HEADER CELL ADHESION 09-DEC-04 1WUZ TITLE STRUCTURE OF EC1 DOMAIN OF CNR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PCDHA4 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-103; COMPND 5 SYNONYM: CNR-EC1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11 KEYWDS CADHERIN, CNR, HETERONUCLEAR NMR, PROTOCADHERIN, CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR H.MORISHITA,M.UMITSU,T.YAMAGUCHI,Y.MURATA,N.SHIBATA,K.UDAKA, AUTHOR 2 Y.HIGUCHI,H.AKUTSU,T.YAGI,T.IKEGAMI REVDAT 3 02-MAR-22 1WUZ 1 REMARK REVDAT 2 24-FEB-09 1WUZ 1 VERSN REVDAT 1 13-DEC-05 1WUZ 0 JRNL AUTH H.MORISHITA,M.UMITSU,T.YAMAGUCHI,Y.MURATA,N.SHIBATA,K.UDAKA, JRNL AUTH 2 Y.HIGUCHI,H.AKUTSU,T.YAGI,T.IKEGAMI JRNL TITL STRUCTURAL DIVERSITY OF THE FIRST CADHERIN DOMAINS REVEALED JRNL TITL 2 BY THE STRUCTURE OF CNR/PROTOCADHERIN ALPHA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2.2, CYANA 2.1 REMARK 3 AUTHORS : DELAGLIO, F. (NMRPIPE), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WUZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-DEC-04. REMARK 100 THE DEPOSITION ID IS D_1000024031. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 8.0 REMARK 210 IONIC STRENGTH : 50MM TRIS-HCL BUFFER REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.1MM CNR-EC1, 50MM TRIS-HCL REMARK 210 BUFFER AT PH8.0 CONTAINING 80MM REMARK 210 NACL, 1.5MM CACL2, 0.02%(W/V) REMARK 210 NAN3, 0.3MM PEFABLOC; 0.1MM CNR- REMARK 210 EC1, 50MM TRIS-HCL BUFFER AT REMARK 210 PH8.0 CONTAINING 80MM NACL, REMARK 210 1.5MM CACL2, 0.02%(W/V) NAN3, REMARK 210 0.3MM PEFABLOC REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 2D REMARK 210 TOCSY; 2D NOESY; 15N-1H-HSQC; 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.106, CYANA 2.1, TALOS REMARK 210 2003.027.13.05 REMARK 210 METHOD USED : SIMULATED ANNEALING TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 11 163.70 -48.06 REMARK 500 1 VAL A 19 -48.34 -130.81 REMARK 500 1 ARG A 21 99.95 -47.99 REMARK 500 1 ASP A 44 -78.93 -72.58 REMARK 500 1 SER A 62 -169.59 -160.92 REMARK 500 1 LEU A 69 -72.75 -48.68 REMARK 500 1 CYS A 70 -53.56 -162.23 REMARK 500 1 ARG A 72 -75.14 -50.54 REMARK 500 1 ARG A 86 85.62 68.55 REMARK 500 1 GLN A 89 -175.76 -173.64 REMARK 500 1 ASP A 99 -169.83 -179.79 REMARK 500 2 GLU A 11 161.56 -48.33 REMARK 500 2 VAL A 19 -45.05 -132.17 REMARK 500 2 ARG A 21 101.94 -48.38 REMARK 500 2 ASP A 44 -78.26 -106.92 REMARK 500 2 SER A 62 -169.50 -174.32 REMARK 500 2 LEU A 69 -72.07 -47.24 REMARK 500 2 CYS A 70 -53.53 -162.53 REMARK 500 2 ARG A 72 -74.34 -76.80 REMARK 500 2 ARG A 86 85.48 68.52 REMARK 500 2 ASP A 99 -172.71 -179.43 REMARK 500 3 GLU A 11 157.90 -48.52 REMARK 500 3 ARG A 21 102.37 -48.57 REMARK 500 3 ASP A 44 -76.95 -65.99 REMARK 500 3 ASN A 61 48.98 -148.52 REMARK 500 3 SER A 62 -170.19 -174.02 REMARK 500 3 LEU A 69 -71.96 -47.48 REMARK 500 3 CYS A 70 -53.97 -162.74 REMARK 500 3 ARG A 72 -74.67 -75.37 REMARK 500 3 ARG A 86 82.45 65.89 REMARK 500 3 GLN A 89 -174.07 -179.60 REMARK 500 3 ASP A 99 -170.75 -179.90 REMARK 500 4 ASN A 2 -46.21 -144.24 REMARK 500 4 GLU A 11 158.88 -49.12 REMARK 500 4 VAL A 19 -51.80 -129.01 REMARK 500 4 ARG A 21 102.84 -48.32 REMARK 500 4 ASP A 44 -75.53 -51.93 REMARK 500 4 ASN A 61 43.00 -144.40 REMARK 500 4 SER A 62 -169.88 -174.05 REMARK 500 4 LEU A 69 -72.79 -49.01 REMARK 500 4 CYS A 70 -53.27 -163.06 REMARK 500 4 ARG A 72 -74.72 -51.45 REMARK 500 4 SER A 73 109.41 -52.23 REMARK 500 4 ARG A 86 85.88 68.30 REMARK 500 4 ASP A 99 -169.64 179.59 REMARK 500 5 SER A 3 27.63 -143.91 REMARK 500 5 GLU A 11 159.24 -48.14 REMARK 500 5 ARG A 21 97.63 -48.46 REMARK 500 5 ASP A 44 -78.29 -61.63 REMARK 500 5 ASN A 55 17.76 -143.44 REMARK 500 REMARK 500 THIS ENTRY HAS 322 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1WUZ A 1 103 UNP Q6PAM9 Q6PAM9_MOUSE 27 129 SEQRES 1 A 103 GLY ASN SER GLN ILE HIS TYR SER ILE PRO GLU GLU ALA SEQRES 2 A 103 LYS HIS GLY THR PHE VAL GLY ARG ILE ALA GLN ASP LEU SEQRES 3 A 103 GLY LEU GLU LEU THR GLU LEU VAL PRO ARG LEU PHE ARG SEQRES 4 A 103 VAL ALA SER LYS ASP ARG GLY ASP LEU LEU GLU VAL ASN SEQRES 5 A 103 LEU GLN ASN GLY ILE LEU PHE VAL ASN SER ARG ILE ASP SEQRES 6 A 103 ARG GLU GLU LEU CYS GLY ARG SER ALA GLU CYS SER ILE SEQRES 7 A 103 HIS LEU GLU VAL ILE VAL ASP ARG PRO LEU GLN VAL PHE SEQRES 8 A 103 HIS VAL GLU VAL GLU VAL ARG ASP ILE ASN ASP ASN HELIX 1 1 ARG A 21 GLY A 27 1 7 HELIX 2 2 GLU A 29 VAL A 34 1 6 HELIX 3 3 ASP A 65 CYS A 70 1 6 SHEET 1 A 3 GLN A 4 PRO A 10 0 SHEET 2 A 3 GLN A 89 ARG A 98 1 O GLU A 94 N TYR A 7 SHEET 3 A 3 SER A 77 VAL A 84 -1 N LEU A 80 O VAL A 93 SHEET 1 B 2 LEU A 49 VAL A 51 0 SHEET 2 B 2 LEU A 58 VAL A 60 -1 O PHE A 59 N GLU A 50 SSBOND 1 CYS A 70 CYS A 76 1555 1555 2.11 CISPEP 1 ARG A 86 PRO A 87 1 0.01 CISPEP 2 ARG A 86 PRO A 87 2 -0.02 CISPEP 3 ARG A 86 PRO A 87 3 -0.01 CISPEP 4 ARG A 86 PRO A 87 4 -0.05 CISPEP 5 ARG A 86 PRO A 87 5 0.00 CISPEP 6 ARG A 86 PRO A 87 6 -0.01 CISPEP 7 ARG A 86 PRO A 87 7 0.01 CISPEP 8 ARG A 86 PRO A 87 8 -0.03 CISPEP 9 ARG A 86 PRO A 87 9 0.00 CISPEP 10 ARG A 86 PRO A 87 10 -0.01 CISPEP 11 ARG A 86 PRO A 87 11 -0.06 CISPEP 12 ARG A 86 PRO A 87 12 0.01 CISPEP 13 ARG A 86 PRO A 87 13 -0.03 CISPEP 14 ARG A 86 PRO A 87 14 0.02 CISPEP 15 ARG A 86 PRO A 87 15 -0.02 CISPEP 16 ARG A 86 PRO A 87 16 0.03 CISPEP 17 ARG A 86 PRO A 87 17 0.02 CISPEP 18 ARG A 86 PRO A 87 18 0.00 CISPEP 19 ARG A 86 PRO A 87 19 0.00 CISPEP 20 ARG A 86 PRO A 87 20 -0.01 CISPEP 21 ARG A 86 PRO A 87 21 -0.07 CISPEP 22 ARG A 86 PRO A 87 22 0.06 CISPEP 23 ARG A 86 PRO A 87 23 0.04 CISPEP 24 ARG A 86 PRO A 87 24 -0.04 CISPEP 25 ARG A 86 PRO A 87 25 0.06 CISPEP 26 ARG A 86 PRO A 87 26 0.04 CISPEP 27 ARG A 86 PRO A 87 27 -0.04 CISPEP 28 ARG A 86 PRO A 87 28 -0.04 CISPEP 29 ARG A 86 PRO A 87 29 0.08 CISPEP 30 ARG A 86 PRO A 87 30 0.01 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1