HEADER TRANSFERASE 14-DEC-04 1WVC TITLE ALPHA-D-GLUCOSE-1-PHOSPHATE CYTIDYLYLTRANSFERASE COMPLEXED WITH CTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE-1-PHOSPHATE CYTIDYLYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALPHA-D-GLUCOSE-1-PHOSPHATE CYTIDYLYLTRANSFERASE, CDP- COMPND 5 GLUCOSE PYROPHOSPHORYLASE; COMPND 6 EC: 2.7.7.33; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHI; SOURCE 4 ORGANISM_TAXID: 220341; SOURCE 5 STRAIN: CT18; SOURCE 6 GENE: RFBF; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS CDP-GLUCOSE PYROPHOSPHORYLASE, NUCLEOTIDYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.M.KOROPATKIN,W.W.CLELAND,H.M.HOLDEN REVDAT 6 25-OCT-23 1WVC 1 REMARK SEQADV LINK REVDAT 5 13-JUL-11 1WVC 1 VERSN REVDAT 4 24-FEB-09 1WVC 1 VERSN REVDAT 3 24-JAN-06 1WVC 1 JRNL REVDAT 2 12-APR-05 1WVC 1 SOURCE SEQADV DBREF REVDAT 1 11-JAN-05 1WVC 0 JRNL AUTH N.M.KOROPATKIN,W.W.CLELAND,H.M.HOLDEN JRNL TITL KINETIC AND STRUCTURAL ANALYSIS OF JRNL TITL 2 ALPHA-D-GLUCOSE-1-PHOSPHATE CYTIDYLYLTRANSFERASE FROM JRNL TITL 3 SALMONELLA TYPHI. JRNL REF J.BIOL.CHEM. V. 280 10774 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15634670 JRNL DOI 10.1074/JBC.M414111200 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.500 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 11746 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1123 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 11746 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1996 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.010 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.200 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : 20.000; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WVC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-DEC-04. REMARK 100 THE DEPOSITION ID IS D_1000024044. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-AUG-04 REMARK 200 TEMPERATURE (KELVIN) : 130 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 32-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96410 REMARK 200 MONOCHROMATOR : DIAMOND 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11780 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06200 REMARK 200 FOR THE DATA SET : 26.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.27400 REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1TZF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 400, MAGNESIUM CHLORIDE, HEPES, PH REMARK 280 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 78.70000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 78.70000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 78.70000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 78.70000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 78.70000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 78.70000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 23540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -252.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 42.10000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 72.91934 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -42.10000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 72.91934 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 42.10000 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 72.91934 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 78.70000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 78.70000 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 -42.10000 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 72.91934 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 78.70000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 163 REMARK 465 GLU A 178 REMARK 465 LYS A 179 REMARK 465 PRO A 180 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 86 CG CD OE1 OE2 REMARK 470 ARG A 162 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 181 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN A 211 SD MET A 215 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 64 CD GLU A 64 OE2 0.077 REMARK 500 GLU A 82 CD GLU A 82 OE2 0.067 REMARK 500 GLU A 117 CD GLU A 117 OE2 0.079 REMARK 500 ASP A 183 N ASP A 183 CA -0.128 REMARK 500 GLY A 184 CA GLY A 184 C 0.099 REMARK 500 GLU A 212 CA GLU A 212 C -0.181 REMARK 500 GLU A 259 CD GLU A 259 OE2 0.078 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 50 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP A 101 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ASP A 101 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG A 114 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP A 131 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP A 131 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP A 135 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 135 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ASP A 137 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 143 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 167 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP A 183 CB - CA - C ANGL. DEV. = -18.3 DEGREES REMARK 500 ASP A 200 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 205 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 205 CB - CG - OD2 ANGL. DEV. = -7.4 DEGREES REMARK 500 ASP A 236 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP A 236 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP A 240 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 3 -7.27 -147.20 REMARK 500 ALA A 9 17.43 -147.76 REMARK 500 LEU A 16 28.33 -144.89 REMARK 500 LYS A 25 -36.24 -35.90 REMARK 500 HIS A 79 70.24 -106.67 REMARK 500 PRO A 94 38.85 -75.58 REMARK 500 VAL A 115 31.29 -90.22 REMARK 500 GLU A 117 -31.42 -33.08 REMARK 500 ASP A 137 79.27 -103.58 REMARK 500 PHE A 191 67.61 38.65 REMARK 500 GLN A 211 -73.15 -109.53 REMARK 500 PRO A 213 -70.85 -48.08 REMARK 500 LYS A 250 16.49 -62.54 REMARK 500 ALA A 253 72.76 -116.38 REMARK 500 LYS A 256 88.77 -65.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 131 OD2 REMARK 620 2 ASP A 236 OD1 68.1 REMARK 620 3 CTP A 401 O2A 108.5 100.5 REMARK 620 4 CTP A 401 O1A 61.8 70.5 49.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CTP A 401 O1G REMARK 620 2 CTP A 401 O3A 64.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CTP A 401 DBREF 1WVC A 4 259 UNP P26396 RFBF_SALTY 2 257 SEQADV 1WVC MET A 1 UNP P26396 CLONING ARTIFACT SEQADV 1WVC ALA A 2 UNP P26396 CLONING ARTIFACT SEQADV 1WVC SER A 3 UNP P26396 CLONING ARTIFACT SEQRES 1 A 259 MET ALA SER LYS ALA VAL ILE LEU ALA GLY GLY LEU GLY SEQRES 2 A 259 THR ARG LEU SER GLU GLU THR ILE VAL LYS PRO LYS PRO SEQRES 3 A 259 MET VAL GLU ILE GLY GLY LYS PRO ILE LEU TRP HIS ILE SEQRES 4 A 259 MET LYS MET TYR SER VAL HIS GLY ILE LYS ASP PHE ILE SEQRES 5 A 259 ILE CYS CYS GLY TYR LYS GLY TYR VAL ILE LYS GLU TYR SEQRES 6 A 259 PHE ALA ASN TYR PHE LEU HIS MET SER ASP VAL THR PHE SEQRES 7 A 259 HIS MET ALA GLU ASN ARG MET GLU VAL HIS HIS LYS ARG SEQRES 8 A 259 VAL GLU PRO TRP ASN VAL THR LEU VAL ASP THR GLY ASP SEQRES 9 A 259 SER SER MET THR GLY GLY ARG LEU LYS ARG VAL ALA GLU SEQRES 10 A 259 TYR VAL LYS ASP ASP GLU ALA PHE LEU PHE THR TYR GLY SEQRES 11 A 259 ASP GLY VAL ALA ASP LEU ASP ILE LYS ALA THR ILE ASP SEQRES 12 A 259 PHE HIS LYS ALA HIS GLY LYS LYS ALA THR LEU THR ALA SEQRES 13 A 259 THR PHE PRO PRO GLY ARG PHE GLY ALA LEU ASP ILE GLN SEQRES 14 A 259 ALA GLY GLN VAL ARG SER PHE GLN GLU LYS PRO LYS GLY SEQRES 15 A 259 ASP GLY ALA MET ILE ASN GLY GLY PHE PHE VAL LEU ASN SEQRES 16 A 259 PRO SER VAL ILE ASP LEU ILE ASP ASN ASP ALA THR THR SEQRES 17 A 259 TRP GLU GLN GLU PRO LEU MET THR LEU ALA GLN GLN GLY SEQRES 18 A 259 GLU LEU MET ALA PHE GLU HIS PRO GLY PHE TRP GLN PRO SEQRES 19 A 259 MET ASP THR LEU ARG ASP LYS VAL TYR LEU GLU GLY LEU SEQRES 20 A 259 TRP GLU LYS GLY LYS ALA PRO TRP LYS THR TRP GLU HET MG A 402 1 HET NI A 403 1 HET MG A 501 1 HET CTP A 401 29 HETNAM MG MAGNESIUM ION HETNAM NI NICKEL (II) ION HETNAM CTP CYTIDINE-5'-TRIPHOSPHATE FORMUL 2 MG 2(MG 2+) FORMUL 3 NI NI 2+ FORMUL 5 CTP C9 H16 N3 O14 P3 FORMUL 6 HOH *91(H2 O) HELIX 1 1 GLY A 13 ARG A 15 5 3 HELIX 2 2 LEU A 16 ILE A 21 1 6 HELIX 3 3 PRO A 24 MET A 27 5 4 HELIX 4 4 ILE A 35 HIS A 46 1 12 HELIX 5 5 GLY A 59 ASN A 68 1 10 HELIX 6 6 ASN A 68 SER A 74 1 7 HELIX 7 7 MET A 80 ASN A 83 5 4 HELIX 8 8 MET A 107 VAL A 115 1 9 HELIX 9 9 VAL A 115 LYS A 120 1 6 HELIX 10 10 ASP A 137 GLY A 149 1 13 HELIX 11 11 PRO A 196 ILE A 202 5 7 HELIX 12 12 GLU A 212 GLN A 220 1 9 HELIX 13 13 THR A 237 LYS A 250 1 14 SHEET 1 A 7 ASN A 96 ASP A 101 0 SHEET 2 A 7 ASP A 50 CYS A 55 1 N ILE A 53 O VAL A 100 SHEET 3 A 7 LYS A 4 LEU A 8 1 N ILE A 7 O ILE A 52 SHEET 4 A 7 PHE A 125 TYR A 129 1 O LEU A 126 N VAL A 6 SHEET 5 A 7 PHE A 192 LEU A 194 -1 O PHE A 192 N PHE A 127 SHEET 6 A 7 ALA A 152 THR A 157 -1 N THR A 153 O VAL A 193 SHEET 7 A 7 ILE A 187 ASN A 188 -1 O ILE A 187 N THR A 157 SHEET 1 B 7 ASN A 96 ASP A 101 0 SHEET 2 B 7 ASP A 50 CYS A 55 1 N ILE A 53 O VAL A 100 SHEET 3 B 7 LYS A 4 LEU A 8 1 N ILE A 7 O ILE A 52 SHEET 4 B 7 PHE A 125 TYR A 129 1 O LEU A 126 N VAL A 6 SHEET 5 B 7 PHE A 192 LEU A 194 -1 O PHE A 192 N PHE A 127 SHEET 6 B 7 ALA A 152 THR A 157 -1 N THR A 153 O VAL A 193 SHEET 7 B 7 LEU A 223 HIS A 228 1 O PHE A 226 N ALA A 156 SHEET 1 C 2 GLU A 29 ILE A 30 0 SHEET 2 C 2 LYS A 33 PRO A 34 -1 O LYS A 33 N ILE A 30 SHEET 1 D 2 VAL A 76 HIS A 79 0 SHEET 2 D 2 ARG A 84 VAL A 87 -1 O ARG A 84 N HIS A 79 SHEET 1 E 2 GLY A 132 ALA A 134 0 SHEET 2 E 2 TRP A 232 PRO A 234 -1 O GLN A 233 N VAL A 133 SHEET 1 F 2 LEU A 166 GLN A 169 0 SHEET 2 F 2 GLN A 172 PHE A 176 -1 O ARG A 174 N ASP A 167 LINK NE2 HIS A 79 NI NI A 403 1555 1555 2.49 LINK OD2 ASP A 131 MG MG A 402 1555 1555 2.02 LINK OD1 ASP A 236 MG MG A 402 1555 1555 2.13 LINK O2A CTP A 401 MG MG A 402 1555 1555 2.50 LINK O1A CTP A 401 MG MG A 402 1555 1555 3.10 LINK O1G CTP A 401 MG MG A 501 1555 1555 2.80 LINK O3A CTP A 401 MG MG A 501 1555 1555 2.41 SITE 1 AC1 4 ARG A 15 ASP A 131 ASP A 236 CTP A 401 SITE 1 AC2 1 HIS A 79 SITE 1 AC3 1 CTP A 401 SITE 1 AC4 21 LEU A 8 ALA A 9 GLY A 10 GLY A 11 SITE 2 AC4 21 LEU A 12 GLY A 13 THR A 14 ARG A 15 SITE 3 AC4 21 LYS A 25 SER A 106 MET A 107 ARG A 111 SITE 4 AC4 21 GLY A 130 ASP A 131 ASP A 236 MG A 402 SITE 5 AC4 21 MG A 501 HOH A1701 HOH A1907 HOH A2513 SITE 6 AC4 21 HOH A2515 CRYST1 84.200 84.200 157.400 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011876 0.006857 0.000000 0.00000 SCALE2 0.000000 0.013714 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006353 0.00000