data_1WV9 # _entry.id 1WV9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1WV9 RCSB RCSB024041 WWPDB D_1000024041 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id ttk003001651.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1WV9 _pdbx_database_status.recvd_initial_deposition_date 2004-12-12 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mizohata, E.' 1 'Hattori, M.' 2 'Tatsuguchi, A.' 3 'Terada, T.' 4 'Kuramitsu, S.' 5 'Shirouzu, M.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Crystal structure of the single-domain rhodanese homologue TTHA0613 from Thermus thermophilus HB8' _citation.journal_abbrev Proteins _citation.journal_volume 64 _citation.page_first 284 _citation.page_last 287 _citation.year 2006 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16680676 _citation.pdbx_database_id_DOI 10.1002/prot.20937 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Hattori, M.' 1 primary 'Mizohata, E.' 2 primary 'Tatsuguchi, A.' 3 primary 'Shibata, R.' 4 primary 'Kishishita, S.' 5 primary 'Murayama, K.' 6 primary 'Terada, T.' 7 primary 'Kuramitsu, S.' 8 primary 'Shirouzu, M.' 9 primary 'Yokoyama, S.' 10 # _cell.entry_id 1WV9 _cell.length_a 45.218 _cell.length_b 45.218 _cell.length_c 79.510 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1WV9 _symmetry.space_group_name_H-M 'P 31' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Rhodanese Homolog TT1651' 10479.888 2 ? ? ? ? 2 water nat water 18.015 132 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'hypothetical protein TTHA0613' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)RKVRPEELPALLEEGVLVVDVRPADRRSTPLPFAAEWVPLEKIQKGEHGLPRRPLLLVCEKGLLSQVAALYLEAE GYEA(MSE)SLEGGLQALTQGK ; _entity_poly.pdbx_seq_one_letter_code_can ;MRKVRPEELPALLEEGVLVVDVRPADRRSTPLPFAAEWVPLEKIQKGEHGLPRRPLLLVCEKGLLSQVAALYLEAEGYEA MSLEGGLQALTQGK ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ttk003001651.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 ARG n 1 3 LYS n 1 4 VAL n 1 5 ARG n 1 6 PRO n 1 7 GLU n 1 8 GLU n 1 9 LEU n 1 10 PRO n 1 11 ALA n 1 12 LEU n 1 13 LEU n 1 14 GLU n 1 15 GLU n 1 16 GLY n 1 17 VAL n 1 18 LEU n 1 19 VAL n 1 20 VAL n 1 21 ASP n 1 22 VAL n 1 23 ARG n 1 24 PRO n 1 25 ALA n 1 26 ASP n 1 27 ARG n 1 28 ARG n 1 29 SER n 1 30 THR n 1 31 PRO n 1 32 LEU n 1 33 PRO n 1 34 PHE n 1 35 ALA n 1 36 ALA n 1 37 GLU n 1 38 TRP n 1 39 VAL n 1 40 PRO n 1 41 LEU n 1 42 GLU n 1 43 LYS n 1 44 ILE n 1 45 GLN n 1 46 LYS n 1 47 GLY n 1 48 GLU n 1 49 HIS n 1 50 GLY n 1 51 LEU n 1 52 PRO n 1 53 ARG n 1 54 ARG n 1 55 PRO n 1 56 LEU n 1 57 LEU n 1 58 LEU n 1 59 VAL n 1 60 CYS n 1 61 GLU n 1 62 LYS n 1 63 GLY n 1 64 LEU n 1 65 LEU n 1 66 SER n 1 67 GLN n 1 68 VAL n 1 69 ALA n 1 70 ALA n 1 71 LEU n 1 72 TYR n 1 73 LEU n 1 74 GLU n 1 75 ALA n 1 76 GLU n 1 77 GLY n 1 78 TYR n 1 79 GLU n 1 80 ALA n 1 81 MSE n 1 82 SER n 1 83 LEU n 1 84 GLU n 1 85 GLY n 1 86 GLY n 1 87 LEU n 1 88 GLN n 1 89 ALA n 1 90 LEU n 1 91 THR n 1 92 GLN n 1 93 GLY n 1 94 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermus thermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 274 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'B834(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5SKN0_THET8 _struct_ref.pdbx_db_accession Q5SKN0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MRKVRPEELPALLEEGVLVVDVRPADRRSTPLPFAAEWVPLEKIQKGEHGLPRRPLLLVCEKGLLSQVAALYLEAEGYEA MSLEGGLQALTQGK ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1WV9 A 1 ? 94 ? Q5SKN0 1 ? 94 ? 1 94 2 1 1WV9 B 1 ? 94 ? Q5SKN0 1 ? 94 ? 1 94 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1WV9 MSE A 1 ? UNP Q5SKN0 MET 1 'MODIFIED RESIDUE' 1 1 1 1WV9 MSE A 81 ? UNP Q5SKN0 MET 81 'MODIFIED RESIDUE' 81 2 2 1WV9 MSE B 1 ? UNP Q5SKN0 MET 1 'MODIFIED RESIDUE' 1 3 2 1WV9 MSE B 81 ? UNP Q5SKN0 MET 81 'MODIFIED RESIDUE' 81 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1WV9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.27 _exptl_crystal.density_percent_sol 44 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'oil microbatch' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.3 _exptl_crystal_grow.pdbx_details 'PEG4000, MES, Sodium chloride, Tris-HCl, pH 6.3, oil microbatch, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type RIGAKU _diffrn_detector.pdbx_collection_date 2004-12-08 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.96200 1.0 2 0.97906 1.0 3 0.97938 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL26B1' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL26B1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.96200, 0.97906, 0.97938' # _reflns.entry_id 1WV9 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.0 _reflns.number_obs ? _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 30.1 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1WV9 _refine.ls_number_reflns_obs 23817 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 660564.38 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 27.90 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 97.3 _refine.ls_R_factor_obs 0.215 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.215 _refine.ls_R_factor_R_free 0.258 _refine.ls_R_factor_R_free_error 0.012 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 610 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 49.7 _refine.aniso_B[1][1] 0.79 _refine.aniso_B[2][2] 0.79 _refine.aniso_B[3][3] -1.58 _refine.aniso_B[1][2] 2.38 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.376933 _refine.solvent_model_param_bsol 64.543 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;This is a twinned structure. The twinning operator is (H,K,L) -> (H,-H-K,-L) and the twinning fraction is 0.5. The R-FACTOR is 0.215 and the R-FREE is 0.258 when this twinning operator is used. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1WV9 _refine_analyze.Luzzati_coordinate_error_obs 0.32 _refine_analyze.Luzzati_sigma_a_obs 0.38 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.51 _refine_analyze.Luzzati_sigma_a_free 0.36 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1333 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 132 _refine_hist.number_atoms_total 1465 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 27.90 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.19 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.2 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.79 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.07 _refine_ls_shell.number_reflns_R_work 1876 _refine_ls_shell.R_factor_R_work 0.349 _refine_ls_shell.percent_reflns_obs 86.1 _refine_ls_shell.R_factor_R_free 0.384 _refine_ls_shell.R_factor_R_free_error 0.043 _refine_ls_shell.percent_reflns_R_free 5.0 _refine_ls_shell.number_reflns_R_free 98 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 1WV9 _struct.title 'Crystal Structure of Rhodanese Homolog TT1651 from an Extremely Thermophilic Bacterium Thermus thermophilus HB8' _struct.pdbx_descriptor 'Rhodanese Homolog TT1651' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1WV9 _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;Rhodanese, Cdc25, Phosphatase, sulfurtransferase, RHOD, STRUCTURAL GENOMICS, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 5 ? GLU A 7 ? ARG A 5 GLU A 7 5 ? 3 HELX_P HELX_P2 2 GLU A 8 ? GLU A 15 ? GLU A 8 GLU A 15 1 ? 8 HELX_P HELX_P3 3 PRO A 40 ? GLN A 45 ? PRO A 40 GLN A 45 1 ? 6 HELX_P HELX_P4 4 GLY A 63 ? GLY A 77 ? GLY A 63 GLY A 77 1 ? 15 HELX_P HELX_P5 5 GLY A 85 ? ALA A 89 ? GLY A 85 ALA A 89 5 ? 5 HELX_P HELX_P6 6 GLU B 8 ? GLY B 16 ? GLU B 8 GLY B 16 1 ? 9 HELX_P HELX_P7 7 PRO B 40 ? LYS B 46 ? PRO B 40 LYS B 46 1 ? 7 HELX_P HELX_P8 8 LEU B 64 ? GLU B 76 ? LEU B 64 GLU B 76 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 80 C ? ? ? 1_555 A MSE 81 N ? ? A ALA 80 A MSE 81 1_555 ? ? ? ? ? ? ? 1.332 ? covale2 covale ? ? A MSE 81 C ? ? ? 1_555 A SER 82 N ? ? A MSE 81 A SER 82 1_555 ? ? ? ? ? ? ? 1.327 ? covale3 covale ? ? B MSE 1 C ? ? ? 1_555 B ARG 2 N ? ? B MSE 1 B ARG 2 1_555 ? ? ? ? ? ? ? 1.329 ? covale4 covale ? ? B ALA 80 C ? ? ? 1_555 B MSE 81 N ? ? B ALA 80 B MSE 81 1_555 ? ? ? ? ? ? ? 1.327 ? covale5 covale ? ? B MSE 81 C ? ? ? 1_555 B SER 82 N ? ? B MSE 81 B SER 82 1_555 ? ? ? ? ? ? ? 1.327 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel B 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 3 ? VAL A 4 ? LYS A 3 VAL A 4 A 2 ALA A 80 ? LEU A 83 ? ALA A 80 LEU A 83 A 3 LEU A 56 ? VAL A 59 ? LEU A 56 VAL A 59 A 4 LEU A 18 ? ASP A 21 ? LEU A 18 ASP A 21 A 5 GLU A 37 ? TRP A 38 ? GLU A 37 TRP A 38 B 1 LYS B 3 ? VAL B 4 ? LYS B 3 VAL B 4 B 2 ALA B 80 ? LEU B 83 ? ALA B 80 LEU B 83 B 3 LEU B 56 ? VAL B 59 ? LEU B 56 VAL B 59 B 4 LEU B 18 ? ASP B 21 ? LEU B 18 ASP B 21 B 5 GLU B 37 ? TRP B 38 ? GLU B 37 TRP B 38 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 4 ? N VAL A 4 O SER A 82 ? O SER A 82 A 2 3 O MSE A 81 ? O MSE A 81 N LEU A 58 ? N LEU A 58 A 3 4 O LEU A 57 ? O LEU A 57 N VAL A 20 ? N VAL A 20 A 4 5 N ASP A 21 ? N ASP A 21 O GLU A 37 ? O GLU A 37 B 1 2 N VAL B 4 ? N VAL B 4 O SER B 82 ? O SER B 82 B 2 3 O MSE B 81 ? O MSE B 81 N LEU B 58 ? N LEU B 58 B 3 4 O LEU B 57 ? O LEU B 57 N VAL B 20 ? N VAL B 20 B 4 5 N VAL B 19 ? N VAL B 19 O GLU B 37 ? O GLU B 37 # _database_PDB_matrix.entry_id 1WV9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1WV9 _atom_sites.fract_transf_matrix[1][1] 0.022115 _atom_sites.fract_transf_matrix[1][2] 0.012768 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025536 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012577 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 ? ? ? A . n A 1 2 ARG 2 2 2 ARG ARG A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 PRO 6 6 6 PRO PRO A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 ARG 23 23 23 ARG ARG A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 ASP 26 26 ? ? ? A . n A 1 27 ARG 27 27 ? ? ? A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 PRO 31 31 31 PRO PRO A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 PRO 33 33 33 PRO PRO A . n A 1 34 PHE 34 34 34 PHE PHE A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 TRP 38 38 38 TRP TRP A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 GLU 42 42 42 GLU GLU A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 GLN 45 45 45 GLN GLN A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 HIS 49 49 49 HIS HIS A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 PRO 52 52 52 PRO PRO A . n A 1 53 ARG 53 53 53 ARG ARG A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 PRO 55 55 55 PRO PRO A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 CYS 60 60 60 CYS CYS A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 GLY 63 63 63 GLY GLY A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 GLN 67 67 67 GLN GLN A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 TYR 72 72 72 TYR TYR A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 GLY 77 77 77 GLY GLY A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 ALA 80 80 80 ALA ALA A . n A 1 81 MSE 81 81 81 MSE MSE A . n A 1 82 SER 82 82 82 SER SER A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 GLN 88 88 88 GLN GLN A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 THR 91 91 ? ? ? A . n A 1 92 GLN 92 92 ? ? ? A . n A 1 93 GLY 93 93 ? ? ? A . n A 1 94 LYS 94 94 ? ? ? A . n B 1 1 MSE 1 1 1 MSE MSE B . n B 1 2 ARG 2 2 2 ARG ARG B . n B 1 3 LYS 3 3 3 LYS LYS B . n B 1 4 VAL 4 4 4 VAL VAL B . n B 1 5 ARG 5 5 5 ARG ARG B . n B 1 6 PRO 6 6 6 PRO PRO B . n B 1 7 GLU 7 7 7 GLU GLU B . n B 1 8 GLU 8 8 8 GLU GLU B . n B 1 9 LEU 9 9 9 LEU LEU B . n B 1 10 PRO 10 10 10 PRO PRO B . n B 1 11 ALA 11 11 11 ALA ALA B . n B 1 12 LEU 12 12 12 LEU LEU B . n B 1 13 LEU 13 13 13 LEU LEU B . n B 1 14 GLU 14 14 14 GLU GLU B . n B 1 15 GLU 15 15 15 GLU GLU B . n B 1 16 GLY 16 16 16 GLY GLY B . n B 1 17 VAL 17 17 17 VAL VAL B . n B 1 18 LEU 18 18 18 LEU LEU B . n B 1 19 VAL 19 19 19 VAL VAL B . n B 1 20 VAL 20 20 20 VAL VAL B . n B 1 21 ASP 21 21 21 ASP ASP B . n B 1 22 VAL 22 22 22 VAL VAL B . n B 1 23 ARG 23 23 23 ARG ARG B . n B 1 24 PRO 24 24 24 PRO PRO B . n B 1 25 ALA 25 25 25 ALA ALA B . n B 1 26 ASP 26 26 ? ? ? B . n B 1 27 ARG 27 27 ? ? ? B . n B 1 28 ARG 28 28 ? ? ? B . n B 1 29 SER 29 29 29 SER SER B . n B 1 30 THR 30 30 30 THR THR B . n B 1 31 PRO 31 31 31 PRO PRO B . n B 1 32 LEU 32 32 32 LEU LEU B . n B 1 33 PRO 33 33 33 PRO PRO B . n B 1 34 PHE 34 34 34 PHE PHE B . n B 1 35 ALA 35 35 35 ALA ALA B . n B 1 36 ALA 36 36 36 ALA ALA B . n B 1 37 GLU 37 37 37 GLU GLU B . n B 1 38 TRP 38 38 38 TRP TRP B . n B 1 39 VAL 39 39 39 VAL VAL B . n B 1 40 PRO 40 40 40 PRO PRO B . n B 1 41 LEU 41 41 41 LEU LEU B . n B 1 42 GLU 42 42 42 GLU GLU B . n B 1 43 LYS 43 43 43 LYS LYS B . n B 1 44 ILE 44 44 44 ILE ILE B . n B 1 45 GLN 45 45 45 GLN GLN B . n B 1 46 LYS 46 46 46 LYS LYS B . n B 1 47 GLY 47 47 47 GLY GLY B . n B 1 48 GLU 48 48 48 GLU GLU B . n B 1 49 HIS 49 49 49 HIS HIS B . n B 1 50 GLY 50 50 50 GLY GLY B . n B 1 51 LEU 51 51 51 LEU LEU B . n B 1 52 PRO 52 52 52 PRO PRO B . n B 1 53 ARG 53 53 53 ARG ARG B . n B 1 54 ARG 54 54 54 ARG ARG B . n B 1 55 PRO 55 55 55 PRO PRO B . n B 1 56 LEU 56 56 56 LEU LEU B . n B 1 57 LEU 57 57 57 LEU LEU B . n B 1 58 LEU 58 58 58 LEU LEU B . n B 1 59 VAL 59 59 59 VAL VAL B . n B 1 60 CYS 60 60 60 CYS CYS B . n B 1 61 GLU 61 61 61 GLU GLU B . n B 1 62 LYS 62 62 62 LYS LYS B . n B 1 63 GLY 63 63 63 GLY GLY B . n B 1 64 LEU 64 64 64 LEU LEU B . n B 1 65 LEU 65 65 65 LEU LEU B . n B 1 66 SER 66 66 66 SER SER B . n B 1 67 GLN 67 67 67 GLN GLN B . n B 1 68 VAL 68 68 68 VAL VAL B . n B 1 69 ALA 69 69 69 ALA ALA B . n B 1 70 ALA 70 70 70 ALA ALA B . n B 1 71 LEU 71 71 71 LEU LEU B . n B 1 72 TYR 72 72 72 TYR TYR B . n B 1 73 LEU 73 73 73 LEU LEU B . n B 1 74 GLU 74 74 74 GLU GLU B . n B 1 75 ALA 75 75 75 ALA ALA B . n B 1 76 GLU 76 76 76 GLU GLU B . n B 1 77 GLY 77 77 77 GLY GLY B . n B 1 78 TYR 78 78 78 TYR TYR B . n B 1 79 GLU 79 79 79 GLU GLU B . n B 1 80 ALA 80 80 80 ALA ALA B . n B 1 81 MSE 81 81 81 MSE MSE B . n B 1 82 SER 82 82 82 SER SER B . n B 1 83 LEU 83 83 83 LEU LEU B . n B 1 84 GLU 84 84 84 GLU GLU B . n B 1 85 GLY 85 85 85 GLY GLY B . n B 1 86 GLY 86 86 86 GLY GLY B . n B 1 87 LEU 87 87 87 LEU LEU B . n B 1 88 GLN 88 88 88 GLN GLN B . n B 1 89 ALA 89 89 89 ALA ALA B . n B 1 90 LEU 90 90 ? ? ? B . n B 1 91 THR 91 91 ? ? ? B . n B 1 92 GLN 92 92 ? ? ? B . n B 1 93 GLY 93 93 ? ? ? B . n B 1 94 LYS 94 94 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 95 1 HOH WAT A . C 2 HOH 2 96 2 HOH WAT A . C 2 HOH 3 97 3 HOH WAT A . C 2 HOH 4 98 5 HOH WAT A . C 2 HOH 5 99 6 HOH WAT A . C 2 HOH 6 100 7 HOH WAT A . C 2 HOH 7 101 8 HOH WAT A . C 2 HOH 8 102 9 HOH WAT A . C 2 HOH 9 103 11 HOH WAT A . C 2 HOH 10 104 12 HOH WAT A . C 2 HOH 11 105 13 HOH WAT A . C 2 HOH 12 106 14 HOH WAT A . C 2 HOH 13 107 15 HOH WAT A . C 2 HOH 14 108 24 HOH WAT A . C 2 HOH 15 109 25 HOH WAT A . C 2 HOH 16 110 26 HOH WAT A . C 2 HOH 17 111 27 HOH WAT A . C 2 HOH 18 112 28 HOH WAT A . C 2 HOH 19 113 29 HOH WAT A . C 2 HOH 20 114 33 HOH WAT A . C 2 HOH 21 115 38 HOH WAT A . C 2 HOH 22 116 39 HOH WAT A . C 2 HOH 23 117 40 HOH WAT A . C 2 HOH 24 118 41 HOH WAT A . C 2 HOH 25 119 42 HOH WAT A . C 2 HOH 26 120 43 HOH WAT A . C 2 HOH 27 121 44 HOH WAT A . C 2 HOH 28 122 45 HOH WAT A . C 2 HOH 29 123 46 HOH WAT A . C 2 HOH 30 124 47 HOH WAT A . C 2 HOH 31 125 56 HOH WAT A . C 2 HOH 32 126 57 HOH WAT A . C 2 HOH 33 127 58 HOH WAT A . C 2 HOH 34 128 60 HOH WAT A . C 2 HOH 35 129 61 HOH WAT A . C 2 HOH 36 130 62 HOH WAT A . C 2 HOH 37 131 63 HOH WAT A . C 2 HOH 38 132 64 HOH WAT A . C 2 HOH 39 133 65 HOH WAT A . C 2 HOH 40 134 66 HOH WAT A . C 2 HOH 41 135 67 HOH WAT A . C 2 HOH 42 136 68 HOH WAT A . C 2 HOH 43 137 69 HOH WAT A . C 2 HOH 44 138 74 HOH WAT A . C 2 HOH 45 139 80 HOH WAT A . C 2 HOH 46 140 81 HOH WAT A . C 2 HOH 47 141 82 HOH WAT A . C 2 HOH 48 142 83 HOH WAT A . C 2 HOH 49 143 84 HOH WAT A . C 2 HOH 50 144 85 HOH WAT A . C 2 HOH 51 145 86 HOH WAT A . C 2 HOH 52 146 87 HOH WAT A . C 2 HOH 53 147 88 HOH WAT A . C 2 HOH 54 148 90 HOH WAT A . C 2 HOH 55 149 94 HOH WAT A . C 2 HOH 56 150 95 HOH WAT A . C 2 HOH 57 151 96 HOH WAT A . C 2 HOH 58 152 99 HOH WAT A . C 2 HOH 59 153 100 HOH WAT A . C 2 HOH 60 154 101 HOH WAT A . C 2 HOH 61 155 102 HOH WAT A . C 2 HOH 62 156 103 HOH WAT A . C 2 HOH 63 157 106 HOH WAT A . C 2 HOH 64 158 107 HOH WAT A . C 2 HOH 65 159 109 HOH WAT A . C 2 HOH 66 160 110 HOH WAT A . C 2 HOH 67 161 111 HOH WAT A . C 2 HOH 68 162 112 HOH WAT A . C 2 HOH 69 163 113 HOH WAT A . C 2 HOH 70 164 114 HOH WAT A . C 2 HOH 71 165 117 HOH WAT A . C 2 HOH 72 166 118 HOH WAT A . C 2 HOH 73 167 119 HOH WAT A . C 2 HOH 74 168 120 HOH WAT A . C 2 HOH 75 169 127 HOH WAT A . C 2 HOH 76 170 128 HOH WAT A . C 2 HOH 77 171 130 HOH WAT A . D 2 HOH 1 95 4 HOH WAT B . D 2 HOH 2 96 10 HOH WAT B . D 2 HOH 3 97 16 HOH WAT B . D 2 HOH 4 98 17 HOH WAT B . D 2 HOH 5 99 18 HOH WAT B . D 2 HOH 6 100 19 HOH WAT B . D 2 HOH 7 101 20 HOH WAT B . D 2 HOH 8 102 21 HOH WAT B . D 2 HOH 9 103 22 HOH WAT B . D 2 HOH 10 104 23 HOH WAT B . D 2 HOH 11 105 30 HOH WAT B . D 2 HOH 12 106 31 HOH WAT B . D 2 HOH 13 107 32 HOH WAT B . D 2 HOH 14 108 34 HOH WAT B . D 2 HOH 15 109 35 HOH WAT B . D 2 HOH 16 110 36 HOH WAT B . D 2 HOH 17 111 37 HOH WAT B . D 2 HOH 18 112 48 HOH WAT B . D 2 HOH 19 113 49 HOH WAT B . D 2 HOH 20 114 50 HOH WAT B . D 2 HOH 21 115 51 HOH WAT B . D 2 HOH 22 116 52 HOH WAT B . D 2 HOH 23 117 53 HOH WAT B . D 2 HOH 24 118 54 HOH WAT B . D 2 HOH 25 119 55 HOH WAT B . D 2 HOH 26 120 59 HOH WAT B . D 2 HOH 27 121 70 HOH WAT B . D 2 HOH 28 122 71 HOH WAT B . D 2 HOH 29 123 72 HOH WAT B . D 2 HOH 30 124 73 HOH WAT B . D 2 HOH 31 125 75 HOH WAT B . D 2 HOH 32 126 76 HOH WAT B . D 2 HOH 33 127 77 HOH WAT B . D 2 HOH 34 128 78 HOH WAT B . D 2 HOH 35 129 79 HOH WAT B . D 2 HOH 36 130 89 HOH WAT B . D 2 HOH 37 131 91 HOH WAT B . D 2 HOH 38 132 92 HOH WAT B . D 2 HOH 39 133 93 HOH WAT B . D 2 HOH 40 134 97 HOH WAT B . D 2 HOH 41 135 98 HOH WAT B . D 2 HOH 42 136 104 HOH WAT B . D 2 HOH 43 137 105 HOH WAT B . D 2 HOH 44 138 108 HOH WAT B . D 2 HOH 45 139 115 HOH WAT B . D 2 HOH 46 140 116 HOH WAT B . D 2 HOH 47 141 121 HOH WAT B . D 2 HOH 48 142 122 HOH WAT B . D 2 HOH 49 143 123 HOH WAT B . D 2 HOH 50 144 124 HOH WAT B . D 2 HOH 51 145 125 HOH WAT B . D 2 HOH 52 146 126 HOH WAT B . D 2 HOH 53 147 129 HOH WAT B . D 2 HOH 54 148 131 HOH WAT B . D 2 HOH 55 149 132 HOH WAT B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 81 A MSE 81 ? MET SELENOMETHIONINE 2 B MSE 1 B MSE 1 ? MET SELENOMETHIONINE 3 B MSE 81 B MSE 81 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-06-19 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 6 ? ? -35.14 -37.73 2 1 PRO A 24 ? ? -75.25 -169.63 3 1 SER A 29 ? ? -73.68 -85.97 4 1 PRO A 31 ? ? -54.76 170.21 5 1 GLU A 79 ? ? -105.12 79.97 6 1 PRO B 33 ? ? -71.82 26.82 7 1 GLU B 48 ? ? -85.14 40.63 8 1 GLU B 61 ? ? -53.58 -74.69 9 1 GLU B 79 ? ? -100.27 77.70 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 1 ? A MSE 1 2 1 Y 1 A ASP 26 ? A ASP 26 3 1 Y 1 A ARG 27 ? A ARG 27 4 1 Y 1 A THR 91 ? A THR 91 5 1 Y 1 A GLN 92 ? A GLN 92 6 1 Y 1 A GLY 93 ? A GLY 93 7 1 Y 1 A LYS 94 ? A LYS 94 8 1 Y 1 B ASP 26 ? B ASP 26 9 1 Y 1 B ARG 27 ? B ARG 27 10 1 Y 1 B ARG 28 ? B ARG 28 11 1 Y 1 B LEU 90 ? B LEU 90 12 1 Y 1 B THR 91 ? B THR 91 13 1 Y 1 B GLN 92 ? B GLN 92 14 1 Y 1 B GLY 93 ? B GLY 93 15 1 Y 1 B LYS 94 ? B LYS 94 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #