALA PHE VAL ASP GLU VAL TYR ILE PRO ASP LEU LEU SEQRES 21 L 534 VAL VAL ALA ALA ALA TYR LYS ASP TRP THR GLN TYR GLY SEQRES 22 L 534 GLY THR ASP ASN PHE ILE THR PHE GLY GLU PHE PRO LYS SEQRES 23 L 534 ASP GLU TYR ASP LEU ASN SER ARG PHE PHE LYS PRO GLY SEQRES 24 L 534 VAL VAL PHE LYS ARG ASP PHE LYS ASN ILE LYS PRO PHE SEQRES 25 L 534 ASP LYS MET GLN ILE GLU GLU HIS VAL ARG HIS SER TRP SEQRES 26 L 534 TYR GLU GLY ALA GLU ALA ARG HIS PRO TRP LYS GLY GLN SEQRES 27 L 534 THR GLN PRO LYS TYR THR ASP LEU HIS GLY ASP ASP ARG SEQRES 28 L 534 TYR SER TRP MET LYS ALA PRO ARG TYR MET GLY GLU PRO SEQRES 29 L 534 MET GLU THR GLY PRO LEU ALA GLN VAL LEU ILE ALA TYR SEQRES 30 L 534 SER GLN GLY HIS PRO LYS VAL LYS ALA VAL THR ASP ALA SEQRES 31 L 534 VAL LEU ALA LYS LEU GLY VAL GLY PRO GLU ALA LEU PHE SEQRES 32 L 534 SER THR LEU GLY ARG THR ALA ALA ARG GLY ILE GLU THR SEQRES 33 L 534 ALA VAL ILE ALA GLU TYR VAL GLY VAL MET LEU GLN GLU SEQRES 34 L 534 TYR LYS ASP ASN ILE ALA LYS GLY ASP ASN VAL ILE CYS SEQRES 35 L 534 ALA PRO TRP GLU MET PRO LYS GLN ALA GLU GLY VAL GLY SEQRES 36 L 534 PHE VAL ASN ALA PRO ARG GLY GLY LEU SER HIS TRP ILE SEQRES 37 L 534 ARG ILE GLU ASP GLY LYS ILE GLY ASN PHE GLN LEU VAL SEQRES 38 L 534 VAL PRO SER THR TRP THR LEU GLY PRO ARG CYS ASP LYS SEQRES 39 L 534 ASN LYS LEU SER PRO VAL GLU ALA SER LEU ILE GLY THR SEQRES 40 L 534 PRO VAL ALA ASP ALA LYS ARG PRO VAL GLU ILE LEU ARG SEQRES 41 L 534 THR VAL HIS SER PHE ASP PRO CSO ILE ALA CYS GLY VAL SEQRES 42 L 534 HIS MODRES 1WUI CSO L 84 CYS S-HYDROXYCYSTEINE MODRES 1WUI CSO L 546 CYS S-HYDROXYCYSTEINE HET CSO L 84 7 HET CSO L 546 7 HET SF4 S1001 8 HET SF4 S1002 8 HET F3S S1003 7 HET MPD S2001 8 HET MPD S2004 8 HET MPD S2007 8 HET MG L1005 1 HET NFC L1004 10 HET MRD L2006 8 HETNAM CSO S-HYDROXYCYSTEINE HETNAM SF4 IRON/SULFUR CLUSTER HETNAM F3S FE3-S4 CLUSTER HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM MG MAGNESIUM ION HETNAM NFC NI-FE ACTIVE CENTER A-FORM HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL FORMUL 2 CSO 2(C3 H7 N O3 S) FORMUL 3 SF4 2(FE4 S4) FORMUL 5 F3S FE3 S4 FORMUL 6 MPD 3(C6 H14 O2) FORMUL 9 MG MG 2+ FORMUL 10 NFC C3 H2 FE N NI O4 FORMUL 11 MRD C6 H14 O2 FORMUL 12 HOH *995(H2 O) HELIX 1 1 THR S 18 ARG S 26 1 9 HELIX 2 2 TYR S 31 ASP S 38 1 8 HELIX 3 3 ALA S 52 ASN S 65 1 14 HELIX 4 4 ALA S 81 ILE S 85 5 5 HELIX 5 5 MET S 94 LEU S 102 1 9 HELIX 6 6 PRO S 103 ALA S 105 5 3 HELIX 7 7 GLY S 112 GLY S 118 1 7 HELIX 8 8 GLY S 119 ALA S 123 5 5 HELIX 9 9 GLY S 132 LYS S 138 1 7 HELIX 10 10 HIS S 139 GLY S 141 5 3 HELIX 11 11 ASN S 153 LYS S 168 1 16 HELIX 12 12 PRO S 179 GLY S 184 1 6 HELIX 13 13 VAL S 187 CYS S 191 5 5 HELIX 14 14 ARG S 193 ALA S 199 1 7 HELIX 15 15 SER S 208 LYS S 213 1 6 HELIX 16 16 LEU S 217 GLY S 221 5 5 HELIX 17 17 LYS S 223 THR S 227 5 5 HELIX 18 18 ASN S 230 LYS S 235 1 6 HELIX 19 19 PRO S 242 GLY S 246 5 5 HELIX 20 20 ASP S 256 MET S 261 1 6 HELIX 21 21 GLY L 60 LYS L 66 1 7 HELIX 22 22 ASP L 69 ARG L 71 5 3 HELIX 23 23 ASP L 72 ARG L 79 1 8 HELIX 24 24 TYR L 86 GLY L 101 1 16 HELIX 25 25 PRO L 105 LEU L 131 1 27 HELIX 26 26 HIS L 132 PHE L 136 5 5 HELIX 27 27 VAL L 139 ALA L 145 5 7 HELIX 28 28 ASP L 146 SER L 158 1 13 HELIX 29 29 THR L 163 THR L 180 1 18 HELIX 30 30 LEU L 183 THR L 187 5 5 HELIX 31 31 ASP L 201 ALA L 231 1 31 HELIX 32 32 CYS L 246 LEU L 250 5 5 HELIX 33 33 THR L 251 VAL L 272 1 22 HELIX 34 34 VAL L 272 TYR L 284 1 13 HELIX 35 35 LYS L 285 TYR L 290 5 6 HELIX 36 36 ASP L 308 ASN L 310 5 3 HELIX 37 37 ASP L 331 MET L 333 5 3 HELIX 38 38 HIS L 351 GLY L 355 5 5 HELIX 39 39 HIS L 365 ARG L 369 5 5 HELIX 40 40 GLY L 386 GLN L 397 1 12 HELIX 41 41 HIS L 399 GLY L 414 1 16 HELIX 42 42 GLY L 416 PHE L 421 5 6 HELIX 43 43 SER L 422 LYS L 454 1 33 HELIX 44 44 VAL L 500 GLY L 507 1 8 HELIX 45 45 SER L 516 ILE L 523 1 8 HELIX 46 46 PRO L 533 PHE L 543 1 11 HELIX 47 47 CSO L 546 HIS L 552 1 7 SHEET 1 A 5 SER S 41 TYR S 44 0 SHEET 2 A 5 SER S 8 HIS S 13 1 N VAL S 9 O SER S 41 SHEET 3 A 5 PHE S 70 GLU S 75 1 O GLU S 75 N LEU S 12 SHEET 4 A 5 ALA S 107 TYR S 111 1 O TYR S 111 N VAL S 74 SHEET 5 A 5 ILE S 145 ILE S 147 1 O ILE S 147 N ALA S 110 SHEET 1 B 2 ILE S 78 PRO S 79 0 SHEET 2 B 2 ALA S 130 LYS S 131 -1 O LYS S 131 N ILE S 78 SHEET 1 C 2 LYS S 88 VAL S 89 0 SHEET 2 C 2 HIS S 92 THR S 93 -1 O HIS S 92 N VAL S 89 SHEET 1 D 3 GLY L 23 VAL L 27 0 SHEET 2 D 3 LEU L 37 GLU L 44 -1 O VAL L 41 N ILE L 25 SHEET 3 D 3 LYS L 47 SER L 55 -1 O LYS L 49 N GLU L 42 SHEET 1 E 2 THR L 239 VAL L 240 0 SHEET 2 E 2 GLY L 243 VAL L 244 -1 O GLY L 243 N VAL L 240 SHEET 1 F 2 PHE L 296 PRO L 303 0 SHEET 2 F 2 ARG L 312 VAL L 319 -1 O VAL L 319 N PHE L 296 SHEET 1 G 2 ILE L 335 HIS L 338 0 SHEET 2 G 2 ALA L 375 TYR L 378 -1 O ARG L 377 N GLU L 336 SHEET 1 H 3 ALA L 469 ALA L 477 0 SHEET 2 H 3 GLY L 480 GLU L 489 -1 O LEU L 482 N VAL L 475 SHEET 3 H 3 LYS L 492 VAL L 499 -1 O VAL L 499 N SER L 483 LINK C VAL L 83 N CSO L 84 1555 1555 1.34 LINK C CSO L 84 N THR L 85 1555 1555 1.35 LINK C PRO L 545 N CSO L 546 1555 1555 1.35 LINK C CSO L 546 N ILE L 547 1555 1555 1.32 LINK SG CYS S 17 FE1 SF4 S1001 1555 1555 2.26 LINK SG CYS S 20 FE4 SF4 S1001 1555 1555 2.23 LINK SG CYS S 114 FE2 SF4 S1001 1555 1555 2.26 LINK SG CYS S 150 FE3 SF4 S1001 1555 1555 2.27 LINK ND1 HIS S 188 FE1 SF4 S1002 1555 1555 2.04 LINK SG CYS S 191 FE3 SF4 S1002 1555 1555 2.28 LINK SG CYS S 216 FE4 SF4 S1002 1555 1555 2.27 LINK SG CYS S 222 FE2 SF4 S1002 1555 1555 2.29 LINK SG CYS S 231 FE3 F3S S1003 1555 1555 2.30 LINK SG CYS S 249 FE1 F3S S1003 1555 1555 2.32 LINK SG CYS S 252 FE4 F3S S1003 1555 1555 2.30 LINK OE2 GLU L 62 MG MG L1005 1555 1555 2.15 LINK SG CYS L 81 NI NFC L1004 1555 1555 2.21 LINK OD CSO L 84 NI NFC L1004 1555 1555 1.77 LINK SG CSO L 84 FE NFC L1004 1555 1555 2.25 LINK SG CSO L 84 NI NFC L1004 1555 1555 2.53 LINK O LEU L 498 MG MG L1005 1555 1555 2.13 LINK SG CSO L 546 NI NFC L1004 1555 1555 2.12 LINK OD CSO L 546 NI NFC L1004 1555 1555 2.26 LINK SG CYS L 549 NI NFC L1004 1555 1555 2.48 LINK SG CYS L 549 FE NFC L1004 1555 1555 2.32 LINK NE2 HIS L 552 MG MG L1005 1555 1555 2.12 LINK MG MG L1005 O HOH L5001 1555 1555 2.05 LINK MG MG L1005 O HOH L5002 1555 1555 2.08 LINK MG MG L1005 O HOH L5003 1555 1555 2.11 CISPEP 1 GLU S 29 PRO S 30 0 9.57 CISPEP 2 LYS S 124 PRO S 125 0 6.70 CISPEP 3 CYS S 150 PRO S 151 0 -2.79 CISPEP 4 THR S 262 PRO S 263 0 -6.54 CISPEP 5 ASP L 28 PRO L 29 0 9.92 CISPEP 6 ASN L 233 PRO L 234 0 5.87 SITE 1 AC1 6 GLU L 62 LEU L 498 HIS L 552 HOH L5001 SITE 2 AC1 6 HOH L5002 HOH L5003 SITE 1 AC2 10 ARG L 79 HIS L 235 GLU S 16 CYS S 17 SITE 2 AC2 10 CYS S 20 THR S 113 CYS S 114 GLY S 149 SITE 3 AC2 10 CYS S 150 PRO S 151 SITE 1 AC3 7 HIS S 188 CYS S 191 ARG S 193 LEU S 194 SITE 2 AC3 7 CYS S 216 LEU S 217 CYS S 222 SITE 1 AC4 10 LYS L 232 GLN L 237 THR S 227 ASN S 229 SITE 2 AC4 10 CYS S 231 PHE S 236 TRP S 241 CYS S 249 SITE 3 AC4 10 ILE S 250 CYS S 252 SITE 1 AC5 13 CYS L 81 VAL L 83 CSO L 84 HIS L 88 SITE 2 AC5 13 ALA L 477 PRO L 478 ARG L 479 LEU L 482 SITE 3 AC5 13 VAL L 500 PRO L 501 SER L 502 CSO L 546 SITE 4 AC5 13 CYS L 549 SITE 1 AC6 5 TYR L 395 SER L 396 LEU L 410 PRO L 417 SITE 2 AC6 5 PHE L 421 SITE 1 AC7 7 PHE L 320 LYS L 321 MET L 379 LEU S 194 SITE 2 AC7 7 ASP S 198 HOH S5628 HOH S5694 SITE 1 AC8 5 HOH L5170 ASN S 134 ASN S 146 HOH S5185 SITE 2 AC8 5 HOH S5676 SITE 1 AC9 1 HIS S 68 CRYST1 98.069 125.966 66.380 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010197 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007939 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015065 0.00000