data_1WV5 # _entry.id 1WV5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1WV5 pdb_00001wv5 10.2210/pdb1wv5/pdb NDB AD0035 ? ? RCSB RCSB024037 ? ? WWPDB D_1000024037 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-06-28 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.value' 6 4 'Structure model' '_struct_conn.pdbx_dist_value' 7 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 8 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 9 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 10 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 11 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1WV5 _pdbx_database_status.recvd_initial_deposition_date 2004-12-11 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1WV6 _pdbx_database_related.details 'the same DNA, Sr-form' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Egli, M.' 1 'Minasov, G.' 2 'Tereshko, V.' 3 'Pallan, P.S.' 4 'Teplova, M.' 5 'Inamati, G.B.' 6 'Lesnik, E.A.' 7 'Owens, S.R.' 8 'Ross, B.S.' 9 'Prakash, T.P.' 10 'Manoharam, M.' 11 # _citation.id primary _citation.title ;Probing the influence of stereoelectronic effects on the biophysical properties of oligonucleotides: comprehensive analysis of the RNA affinity, nuclease resistance, and crystal structure of ten 2'-O-ribonucleic acid modifications. ; _citation.journal_abbrev Biochemistry _citation.journal_volume 44 _citation.page_first 9045 _citation.page_last 9057 _citation.year 2005 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15966728 _citation.pdbx_database_id_DOI 10.1021/bi050574m # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Egli, M.' 1 ? primary 'Minasov, G.' 2 ? primary 'Tereshko, V.' 3 ? primary 'Pallan, P.S.' 4 ? primary 'Teplova, M.' 5 ? primary 'Inamati, G.B.' 6 ? primary 'Lesnik, E.A.' 7 ? primary 'Owens, S.R.' 8 ? primary 'Ross, B.S.' 9 ? primary 'Prakash, T.P.' 10 ? primary 'Manoharan, M.' 11 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*CP*GP*TP*AP*(2BT)P*AP*CP*GP*C)-3'" 3117.111 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 water nat water 18.015 31 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(DC)(DG)(DT)(DA)(2BT)(DA)(DC)(DG)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GCGTATACGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DG n 1 4 DT n 1 5 DA n 1 6 2BT n 1 7 DA n 1 8 DC n 1 9 DG n 1 10 DC n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2BT 'RNA linking' n "2'-O-BUTYL-THYMIDINE" "2'-O-BUTYL-5-METHYLURIDINE" 'C14 H23 N2 O9 P' 394.314 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 2BT 6 6 6 2BT BTL A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DC 8 8 8 DC C A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DC 10 10 10 DC C A . n B 1 1 DG 1 11 11 DG G B . n B 1 2 DC 2 12 12 DC C B . n B 1 3 DG 3 13 13 DG G B . n B 1 4 DT 4 14 14 DT T B . n B 1 5 DA 5 15 15 DA A B . n B 1 6 2BT 6 16 16 2BT BTL B . n B 1 7 DA 7 17 17 DA A B . n B 1 8 DC 8 18 18 DC C B . n B 1 9 DG 9 19 19 DG G B . n B 1 10 DC 10 20 20 DC C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 101 101 MG MG A . D 3 HOH 1 102 102 HOH HOH A . D 3 HOH 2 103 103 HOH HOH A . D 3 HOH 3 105 105 HOH HOH A . D 3 HOH 4 107 107 HOH HOH A . D 3 HOH 5 202 202 HOH HOH A . D 3 HOH 6 204 204 HOH HOH A . D 3 HOH 7 205 205 HOH HOH A . D 3 HOH 8 206 206 HOH HOH A . D 3 HOH 9 207 207 HOH HOH A . D 3 HOH 10 208 208 HOH HOH A . D 3 HOH 11 211 211 HOH HOH A . D 3 HOH 12 213 213 HOH HOH A . D 3 HOH 13 215 215 HOH HOH A . D 3 HOH 14 218 218 HOH HOH A . D 3 HOH 15 219 219 HOH HOH A . D 3 HOH 16 222 222 HOH HOH A . D 3 HOH 17 223 223 HOH HOH A . D 3 HOH 18 224 224 HOH HOH A . D 3 HOH 19 227 227 HOH HOH A . E 3 HOH 1 104 104 HOH HOH B . E 3 HOH 2 106 106 HOH HOH B . E 3 HOH 3 209 209 HOH HOH B . E 3 HOH 4 210 210 HOH HOH B . E 3 HOH 5 212 212 HOH HOH B . E 3 HOH 6 214 214 HOH HOH B . E 3 HOH 7 216 216 HOH HOH B . E 3 HOH 8 217 217 HOH HOH B . E 3 HOH 9 220 220 HOH HOH B . E 3 HOH 10 221 221 HOH HOH B . E 3 HOH 11 225 225 HOH HOH B . E 3 HOH 12 226 226 HOH HOH B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A 2BT 6 ? "CD'" ? A 2BT 6 "CD'" 2 1 Y 1 B 2BT 16 ? "CD'" ? B 2BT 6 "CD'" # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.9999 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 AMoRE phasing . ? 4 # _cell.entry_id 1WV5 _cell.length_a 44.435 _cell.length_b 44.434 _cell.length_c 69.533 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WV5 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1WV5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.75 _exptl_crystal.density_percent_sol 55.32 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.3 _exptl_crystal_grow.pdbx_details 'MGC2, PEG400, pH 6.3, VAPOR DIFFUSION, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MGC2 ? ? ? 1 2 1 PEG400 ? ? ? 1 3 2 MGC2 ? ? ? 1 4 2 PEG400 ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2000-12-24 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 17-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 17-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1WV5 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 2.3 _reflns.d_resolution_low 20 _reflns.number_all 3237 _reflns.number_obs 3237 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs 0.075 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 1WV5 _refine.ls_number_reflns_obs 3223 _refine.ls_number_reflns_all 3223 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 99.56 _refine.ls_R_factor_obs 0.23788 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23674 _refine.ls_R_factor_R_free 0.26025 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.3 _refine.ls_number_reflns_R_free 144 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.945 _refine.correlation_coeff_Fo_to_Fc_free 0.950 _refine.B_iso_mean 52.184 _refine.aniso_B[1][1] 2.29 _refine.aniso_B[2][2] 2.29 _refine.aniso_B[3][3] -4.59 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.307 _refine.pdbx_overall_ESU_R_Free 0.226 _refine.overall_SU_ML 0.187 _refine.overall_SU_B 17.196 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 412 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 31 _refine_hist.number_atoms_total 444 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.021 ? 460 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 190 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.817 2.102 ? 708 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.355 2.004 ? 482 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.092 0.200 ? 80 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.020 ? 206 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.122 0.200 ? 43 'X-RAY DIFFRACTION' ? r_nbd_other 0.244 0.200 ? 212 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other 0.090 0.200 ? 108 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.189 0.200 ? 22 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.136 0.200 ? 7 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.091 0.200 ? 14 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.233 0.200 ? 1 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.403 3.000 ? 655 'X-RAY DIFFRACTION' ? r_scangle_it 1.977 4.500 ? 704 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.d_res_high 2.303 _refine_ls_shell.d_res_low 2.426 _refine_ls_shell.number_reflns_R_work 439 _refine_ls_shell.R_factor_R_work 0.368 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.414 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 23 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1WV5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1WV5 _struct.title ;X-ray structure of the A-decamer GCGTATACGC with a single 2'-o-butyl thymine in place of T6, Mg-form ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1WV5 _struct_keywords.pdbx_keywords DNA _struct_keywords.text DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1WV5 _struct_ref.pdbx_db_accession 1WV5 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1WV5 A 1 ? 10 ? 1WV5 1 ? 10 ? 1 10 2 1 1WV5 B 1 ? 10 ? 1WV5 11 ? 20 ? 11 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DA 5 "O3'" ? ? ? 1_555 A 2BT 6 P ? ? A DA 5 A 2BT 6 1_555 ? ? ? ? ? ? ? 1.591 ? ? covale2 covale both ? A 2BT 6 "O3'" ? ? ? 1_555 A DA 7 P ? ? A 2BT 6 A DA 7 1_555 ? ? ? ? ? ? ? 1.577 ? ? covale3 covale both ? B DA 5 "O3'" ? ? ? 1_555 B 2BT 6 P ? ? B DA 15 B 2BT 16 1_555 ? ? ? ? ? ? ? 1.597 ? ? covale4 covale both ? B 2BT 6 "O3'" ? ? ? 1_555 B DA 7 P ? ? B 2BT 16 B DA 17 1_555 ? ? ? ? ? ? ? 1.575 ? ? metalc1 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 101 A HOH 102 1_555 ? ? ? ? ? ? ? 2.125 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 101 A HOH 103 1_555 ? ? ? ? ? ? ? 2.023 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 101 A HOH 105 1_555 ? ? ? ? ? ? ? 2.299 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 1 B DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 3 B DC 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 4 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 4 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B 2BT 6 N3 ? ? A DA 5 B 2BT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B 2BT 6 O4 ? ? A DA 5 B 2BT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A 2BT 6 N3 ? ? ? 1_555 B DA 5 N1 ? ? A 2BT 6 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A 2BT 6 O4 ? ? ? 1_555 B DA 5 N6 ? ? A 2BT 6 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 7 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 7 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 8 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 10 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 10 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 10 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? D HOH . ? A HOH 102 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? D HOH . ? A HOH 103 ? 1_555 95.2 ? 2 O ? D HOH . ? A HOH 102 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? D HOH . ? A HOH 105 ? 1_555 71.3 ? 3 O ? D HOH . ? A HOH 103 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? D HOH . ? A HOH 105 ? 1_555 76.3 ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id MG _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE MG A 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 HOH D . ? HOH A 102 . ? 1_555 ? 2 AC1 5 HOH D . ? HOH A 103 . ? 1_555 ? 3 AC1 5 HOH D . ? HOH A 105 . ? 1_555 ? 4 AC1 5 HOH E . ? HOH B 106 . ? 1_555 ? 5 AC1 5 HOH E . ? HOH B 225 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DG 3 ? ? "C3'" A DG 3 ? ? 1.377 1.419 -0.042 0.006 N 2 1 "O3'" A DT 4 ? ? "C3'" A DT 4 ? ? 1.371 1.419 -0.048 0.006 N 3 1 "O3'" B DA 17 ? ? "C3'" B DA 17 ? ? 1.365 1.419 -0.054 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.18 108.30 2.88 0.30 N 2 1 "O4'" A DT 4 ? ? "C4'" A DT 4 ? ? "C3'" A DT 4 ? ? 102.07 104.50 -2.43 0.40 N 3 1 N3 A DT 4 ? ? C4 A DT 4 ? ? O4 A DT 4 ? ? 123.54 119.90 3.64 0.60 N 4 1 C5 A DT 4 ? ? C4 A DT 4 ? ? O4 A DT 4 ? ? 119.94 124.90 -4.96 0.70 N 5 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 112.78 108.30 4.48 0.30 N 6 1 "C3'" A 2BT 6 ? ? "O3'" A 2BT 6 ? ? P A DA 7 ? ? 128.36 119.70 8.66 1.20 Y 7 1 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 110.65 108.30 2.35 0.30 N 8 1 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 111.85 108.30 3.55 0.30 N 9 1 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 111.49 108.30 3.19 0.30 N 10 1 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? N1 B DC 12 ? ? 110.95 108.30 2.65 0.30 N 11 1 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? N1 B DT 14 ? ? 110.36 108.30 2.06 0.30 N 12 1 "O4'" B DA 15 ? ? "C4'" B DA 15 ? ? "C3'" B DA 15 ? ? 102.08 104.50 -2.42 0.40 N 13 1 "O4'" B DC 18 ? ? "C4'" B DC 18 ? ? "C3'" B DC 18 ? ? 100.22 104.50 -4.28 0.40 N 14 1 "C4'" B DC 18 ? ? "C3'" B DC 18 ? ? "C2'" B DC 18 ? ? 97.53 102.20 -4.67 0.70 N 15 1 "O4'" B DG 19 ? ? "C4'" B DG 19 ? ? "C3'" B DG 19 ? ? 101.42 104.50 -3.08 0.40 N 16 1 "O4'" B DC 20 ? ? "C1'" B DC 20 ? ? N1 B DC 20 ? ? 111.96 108.30 3.66 0.30 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 2BT 6 A 2BT 6 ? DT "2'-O-BUTYL-THYMIDINE" 2 B 2BT 6 B 2BT 16 ? DT "2'-O-BUTYL-THYMIDINE" # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 4.1771 _pdbx_refine_tls.origin_y 34.9521 _pdbx_refine_tls.origin_z 3.2698 _pdbx_refine_tls.T[1][1] -0.2289 _pdbx_refine_tls.T[2][2] -0.2542 _pdbx_refine_tls.T[3][3] -0.1729 _pdbx_refine_tls.T[1][2] 0.0251 _pdbx_refine_tls.T[1][3] -0.0337 _pdbx_refine_tls.T[2][3] -0.1043 _pdbx_refine_tls.L[1][1] 3.5631 _pdbx_refine_tls.L[2][2] 4.2126 _pdbx_refine_tls.L[3][3] 4.6102 _pdbx_refine_tls.L[1][2] -0.2106 _pdbx_refine_tls.L[1][3] -0.9998 _pdbx_refine_tls.L[2][3] -0.9002 _pdbx_refine_tls.S[1][1] 0.2838 _pdbx_refine_tls.S[1][2] 0.0029 _pdbx_refine_tls.S[1][3] 0.0622 _pdbx_refine_tls.S[2][1] -0.0456 _pdbx_refine_tls.S[2][2] -0.2138 _pdbx_refine_tls.S[2][3] -0.5809 _pdbx_refine_tls.S[3][1] 0.2729 _pdbx_refine_tls.S[3][2] 0.2876 _pdbx_refine_tls.S[3][3] -0.0700 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 1 A 1 A 10 A 10 ? 'X-RAY DIFFRACTION' ? 2 1 B 11 B 1 B 20 B 10 ? 'X-RAY DIFFRACTION' ? 3 1 A 101 C ? A 227 D ? ? 'X-RAY DIFFRACTION' ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2BT P P N N 1 2BT OP3 O N N 2 2BT OP2 O N N 3 2BT "O5'" O N N 4 2BT "C5'" C N N 5 2BT "C4'" C N R 6 2BT "O4'" O N N 7 2BT "C1'" C N R 8 2BT N1 N N N 9 2BT C2 C N N 10 2BT O2 O N N 11 2BT N3 N N N 12 2BT C4 C N N 13 2BT O4 O N N 14 2BT C5 C N N 15 2BT C5M C N N 16 2BT C6 C N N 17 2BT "C2'" C N R 18 2BT "O2'" O N N 19 2BT "CA'" C N N 20 2BT "CB'" C N N 21 2BT "CC'" C N N 22 2BT "C3'" C N R 23 2BT "O3'" O N N 24 2BT "CD'" C N N 25 2BT OP1 O N N 26 2BT HOP3 H N N 27 2BT HOP2 H N N 28 2BT "H5'" H N N 29 2BT "H5''" H N N 30 2BT "H4'" H N N 31 2BT "H1'" H N N 32 2BT HN3 H N N 33 2BT H71 H N N 34 2BT H72 H N N 35 2BT H73 H N N 36 2BT H6 H N N 37 2BT "H2'" H N N 38 2BT "HA'1" H N N 39 2BT "HA'2" H N N 40 2BT "HB'1" H N N 41 2BT "HB'2" H N N 42 2BT "HC'1" H N N 43 2BT "HC'2" H N N 44 2BT "H3'" H N N 45 2BT "HO3'" H N N 46 2BT "HD'1" H N N 47 2BT "HD'2" H N N 48 2BT "HD'3" H N N 49 DA OP3 O N N 50 DA P P N N 51 DA OP1 O N N 52 DA OP2 O N N 53 DA "O5'" O N N 54 DA "C5'" C N N 55 DA "C4'" C N R 56 DA "O4'" O N N 57 DA "C3'" C N S 58 DA "O3'" O N N 59 DA "C2'" C N N 60 DA "C1'" C N R 61 DA N9 N Y N 62 DA C8 C Y N 63 DA N7 N Y N 64 DA C5 C Y N 65 DA C6 C Y N 66 DA N6 N N N 67 DA N1 N Y N 68 DA C2 C Y N 69 DA N3 N Y N 70 DA C4 C Y N 71 DA HOP3 H N N 72 DA HOP2 H N N 73 DA "H5'" H N N 74 DA "H5''" H N N 75 DA "H4'" H N N 76 DA "H3'" H N N 77 DA "HO3'" H N N 78 DA "H2'" H N N 79 DA "H2''" H N N 80 DA "H1'" H N N 81 DA H8 H N N 82 DA H61 H N N 83 DA H62 H N N 84 DA H2 H N N 85 DC OP3 O N N 86 DC P P N N 87 DC OP1 O N N 88 DC OP2 O N N 89 DC "O5'" O N N 90 DC "C5'" C N N 91 DC "C4'" C N R 92 DC "O4'" O N N 93 DC "C3'" C N S 94 DC "O3'" O N N 95 DC "C2'" C N N 96 DC "C1'" C N R 97 DC N1 N N N 98 DC C2 C N N 99 DC O2 O N N 100 DC N3 N N N 101 DC C4 C N N 102 DC N4 N N N 103 DC C5 C N N 104 DC C6 C N N 105 DC HOP3 H N N 106 DC HOP2 H N N 107 DC "H5'" H N N 108 DC "H5''" H N N 109 DC "H4'" H N N 110 DC "H3'" H N N 111 DC "HO3'" H N N 112 DC "H2'" H N N 113 DC "H2''" H N N 114 DC "H1'" H N N 115 DC H41 H N N 116 DC H42 H N N 117 DC H5 H N N 118 DC H6 H N N 119 DG OP3 O N N 120 DG P P N N 121 DG OP1 O N N 122 DG OP2 O N N 123 DG "O5'" O N N 124 DG "C5'" C N N 125 DG "C4'" C N R 126 DG "O4'" O N N 127 DG "C3'" C N S 128 DG "O3'" O N N 129 DG "C2'" C N N 130 DG "C1'" C N R 131 DG N9 N Y N 132 DG C8 C Y N 133 DG N7 N Y N 134 DG C5 C Y N 135 DG C6 C N N 136 DG O6 O N N 137 DG N1 N N N 138 DG C2 C N N 139 DG N2 N N N 140 DG N3 N N N 141 DG C4 C Y N 142 DG HOP3 H N N 143 DG HOP2 H N N 144 DG "H5'" H N N 145 DG "H5''" H N N 146 DG "H4'" H N N 147 DG "H3'" H N N 148 DG "HO3'" H N N 149 DG "H2'" H N N 150 DG "H2''" H N N 151 DG "H1'" H N N 152 DG H8 H N N 153 DG H1 H N N 154 DG H21 H N N 155 DG H22 H N N 156 DT OP3 O N N 157 DT P P N N 158 DT OP1 O N N 159 DT OP2 O N N 160 DT "O5'" O N N 161 DT "C5'" C N N 162 DT "C4'" C N R 163 DT "O4'" O N N 164 DT "C3'" C N S 165 DT "O3'" O N N 166 DT "C2'" C N N 167 DT "C1'" C N R 168 DT N1 N N N 169 DT C2 C N N 170 DT O2 O N N 171 DT N3 N N N 172 DT C4 C N N 173 DT O4 O N N 174 DT C5 C N N 175 DT C7 C N N 176 DT C6 C N N 177 DT HOP3 H N N 178 DT HOP2 H N N 179 DT "H5'" H N N 180 DT "H5''" H N N 181 DT "H4'" H N N 182 DT "H3'" H N N 183 DT "HO3'" H N N 184 DT "H2'" H N N 185 DT "H2''" H N N 186 DT "H1'" H N N 187 DT H3 H N N 188 DT H71 H N N 189 DT H72 H N N 190 DT H73 H N N 191 DT H6 H N N 192 HOH O O N N 193 HOH H1 H N N 194 HOH H2 H N N 195 MG MG MG N N 196 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2BT P OP3 sing N N 1 2BT P OP2 sing N N 2 2BT P "O5'" sing N N 3 2BT P OP1 doub N N 4 2BT OP3 HOP3 sing N N 5 2BT OP2 HOP2 sing N N 6 2BT "O5'" "C5'" sing N N 7 2BT "C5'" "C4'" sing N N 8 2BT "C5'" "H5'" sing N N 9 2BT "C5'" "H5''" sing N N 10 2BT "C4'" "O4'" sing N N 11 2BT "C4'" "C3'" sing N N 12 2BT "C4'" "H4'" sing N N 13 2BT "O4'" "C1'" sing N N 14 2BT "C1'" N1 sing N N 15 2BT "C1'" "C2'" sing N N 16 2BT "C1'" "H1'" sing N N 17 2BT N1 C2 sing N N 18 2BT N1 C6 sing N N 19 2BT C2 O2 doub N N 20 2BT C2 N3 sing N N 21 2BT N3 C4 sing N N 22 2BT N3 HN3 sing N N 23 2BT C4 O4 doub N N 24 2BT C4 C5 sing N N 25 2BT C5 C5M sing N N 26 2BT C5 C6 doub N N 27 2BT C5M H71 sing N N 28 2BT C5M H72 sing N N 29 2BT C5M H73 sing N N 30 2BT C6 H6 sing N N 31 2BT "C2'" "O2'" sing N N 32 2BT "C2'" "C3'" sing N N 33 2BT "C2'" "H2'" sing N N 34 2BT "O2'" "CA'" sing N N 35 2BT "CA'" "CB'" sing N N 36 2BT "CA'" "HA'1" sing N N 37 2BT "CA'" "HA'2" sing N N 38 2BT "CB'" "CC'" sing N N 39 2BT "CB'" "HB'1" sing N N 40 2BT "CB'" "HB'2" sing N N 41 2BT "CC'" "CD'" sing N N 42 2BT "CC'" "HC'1" sing N N 43 2BT "CC'" "HC'2" sing N N 44 2BT "C3'" "O3'" sing N N 45 2BT "C3'" "H3'" sing N N 46 2BT "O3'" "HO3'" sing N N 47 2BT "CD'" "HD'1" sing N N 48 2BT "CD'" "HD'2" sing N N 49 2BT "CD'" "HD'3" sing N N 50 DA OP3 P sing N N 51 DA OP3 HOP3 sing N N 52 DA P OP1 doub N N 53 DA P OP2 sing N N 54 DA P "O5'" sing N N 55 DA OP2 HOP2 sing N N 56 DA "O5'" "C5'" sing N N 57 DA "C5'" "C4'" sing N N 58 DA "C5'" "H5'" sing N N 59 DA "C5'" "H5''" sing N N 60 DA "C4'" "O4'" sing N N 61 DA "C4'" "C3'" sing N N 62 DA "C4'" "H4'" sing N N 63 DA "O4'" "C1'" sing N N 64 DA "C3'" "O3'" sing N N 65 DA "C3'" "C2'" sing N N 66 DA "C3'" "H3'" sing N N 67 DA "O3'" "HO3'" sing N N 68 DA "C2'" "C1'" sing N N 69 DA "C2'" "H2'" sing N N 70 DA "C2'" "H2''" sing N N 71 DA "C1'" N9 sing N N 72 DA "C1'" "H1'" sing N N 73 DA N9 C8 sing Y N 74 DA N9 C4 sing Y N 75 DA C8 N7 doub Y N 76 DA C8 H8 sing N N 77 DA N7 C5 sing Y N 78 DA C5 C6 sing Y N 79 DA C5 C4 doub Y N 80 DA C6 N6 sing N N 81 DA C6 N1 doub Y N 82 DA N6 H61 sing N N 83 DA N6 H62 sing N N 84 DA N1 C2 sing Y N 85 DA C2 N3 doub Y N 86 DA C2 H2 sing N N 87 DA N3 C4 sing Y N 88 DC OP3 P sing N N 89 DC OP3 HOP3 sing N N 90 DC P OP1 doub N N 91 DC P OP2 sing N N 92 DC P "O5'" sing N N 93 DC OP2 HOP2 sing N N 94 DC "O5'" "C5'" sing N N 95 DC "C5'" "C4'" sing N N 96 DC "C5'" "H5'" sing N N 97 DC "C5'" "H5''" sing N N 98 DC "C4'" "O4'" sing N N 99 DC "C4'" "C3'" sing N N 100 DC "C4'" "H4'" sing N N 101 DC "O4'" "C1'" sing N N 102 DC "C3'" "O3'" sing N N 103 DC "C3'" "C2'" sing N N 104 DC "C3'" "H3'" sing N N 105 DC "O3'" "HO3'" sing N N 106 DC "C2'" "C1'" sing N N 107 DC "C2'" "H2'" sing N N 108 DC "C2'" "H2''" sing N N 109 DC "C1'" N1 sing N N 110 DC "C1'" "H1'" sing N N 111 DC N1 C2 sing N N 112 DC N1 C6 sing N N 113 DC C2 O2 doub N N 114 DC C2 N3 sing N N 115 DC N3 C4 doub N N 116 DC C4 N4 sing N N 117 DC C4 C5 sing N N 118 DC N4 H41 sing N N 119 DC N4 H42 sing N N 120 DC C5 C6 doub N N 121 DC C5 H5 sing N N 122 DC C6 H6 sing N N 123 DG OP3 P sing N N 124 DG OP3 HOP3 sing N N 125 DG P OP1 doub N N 126 DG P OP2 sing N N 127 DG P "O5'" sing N N 128 DG OP2 HOP2 sing N N 129 DG "O5'" "C5'" sing N N 130 DG "C5'" "C4'" sing N N 131 DG "C5'" "H5'" sing N N 132 DG "C5'" "H5''" sing N N 133 DG "C4'" "O4'" sing N N 134 DG "C4'" "C3'" sing N N 135 DG "C4'" "H4'" sing N N 136 DG "O4'" "C1'" sing N N 137 DG "C3'" "O3'" sing N N 138 DG "C3'" "C2'" sing N N 139 DG "C3'" "H3'" sing N N 140 DG "O3'" "HO3'" sing N N 141 DG "C2'" "C1'" sing N N 142 DG "C2'" "H2'" sing N N 143 DG "C2'" "H2''" sing N N 144 DG "C1'" N9 sing N N 145 DG "C1'" "H1'" sing N N 146 DG N9 C8 sing Y N 147 DG N9 C4 sing Y N 148 DG C8 N7 doub Y N 149 DG C8 H8 sing N N 150 DG N7 C5 sing Y N 151 DG C5 C6 sing N N 152 DG C5 C4 doub Y N 153 DG C6 O6 doub N N 154 DG C6 N1 sing N N 155 DG N1 C2 sing N N 156 DG N1 H1 sing N N 157 DG C2 N2 sing N N 158 DG C2 N3 doub N N 159 DG N2 H21 sing N N 160 DG N2 H22 sing N N 161 DG N3 C4 sing N N 162 DT OP3 P sing N N 163 DT OP3 HOP3 sing N N 164 DT P OP1 doub N N 165 DT P OP2 sing N N 166 DT P "O5'" sing N N 167 DT OP2 HOP2 sing N N 168 DT "O5'" "C5'" sing N N 169 DT "C5'" "C4'" sing N N 170 DT "C5'" "H5'" sing N N 171 DT "C5'" "H5''" sing N N 172 DT "C4'" "O4'" sing N N 173 DT "C4'" "C3'" sing N N 174 DT "C4'" "H4'" sing N N 175 DT "O4'" "C1'" sing N N 176 DT "C3'" "O3'" sing N N 177 DT "C3'" "C2'" sing N N 178 DT "C3'" "H3'" sing N N 179 DT "O3'" "HO3'" sing N N 180 DT "C2'" "C1'" sing N N 181 DT "C2'" "H2'" sing N N 182 DT "C2'" "H2''" sing N N 183 DT "C1'" N1 sing N N 184 DT "C1'" "H1'" sing N N 185 DT N1 C2 sing N N 186 DT N1 C6 sing N N 187 DT C2 O2 doub N N 188 DT C2 N3 sing N N 189 DT N3 C4 sing N N 190 DT N3 H3 sing N N 191 DT C4 O4 doub N N 192 DT C4 C5 sing N N 193 DT C5 C7 sing N N 194 DT C5 C6 doub N N 195 DT C7 H71 sing N N 196 DT C7 H72 sing N N 197 DT C7 H73 sing N N 198 DT C6 H6 sing N N 199 HOH O H1 sing N N 200 HOH O H2 sing N N 201 # _ndb_struct_conf_na.entry_id 1WV5 _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 10 1_555 -0.313 0.061 0.388 4.162 -5.889 3.975 1 A_DG1:DC20_B A 1 ? B 20 ? 19 1 1 A DC 2 1_555 B DG 9 1_555 0.370 -0.293 0.215 7.067 -15.574 2.751 2 A_DC2:DG19_B A 2 ? B 19 ? 19 1 1 A DG 3 1_555 B DC 8 1_555 -0.399 -0.128 0.002 -7.348 -15.271 -0.481 3 A_DG3:DC18_B A 3 ? B 18 ? 19 1 1 A DT 4 1_555 B DA 7 1_555 -0.296 -0.198 0.021 -0.517 -9.010 -4.331 4 A_DT4:DA17_B A 4 ? B 17 ? 20 1 1 A DA 5 1_555 B 2BT 6 1_555 0.310 -0.287 0.136 -0.489 -15.040 -0.444 5 A_DA5:2BT16_B A 5 ? B 16 ? 20 1 1 A 2BT 6 1_555 B DA 5 1_555 -0.163 -0.315 -0.041 -0.509 -18.164 0.313 6 A_2BT6:DA15_B A 6 ? B 15 ? 20 1 1 A DA 7 1_555 B DT 4 1_555 0.227 -0.161 -0.051 0.076 -16.118 6.435 7 A_DA7:DT14_B A 7 ? B 14 ? 20 1 1 A DC 8 1_555 B DG 3 1_555 -0.155 -0.131 -0.140 7.828 -12.733 2.950 8 A_DC8:DG13_B A 8 ? B 13 ? 19 1 1 A DG 9 1_555 B DC 2 1_555 -0.093 -0.176 -0.043 2.427 -7.499 3.377 9 A_DG9:DC12_B A 9 ? B 12 ? 19 1 1 A DC 10 1_555 B DG 1 1_555 0.171 -0.098 -0.109 15.146 -7.042 0.284 10 A_DC10:DG11_B A 10 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 10 1_555 A DC 2 1_555 B DG 9 1_555 -0.107 -1.416 3.258 0.060 1.855 37.641 -2.429 0.173 3.187 2.873 -0.092 37.686 1 AA_DG1DC2:DG19DC20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A DC 2 1_555 B DG 9 1_555 A DG 3 1_555 B DC 8 1_555 -0.533 -1.798 3.386 -0.680 15.391 28.817 -5.633 0.843 2.182 28.499 1.258 32.599 2 AA_DC2DG3:DC18DG19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DG 3 1_555 B DC 8 1_555 A DT 4 1_555 B DA 7 1_555 -0.537 -1.415 3.167 -1.179 4.871 31.414 -3.419 0.778 2.937 8.924 2.161 31.802 3 AA_DG3DT4:DA17DC18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A DT 4 1_555 B DA 7 1_555 A DA 5 1_555 B 2BT 6 1_555 0.641 -1.202 3.179 1.338 14.759 34.988 -3.565 -0.831 2.511 23.299 -2.112 37.906 4 AA_DT4DA5:2BT16DA17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A DA 5 1_555 B 2BT 6 1_555 A 2BT 6 1_555 B DA 5 1_555 -0.004 -1.372 3.309 2.490 9.017 29.908 -4.166 0.455 2.778 16.957 -4.683 31.305 5 AA_DA52BT6:DA152BT16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A 2BT 6 1_555 B DA 5 1_555 A DA 7 1_555 B DT 4 1_555 -0.106 -1.187 3.243 1.220 14.341 32.288 -3.915 0.342 2.503 24.335 -2.070 35.272 6 AA_2BT6DA7:DT14DA15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A DA 7 1_555 B DT 4 1_555 A DC 8 1_555 B DG 3 1_555 0.392 -1.134 3.163 0.497 4.349 28.128 -3.245 -0.690 2.964 8.880 -1.015 28.460 7 AA_DA7DC8:DG13DT14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A DC 8 1_555 B DG 3 1_555 A DG 9 1_555 B DC 2 1_555 0.096 -1.638 3.424 0.859 9.937 29.535 -4.890 -0.020 2.743 18.827 -1.628 31.138 8 AA_DC8DG9:DC12DG13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A DG 9 1_555 B DC 2 1_555 A DC 10 1_555 B DG 1 1_555 0.154 -1.385 3.163 -1.071 2.702 28.190 -3.419 -0.549 3.012 5.528 2.192 28.336 9 AA_DG9DC10:DG11DC12_BB A 9 ? B 12 ? A 10 ? B 11 ? # _atom_sites.entry_id 1WV5 _atom_sites.fract_transf_matrix[1][1] 0.022505 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022505 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014382 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_