HEADER OXIDOREDUCTASE 11-DEC-04 1WV4 TITLE X-RAY STRUCTURE OF ESCHERICHIA COLI PYRIDOXINE 5'-PHOSPHATE OXIDASE IN TITLE 2 TETRAGONAL CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRIDOXAMINE 5'-PHOSPHATE OXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PNP/PMP OXIDASE, PNPOX; COMPND 5 EC: 1.4.3.5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS PLP, FMN, PYRIDOXAL, PYRIDOXINE 5'-PHOSPHATE, OXIDASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.K.SAFO,F.N.MUSAYEV,V.SCHIRCH REVDAT 5 25-OCT-23 1WV4 1 REMARK REVDAT 4 11-OCT-17 1WV4 1 REMARK REVDAT 3 24-FEB-09 1WV4 1 VERSN REVDAT 2 21-JUN-05 1WV4 1 JRNL AUTHOR REVDAT 1 28-DEC-04 1WV4 0 JRNL AUTH M.K.SAFO,F.N.MUSAYEV,V.SCHIRCH JRNL TITL STRUCTURE OF ESCHERICHIA COLI PYRIDOXINE 5'-PHOSPHATE JRNL TITL 2 OXIDASE IN A TETRAGONAL CRYSTAL FORM: INSIGHTS INTO THE JRNL TITL 3 MECHANISTIC PATHWAY OF THE ENZYME. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 61 599 2005 JRNL REFN ISSN 0907-4449 JRNL PMID 15858270 JRNL DOI 10.1107/S0907444905005512 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 107804.790 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 14120 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 709 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.011 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2198 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE : 0.3690 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 109 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.035 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2629 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 72 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.56000 REMARK 3 B22 (A**2) : -2.56000 REMARK 3 B33 (A**2) : 5.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : 0.26 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.46 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.40 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.022 REMARK 3 BOND ANGLES (DEGREES) : 2.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.260 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 39.08 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WV4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-DEC-04. REMARK 100 THE DEPOSITION ID IS D_1000024036. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-SEP-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MSC MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : BIOTEX REMARK 200 DATA SCALING SOFTWARE : BIOTEX REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14262 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 45.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.24900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1DNL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA HEPES, AMMONIUM PHOSPHATE, REMARK 280 POTASSIUM PHOSPHATE, MERCAPTOETHANOL, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.21000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.10500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 123.31500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 ASN A 4 REMARK 465 ASP A 5 REMARK 465 GLU A 6 REMARK 465 LEU A 7 REMARK 465 GLN A 8 REMARK 465 GLN A 9 REMARK 465 ILE A 10 REMARK 465 PHE A 130 REMARK 465 HIS A 131 REMARK 465 SER A 132 REMARK 465 ARG A 133 REMARK 465 PRO A 134 REMARK 465 ARG A 135 REMARK 465 ASP A 136 REMARK 465 SER A 137 REMARK 465 GLN A 138 REMARK 465 ILE A 139 REMARK 465 GLY A 140 REMARK 465 ALA A 141 REMARK 465 TRP A 142 REMARK 465 VAL A 143 REMARK 465 SER A 144 REMARK 465 LYS A 145 REMARK 465 GLN A 146 REMARK 465 SER A 147 REMARK 465 SER A 148 REMARK 465 ARG A 149 REMARK 465 ILE A 150 REMARK 465 SER A 151 REMARK 465 ALA A 152 REMARK 465 ARG A 153 REMARK 465 GLY A 154 REMARK 465 ILE A 155 REMARK 465 LEU A 156 REMARK 465 GLU A 157 REMARK 465 SER A 158 REMARK 465 LYS A 159 REMARK 465 PHE A 160 REMARK 465 LEU A 161 REMARK 465 GLU A 162 REMARK 465 LEU A 163 REMARK 465 LYS A 164 REMARK 465 GLN A 165 REMARK 465 LYS A 166 REMARK 465 PHE A 167 REMARK 465 GLN A 168 REMARK 465 GLN A 169 REMARK 465 GLY A 170 REMARK 465 GLU A 171 REMARK 465 VAL A 172 REMARK 465 PRO A 173 REMARK 465 LEU A 174 REMARK 465 PRO A 175 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASP B 3 REMARK 465 ASN B 4 REMARK 465 ASP B 5 REMARK 465 GLU B 6 REMARK 465 LEU B 7 REMARK 465 GLN B 8 REMARK 465 GLN B 9 REMARK 465 ILE B 10 REMARK 465 ALA B 11 REMARK 465 HIS B 12 REMARK 465 LEU B 13 REMARK 465 ARG B 14 REMARK 465 ARG B 15 REMARK 465 GLU B 16 REMARK 465 LYS B 128 REMARK 465 TYR B 129 REMARK 465 PHE B 130 REMARK 465 HIS B 131 REMARK 465 SER B 132 REMARK 465 ARG B 133 REMARK 465 PRO B 134 REMARK 465 ARG B 135 REMARK 465 ASP B 136 REMARK 465 SER B 137 REMARK 465 GLN B 138 REMARK 465 ILE B 139 REMARK 465 GLY B 140 REMARK 465 ALA B 141 REMARK 465 TRP B 142 REMARK 465 VAL B 143 REMARK 465 SER B 144 REMARK 465 LYS B 145 REMARK 465 GLN B 146 REMARK 465 SER B 147 REMARK 465 SER B 148 REMARK 465 ARG B 149 REMARK 465 ILE B 150 REMARK 465 SER B 151 REMARK 465 ALA B 152 REMARK 465 ARG B 153 REMARK 465 GLY B 154 REMARK 465 ILE B 155 REMARK 465 LEU B 156 REMARK 465 GLU B 157 REMARK 465 SER B 158 REMARK 465 LYS B 159 REMARK 465 PHE B 160 REMARK 465 LEU B 161 REMARK 465 GLU B 162 REMARK 465 LEU B 163 REMARK 465 LYS B 164 REMARK 465 GLN B 165 REMARK 465 LYS B 166 REMARK 465 PHE B 167 REMARK 465 GLN B 168 REMARK 465 GLN B 169 REMARK 465 GLY B 170 REMARK 465 GLU B 171 REMARK 465 VAL B 172 REMARK 465 PRO B 173 REMARK 465 LEU B 174 REMARK 465 PRO B 175 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR B 18 N - CA - C ANGL. DEV. = 22.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 15 -164.45 53.47 REMARK 500 ALA A 45 26.84 -74.41 REMARK 500 LYS A 46 53.98 36.46 REMARK 500 ASP A 49 62.02 38.55 REMARK 500 HIS A 73 146.50 179.98 REMARK 500 TRP A 105 35.89 -90.74 REMARK 500 VAL A 126 -24.75 -38.98 REMARK 500 LYS A 128 -61.87 179.06 REMARK 500 GLU A 195 -101.19 -45.27 REMARK 500 HIS A 196 62.88 -58.94 REMARK 500 ARG A 197 -4.47 56.66 REMARK 500 ASN A 208 70.30 34.29 REMARK 500 ASP A 209 62.42 37.61 REMARK 500 THR B 18 164.46 19.71 REMARK 500 LEU B 47 105.99 21.35 REMARK 500 ARG B 67 149.00 -170.51 REMARK 500 TRP B 105 37.54 -87.68 REMARK 500 PHE B 177 -5.55 67.82 REMARK 500 HIS B 196 -111.53 108.36 REMARK 500 ARG B 197 70.81 -175.72 REMARK 500 LEU B 198 68.24 -116.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 275 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 1275 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN B 1250 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DNL RELATED DB: PDB REMARK 900 STRUCTURE OF BINARY COMPLEX OF E. COLI PNPOX IN TRIGONAL CRYSTAL REMARK 900 FORM REMARK 900 RELATED ID: 1JNW RELATED DB: PDB REMARK 900 STRUCTURE OF TERNARY COMPLEX OF E. COLI PNPOX IN MONOCLINIC CRYSTAL REMARK 900 FORM REMARK 900 RELATED ID: 1G79 RELATED DB: PDB REMARK 900 STRUCTURE OF TERNARY COMPLEX OF E. COLI PNPOX IN TRIGONAL CRYSTAL REMARK 900 FORM DBREF 1WV4 A 1 218 UNP P28225 PDXH_ECOLI 0 217 DBREF 1WV4 B 1 218 UNP P28225 PDXH_ECOLI 0 217 SEQRES 1 A 218 MET SER ASP ASN ASP GLU LEU GLN GLN ILE ALA HIS LEU SEQRES 2 A 218 ARG ARG GLU TYR THR LYS GLY GLY LEU ARG ARG ARG ASP SEQRES 3 A 218 LEU PRO ALA ASP PRO LEU THR LEU PHE GLU ARG TRP LEU SEQRES 4 A 218 SER GLN ALA CYS GLU ALA LYS LEU ALA ASP PRO THR ALA SEQRES 5 A 218 MET VAL VAL ALA THR VAL ASP GLU HIS GLY GLN PRO TYR SEQRES 6 A 218 GLN ARG ILE VAL LEU LEU LYS HIS TYR ASP GLU LYS GLY SEQRES 7 A 218 MET VAL PHE TYR THR ASN LEU GLY SER ARG LYS ALA HIS SEQRES 8 A 218 GLN ILE GLU ASN ASN PRO ARG VAL SER LEU LEU PHE PRO SEQRES 9 A 218 TRP HIS THR LEU GLU ARG GLN VAL MET VAL ILE GLY LYS SEQRES 10 A 218 ALA GLU ARG LEU SER THR LEU GLU VAL MET LYS TYR PHE SEQRES 11 A 218 HIS SER ARG PRO ARG ASP SER GLN ILE GLY ALA TRP VAL SEQRES 12 A 218 SER LYS GLN SER SER ARG ILE SER ALA ARG GLY ILE LEU SEQRES 13 A 218 GLU SER LYS PHE LEU GLU LEU LYS GLN LYS PHE GLN GLN SEQRES 14 A 218 GLY GLU VAL PRO LEU PRO SER PHE TRP GLY GLY PHE ARG SEQRES 15 A 218 VAL SER LEU GLU GLN ILE GLU PHE TRP GLN GLY GLY GLU SEQRES 16 A 218 HIS ARG LEU HIS ASP ARG PHE LEU TYR GLN ARG GLU ASN SEQRES 17 A 218 ASP ALA TRP LYS ILE ASP ARG LEU ALA PRO SEQRES 1 B 218 MET SER ASP ASN ASP GLU LEU GLN GLN ILE ALA HIS LEU SEQRES 2 B 218 ARG ARG GLU TYR THR LYS GLY GLY LEU ARG ARG ARG ASP SEQRES 3 B 218 LEU PRO ALA ASP PRO LEU THR LEU PHE GLU ARG TRP LEU SEQRES 4 B 218 SER GLN ALA CYS GLU ALA LYS LEU ALA ASP PRO THR ALA SEQRES 5 B 218 MET VAL VAL ALA THR VAL ASP GLU HIS GLY GLN PRO TYR SEQRES 6 B 218 GLN ARG ILE VAL LEU LEU LYS HIS TYR ASP GLU LYS GLY SEQRES 7 B 218 MET VAL PHE TYR THR ASN LEU GLY SER ARG LYS ALA HIS SEQRES 8 B 218 GLN ILE GLU ASN ASN PRO ARG VAL SER LEU LEU PHE PRO SEQRES 9 B 218 TRP HIS THR LEU GLU ARG GLN VAL MET VAL ILE GLY LYS SEQRES 10 B 218 ALA GLU ARG LEU SER THR LEU GLU VAL MET LYS TYR PHE SEQRES 11 B 218 HIS SER ARG PRO ARG ASP SER GLN ILE GLY ALA TRP VAL SEQRES 12 B 218 SER LYS GLN SER SER ARG ILE SER ALA ARG GLY ILE LEU SEQRES 13 B 218 GLU SER LYS PHE LEU GLU LEU LYS GLN LYS PHE GLN GLN SEQRES 14 B 218 GLY GLU VAL PRO LEU PRO SER PHE TRP GLY GLY PHE ARG SEQRES 15 B 218 VAL SER LEU GLU GLN ILE GLU PHE TRP GLN GLY GLY GLU SEQRES 16 B 218 HIS ARG LEU HIS ASP ARG PHE LEU TYR GLN ARG GLU ASN SEQRES 17 B 218 ASP ALA TRP LYS ILE ASP ARG LEU ALA PRO HET PO4 A 275 5 HET FMN A 250 31 HET PO4 B1275 5 HET FMN B1250 31 HETNAM PO4 PHOSPHATE ION HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 FMN 2(C17 H21 N4 O9 P) FORMUL 7 HOH *72(H2 O) HELIX 1 1 ASP A 30 ALA A 45 1 16 HELIX 2 2 SER A 87 ASN A 96 1 10 HELIX 3 3 HIS A 106 GLU A 109 5 4 HELIX 4 4 SER A 122 MET A 127 1 6 HELIX 5 5 ARG B 23 LEU B 27 5 5 HELIX 6 6 ASP B 30 ALA B 45 1 16 HELIX 7 7 SER B 87 ASN B 96 1 10 HELIX 8 8 TRP B 105 LEU B 108 5 4 SHEET 1 A 7 PRO A 64 LEU A 70 0 SHEET 2 A 7 ALA A 52 VAL A 58 -1 N MET A 53 O VAL A 69 SHEET 3 A 7 ARG A 98 TRP A 105 -1 O LEU A 102 N VAL A 54 SHEET 4 A 7 ARG A 110 ARG A 120 -1 N ARG A 110 O TRP A 105 SHEET 5 A 7 TRP A 178 VAL A 183 -1 O ARG A 182 N GLU A 119 SHEET 6 A 7 GLY A 78 ASN A 84 -1 N MET A 79 O VAL A 183 SHEET 7 A 7 HIS A 73 ASP A 75 -1 N HIS A 73 O VAL A 80 SHEET 1 B 7 PRO A 64 LEU A 70 0 SHEET 2 B 7 ALA A 52 VAL A 58 -1 N MET A 53 O VAL A 69 SHEET 3 B 7 ARG A 98 TRP A 105 -1 O LEU A 102 N VAL A 54 SHEET 4 B 7 ARG A 110 ARG A 120 -1 N ARG A 110 O TRP A 105 SHEET 5 B 7 GLN A 187 GLN A 192 -1 O GLU A 189 N MET A 113 SHEET 6 B 7 ASP A 200 ARG A 206 -1 O PHE A 202 N PHE A 190 SHEET 7 B 7 TRP A 211 LEU A 216 -1 O LYS A 212 N GLN A 205 SHEET 1 C 7 PRO B 64 LEU B 70 0 SHEET 2 C 7 ALA B 52 VAL B 58 -1 N VAL B 55 O ARG B 67 SHEET 3 C 7 ARG B 98 PHE B 103 -1 O SER B 100 N ALA B 56 SHEET 4 C 7 ARG B 110 ARG B 120 -1 O VAL B 114 N LEU B 101 SHEET 5 C 7 TRP B 178 VAL B 183 -1 O ARG B 182 N GLU B 119 SHEET 6 C 7 GLY B 78 ASN B 84 -1 N MET B 79 O VAL B 183 SHEET 7 C 7 HIS B 73 ASP B 75 -1 N ASP B 75 O GLY B 78 SHEET 1 D 7 PRO B 64 LEU B 70 0 SHEET 2 D 7 ALA B 52 VAL B 58 -1 N VAL B 55 O ARG B 67 SHEET 3 D 7 ARG B 98 PHE B 103 -1 O SER B 100 N ALA B 56 SHEET 4 D 7 ARG B 110 ARG B 120 -1 O VAL B 114 N LEU B 101 SHEET 5 D 7 GLN B 187 GLN B 192 -1 O GLU B 189 N MET B 113 SHEET 6 D 7 ASP B 200 GLU B 207 -1 O TYR B 204 N ILE B 188 SHEET 7 D 7 ALA B 210 ARG B 215 -1 O ALA B 210 N GLU B 207 SITE 1 AC1 3 ARG A 24 ARG A 215 HOH A 317 SITE 1 AC2 4 ARG B 23 ARG B 24 ARG B 25 ARG B 215 SITE 1 AC3 15 ASP A 49 ARG A 67 ILE A 68 LEU A 70 SITE 2 AC3 15 LYS A 72 TYR A 82 THR A 83 SER A 87 SITE 3 AC3 15 ARG A 88 LYS A 89 HOH A 291 HIS B 106 SITE 4 AC3 15 GLN B 111 TRP B 191 ARG B 201 SITE 1 AC4 14 GLN A 111 TRP A 191 ARG A 201 ASP B 49 SITE 2 AC4 14 ARG B 67 ILE B 68 VAL B 69 LEU B 70 SITE 3 AC4 14 TYR B 82 THR B 83 SER B 87 ARG B 88 SITE 4 AC4 14 LYS B 89 HOH B1282 CRYST1 54.420 54.420 164.420 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018376 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018376 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006082 0.00000