HEADER LYASE 15-DEC-04 1WVG TITLE STRUCTURE OF CDP-D-GLUCOSE 4,6-DEHYDRATASE FROM SALMONELLA TYPHI COMPND MOL_ID: 1; COMPND 2 MOLECULE: CDP-GLUCOSE 4,6-DEHYDRATASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 4.2.1.45; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHI; SOURCE 4 ORGANISM_TAXID: 220341; SOURCE 5 STRAIN: CT18; SOURCE 6 GENE: DDHB; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-21A KEYWDS SHORT-CHAIN DEHYDROGENASE/REDUCTASE, ROSSMANN FOLD, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR N.M.KOROPATKIN,H.M.HOLDEN REVDAT 7 03-APR-24 1WVG 1 REMARK REVDAT 6 13-MAR-24 1WVG 1 REMARK SEQADV REVDAT 5 13-JUL-11 1WVG 1 VERSN REVDAT 4 24-FEB-09 1WVG 1 VERSN REVDAT 3 26-APR-05 1WVG 1 JRNL REVDAT 2 12-APR-05 1WVG 1 SOURCE SEQADV DBREF REVDAT 1 26-JAN-05 1WVG 0 JRNL AUTH N.M.KOROPATKIN,H.M.HOLDEN JRNL TITL STRUCTURE OF CDP-D-GLUCOSE 4,6-DEHYDRATASE FROM SALMONELLA JRNL TITL 2 TYPHI COMPLEXED WITH CDP-D-XYLOSE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 61 365 2005 JRNL REFN ISSN 0907-4449 JRNL PMID 15805590 JRNL DOI 10.1107/S0907444904033876 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 68364 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 6904 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.2030 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 68364 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5649 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 326 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.011 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.250 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : 17.900; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WVG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-DEC-04. REMARK 100 THE DEPOSITION ID IS D_1000024048. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAR-04 REMARK 200 TEMPERATURE (KELVIN) : 130 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96411 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI-111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68364 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05500 REMARK 200 FOR THE DATA SET : 37.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.24800 REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: MODEL FROM MAD EXPERIMENT PERFORMED ON SE-MET REMARK 200 SUBSTITUTED CDP-D-GLUCOSE 4,6-DEHYDRATASE FROM SALMONELLA TYPHI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM/POTASSIUM PHOSPHATE, HOMOPIPES, REMARK 280 PH 4.2, BATCH METHOD, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.93333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 101.86667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 101.86667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 50.93333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: HOMOTETRAMER; THERE IS ONE DIMER PER ASYMMETRIC UNIT, REMARK 300 THE TETRAMER CAN BE GENERATED BY 2 FOLD ROTATION ABOUT THE Z-AXIS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 101.86667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 295 REMARK 465 GLU A 296 REMARK 465 ASN A 297 REMARK 465 HIS A 298 REMARK 465 THR A 359 REMARK 465 THR A 360 REMARK 465 ARG A 361 REMARK 465 TYR B 1183 REMARK 465 GLU B 1184 REMARK 465 ASP B 1288 REMARK 465 GLU B 1301 REMARK 465 ALA B 1302 REMARK 465 ALA B 1358 REMARK 465 THR B 1359 REMARK 465 THR B 1360 REMARK 465 ARG B 1361 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 119 OG1 CG2 REMARK 470 GLU B1033 CG CD OE1 OE2 REMARK 470 THR B1119 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 47 O HOH A 2020 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 3 ND2 ASN B 1220 6655 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 33 CD GLU A 33 OE2 0.074 REMARK 500 GLU A 53 CD GLU A 53 OE2 0.072 REMARK 500 GLU A 72 CD GLU A 72 OE2 0.074 REMARK 500 GLU A 184 CD GLU A 184 OE2 0.067 REMARK 500 GLU A 218 CD GLU A 218 OE2 0.074 REMARK 500 GLU B1053 CD GLU B1053 OE2 0.070 REMARK 500 GLU B1062 CD GLU B1062 OE2 0.071 REMARK 500 GLU B1080 CD GLU B1080 OE2 0.070 REMARK 500 GLU B1100 CD GLU B1100 OE2 0.080 REMARK 500 GLU B1254 CD GLU B1254 OE2 0.071 REMARK 500 GLU B1342 CD GLU B1342 OE2 0.076 REMARK 500 GLU B1351 CD GLU B1351 OE2 0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 5 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 5 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ALA A 45 N - CA - CB ANGL. DEV. = 8.8 DEGREES REMARK 500 ASP A 59 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 59 CB - CG - OD2 ANGL. DEV. = -7.7 DEGREES REMARK 500 ASP A 67 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP A 67 CB - CG - OD2 ANGL. DEV. = -9.2 DEGREES REMARK 500 ASP A 70 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 70 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP A 157 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP A 207 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ARG A 208 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A 212 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 215 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP A 270 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 270 CB - CG - OD2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ASP A 279 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 287 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP A 288 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 MET A 314 CB - CA - C ANGL. DEV. = -12.3 DEGREES REMARK 500 ASP A 343 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B1044 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP B1059 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ASP B1067 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP B1067 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ASP B1070 N - CA - CB ANGL. DEV. = 12.0 DEGREES REMARK 500 ASP B1070 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP B1070 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG B1075 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP B1135 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP B1139 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP B1139 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ASP B1203 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG B1208 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG B1226 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 PRO B1228 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 PRO B1228 C - N - CD ANGL. DEV. = -15.9 DEGREES REMARK 500 ARG B1232 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B1267 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG B1267 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP B1268 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP B1270 CB - CG - OD2 ANGL. DEV. = -7.2 DEGREES REMARK 500 ASP B1279 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP B1343 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP B1343 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG B1350 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 45 130.94 -34.46 REMARK 500 PRO A 49 -179.91 -69.44 REMARK 500 THR A 133 -111.90 -104.51 REMARK 500 ALA A 205 145.55 -39.28 REMARK 500 ASP A 207 -0.92 68.45 REMARK 500 ASN A 219 42.00 -92.52 REMARK 500 ASN A 220 46.30 26.05 REMARK 500 ASP A 287 66.55 24.57 REMARK 500 ASP A 288 -19.73 81.64 REMARK 500 ALA A 289 133.16 -30.56 REMARK 500 PHE B1022 -71.40 -55.11 REMARK 500 SER B1098 -32.72 -35.01 REMARK 500 GLN B1101 53.28 -115.81 REMARK 500 THR B1133 -106.39 -109.22 REMARK 500 ALA B1181 -5.38 -53.87 REMARK 500 ASN B1220 6.51 59.68 REMARK 500 ASN B1227 88.05 -160.98 REMARK 500 GLU B1260 -169.19 -163.64 REMARK 500 ASP B1294 -169.21 -71.85 REMARK 500 MET B1356 6.05 -64.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE APR A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CXY A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE APR B 1400 DBREF 1WVG A 3 361 UNP P26397 RFBG_SALTY 1 359 DBREF 1WVG B 1003 1361 UNP P26397 RFBG_SALTY 1 359 SEQADV 1WVG SER A 3 UNP P26397 MET 1 CONFLICT SEQADV 1WVG SER B 1003 UNP P26397 MET 1 CONFLICT SEQRES 1 A 359 SER ILE ASP LYS ASN PHE TRP GLN GLY LYS ARG VAL PHE SEQRES 2 A 359 VAL THR GLY HIS THR GLY PHE LYS GLY SER TRP LEU SER SEQRES 3 A 359 LEU TRP LEU THR GLU MET GLY ALA ILE VAL LYS GLY TYR SEQRES 4 A 359 ALA LEU ASP ALA PRO THR VAL PRO SER LEU PHE GLU ILE SEQRES 5 A 359 VAL ARG LEU ASN ASP LEU MET GLU SER HIS ILE GLY ASP SEQRES 6 A 359 ILE ARG ASP PHE GLU LYS LEU ARG SER SER ILE ALA GLU SEQRES 7 A 359 PHE LYS PRO GLU ILE VAL PHE HIS MET ALA ALA GLN PRO SEQRES 8 A 359 LEU VAL ARG LEU SER TYR GLU GLN PRO ILE LYS THR TYR SEQRES 9 A 359 SER THR ASN VAL MET GLY THR VAL HIS LEU LEU GLU THR SEQRES 10 A 359 VAL LYS GLN VAL GLY ASN ILE LYS ALA VAL VAL ASN ILE SEQRES 11 A 359 THR SER ASP LYS CYS TYR ASP ASN ARG GLU TRP VAL TRP SEQRES 12 A 359 GLY TYR ARG GLU ASN GLU PRO MET GLY GLY TYR ASP PRO SEQRES 13 A 359 TYR SER ASN SER LYS GLY CYS ALA GLU LEU VAL ALA SER SEQRES 14 A 359 ALA PHE ARG ASN SER PHE PHE ASN PRO ALA ASN TYR GLU SEQRES 15 A 359 GLN HIS GLY VAL GLY LEU ALA SER VAL ARG ALA GLY ASN SEQRES 16 A 359 VAL ILE GLY GLY GLY ASP TRP ALA LYS ASP ARG LEU ILE SEQRES 17 A 359 PRO ASP ILE LEU ARG SER PHE GLU ASN ASN GLN GLN VAL SEQRES 18 A 359 ILE ILE ARG ASN PRO TYR SER ILE ARG PRO TRP GLN HIS SEQRES 19 A 359 VAL LEU GLU PRO LEU SER GLY TYR ILE VAL VAL ALA GLN SEQRES 20 A 359 ARG LEU TYR THR GLU GLY ALA LYS PHE SER GLU GLY TRP SEQRES 21 A 359 ASN PHE GLY PRO ARG ASP GLU ASP ALA LYS THR VAL GLU SEQRES 22 A 359 PHE ILE VAL ASP LYS MET VAL THR LEU TRP GLY ASP ASP SEQRES 23 A 359 ALA SER TRP LEU LEU ASP GLY GLU ASN HIS PRO HIS GLU SEQRES 24 A 359 ALA HIS TYR LEU LYS LEU ASP CYS SER LYS ALA ASN MET SEQRES 25 A 359 GLN LEU GLY TRP HIS PRO ARG TRP GLY LEU THR GLU THR SEQRES 26 A 359 LEU SER ARG ILE VAL LYS TRP HIS LYS ALA TRP ILE ARG SEQRES 27 A 359 GLY GLU ASP MET LEU ILE CYS SER LYS ARG GLU ILE SER SEQRES 28 A 359 ASP TYR MET SER ALA THR THR ARG SEQRES 1 B 359 SER ILE ASP LYS ASN PHE TRP GLN GLY LYS ARG VAL PHE SEQRES 2 B 359 VAL THR GLY HIS THR GLY PHE LYS GLY SER TRP LEU SER SEQRES 3 B 359 LEU TRP LEU THR GLU MET GLY ALA ILE VAL LYS GLY TYR SEQRES 4 B 359 ALA LEU ASP ALA PRO THR VAL PRO SER LEU PHE GLU ILE SEQRES 5 B 359 VAL ARG LEU ASN ASP LEU MET GLU SER HIS ILE GLY ASP SEQRES 6 B 359 ILE ARG ASP PHE GLU LYS LEU ARG SER SER ILE ALA GLU SEQRES 7 B 359 PHE LYS PRO GLU ILE VAL PHE HIS MET ALA ALA GLN PRO SEQRES 8 B 359 LEU VAL ARG LEU SER TYR GLU GLN PRO ILE LYS THR TYR SEQRES 9 B 359 SER THR ASN VAL MET GLY THR VAL HIS LEU LEU GLU THR SEQRES 10 B 359 VAL LYS GLN VAL GLY ASN ILE LYS ALA VAL VAL ASN ILE SEQRES 11 B 359 THR SER ASP LYS CYS TYR ASP ASN ARG GLU TRP VAL TRP SEQRES 12 B 359 GLY TYR ARG GLU ASN GLU PRO MET GLY GLY TYR ASP PRO SEQRES 13 B 359 TYR SER ASN SER LYS GLY CYS ALA GLU LEU VAL ALA SER SEQRES 14 B 359 ALA PHE ARG ASN SER PHE PHE ASN PRO ALA ASN TYR GLU SEQRES 15 B 359 GLN HIS GLY VAL GLY LEU ALA SER VAL ARG ALA GLY ASN SEQRES 16 B 359 VAL ILE GLY GLY GLY ASP TRP ALA LYS ASP ARG LEU ILE SEQRES 17 B 359 PRO ASP ILE LEU ARG SER PHE GLU ASN ASN GLN GLN VAL SEQRES 18 B 359 ILE ILE ARG ASN PRO TYR SER ILE ARG PRO TRP GLN HIS SEQRES 19 B 359 VAL LEU GLU PRO LEU SER GLY TYR ILE VAL VAL ALA GLN SEQRES 20 B 359 ARG LEU TYR THR GLU GLY ALA LYS PHE SER GLU GLY TRP SEQRES 21 B 359 ASN PHE GLY PRO ARG ASP GLU ASP ALA LYS THR VAL GLU SEQRES 22 B 359 PHE ILE VAL ASP LYS MET VAL THR LEU TRP GLY ASP ASP SEQRES 23 B 359 ALA SER TRP LEU LEU ASP GLY GLU ASN HIS PRO HIS GLU SEQRES 24 B 359 ALA HIS TYR LEU LYS LEU ASP CYS SER LYS ALA ASN MET SEQRES 25 B 359 GLN LEU GLY TRP HIS PRO ARG TRP GLY LEU THR GLU THR SEQRES 26 B 359 LEU SER ARG ILE VAL LYS TRP HIS LYS ALA TRP ILE ARG SEQRES 27 B 359 GLY GLU ASP MET LEU ILE CYS SER LYS ARG GLU ILE SER SEQRES 28 B 359 ASP TYR MET SER ALA THR THR ARG HET APR A 400 36 HET CXY A 401 34 HET APR B1400 36 HETNAM APR ADENOSINE-5-DIPHOSPHORIBOSE HETNAM CXY CYTIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE FORMUL 3 APR 2(C15 H23 N5 O14 P2) FORMUL 4 CXY C14 H23 N3 O15 P2 FORMUL 6 HOH *326(H2 O) HELIX 1 1 ASP A 5 GLN A 10 1 6 HELIX 2 2 GLY A 21 MET A 34 1 14 HELIX 3 3 SER A 50 VAL A 55 1 6 HELIX 4 4 ARG A 56 LEU A 60 5 5 HELIX 5 5 ASP A 70 LYS A 82 1 13 HELIX 6 6 LEU A 94 GLN A 101 1 8 HELIX 7 7 GLN A 101 GLY A 124 1 24 HELIX 8 8 SER A 134 TYR A 138 5 5 HELIX 9 9 ASP A 157 PHE A 178 1 22 HELIX 10 10 ASN A 179 ALA A 181 5 3 HELIX 11 11 ASN A 182 GLY A 187 1 6 HELIX 12 12 ARG A 208 ASN A 219 1 12 HELIX 13 13 VAL A 237 GLU A 254 1 18 HELIX 14 14 GLU A 254 SER A 259 1 6 HELIX 15 15 ARG A 267 ALA A 271 5 5 HELIX 16 16 THR A 273 GLY A 286 1 14 HELIX 17 17 CYS A 309 LEU A 316 1 8 HELIX 18 18 GLY A 323 ARG A 340 1 18 HELIX 19 19 ASP A 343 ALA A 358 1 16 HELIX 20 20 ASP B 1005 GLN B 1010 1 6 HELIX 21 21 GLY B 1021 MET B 1034 1 14 HELIX 22 22 SER B 1050 VAL B 1055 1 6 HELIX 23 23 ARG B 1056 MET B 1061 1 6 HELIX 24 24 ASP B 1070 LYS B 1082 1 13 HELIX 25 25 LEU B 1094 GLN B 1101 1 8 HELIX 26 26 GLN B 1101 VAL B 1110 1 10 HELIX 27 27 VAL B 1110 GLY B 1124 1 15 HELIX 28 28 SER B 1134 TYR B 1138 5 5 HELIX 29 29 ASP B 1157 PHE B 1178 1 22 HELIX 30 30 ARG B 1208 ASN B 1219 1 12 HELIX 31 31 VAL B 1237 GLY B 1255 1 19 HELIX 32 32 ALA B 1256 SER B 1259 5 4 HELIX 33 33 ARG B 1267 ALA B 1271 5 5 HELIX 34 34 VAL B 1274 GLY B 1286 1 13 HELIX 35 35 CYS B 1309 GLY B 1317 1 9 HELIX 36 36 GLY B 1323 ARG B 1340 1 18 HELIX 37 37 ASP B 1343 MET B 1356 1 14 SHEET 1 A 7 GLU A 62 ILE A 65 0 SHEET 2 A 7 ILE A 37 ALA A 42 1 N GLY A 40 O GLU A 62 SHEET 3 A 7 ARG A 13 THR A 17 1 N VAL A 14 O ILE A 37 SHEET 4 A 7 ILE A 85 HIS A 88 1 O ILE A 85 N PHE A 15 SHEET 5 A 7 ALA A 128 ILE A 132 1 O VAL A 130 N VAL A 86 SHEET 6 A 7 GLY A 189 ALA A 195 1 O ALA A 191 N ASN A 131 SHEET 7 A 7 GLY A 261 PHE A 264 1 O TRP A 262 N ARG A 194 SHEET 1 B 2 ASN A 197 ILE A 199 0 SHEET 2 B 2 TRP A 234 HIS A 236 1 O GLN A 235 N ASN A 197 SHEET 1 C 2 VAL A 223 ILE A 225 0 SHEET 2 C 2 TRP A 291 LEU A 293 1 O LEU A 292 N VAL A 223 SHEET 1 D 7 GLU B1062 ILE B1065 0 SHEET 2 D 7 ILE B1037 ALA B1042 1 N GLY B1040 O HIS B1064 SHEET 3 D 7 ARG B1013 THR B1017 1 N VAL B1016 O LYS B1039 SHEET 4 D 7 ILE B1085 HIS B1088 1 O ILE B1085 N PHE B1015 SHEET 5 D 7 ALA B1128 ILE B1132 1 O ALA B1128 N VAL B1086 SHEET 6 D 7 GLY B1189 ARG B1194 1 O ALA B1191 N ASN B1131 SHEET 7 D 7 GLY B1261 ASN B1263 1 O TRP B1262 N ARG B1194 SHEET 1 E 2 GLY B1146 TYR B1147 0 SHEET 2 E 2 LYS B1306 LEU B1307 1 O LYS B1306 N TYR B1147 SHEET 1 F 2 VAL B1198 ILE B1199 0 SHEET 2 F 2 GLN B1235 HIS B1236 1 O GLN B1235 N ILE B1199 SHEET 1 G 2 VAL B1223 ILE B1225 0 SHEET 2 G 2 TRP B1291 LEU B1293 1 O LEU B1292 N VAL B1223 SHEET 1 H 2 ILE B1231 ARG B1232 0 SHEET 2 H 2 LYS B1272 THR B1273 -1 O LYS B1272 N ARG B1232 CISPEP 1 VAL A 48 PRO A 49 0 0.84 CISPEP 2 VAL B 1048 PRO B 1049 0 1.22 SITE 1 AC1 29 GLY A 18 THR A 20 GLY A 21 PHE A 22 SITE 2 AC1 29 LYS A 23 ALA A 42 LEU A 43 GLY A 66 SITE 3 AC1 29 ASP A 67 ILE A 68 ARG A 69 MET A 89 SITE 4 AC1 29 ALA A 90 ALA A 91 PRO A 93 LYS A 104 SITE 5 AC1 29 THR A 108 ILE A 132 TYR A 159 LYS A 163 SITE 6 AC1 29 ARG A 208 HOH A1602 HOH A1603 HOH A1606 SITE 7 AC1 29 HOH A1607 HOH A1612 HOH A1618 HOH A2533 SITE 8 AC1 29 HOH A2535 SITE 1 AC2 26 PRO A 93 VAL A 95 SER A 134 ASP A 135 SITE 2 AC2 26 LYS A 136 TYR A 159 ASN A 197 ASP A 207 SITE 3 AC2 26 ARG A 208 LEU A 209 ASP A 212 ILE A 224 SITE 4 AC2 26 ILE A 225 ARG A 226 ASN A 227 SER A 230 SITE 5 AC2 26 ARG A 232 VAL A 274 GLU A 301 HOH A1655 SITE 6 AC2 26 HOH A1729 HOH A1730 HOH A1806 HOH A1807 SITE 7 AC2 26 HOH A2536 HOH A2709 SITE 1 AC3 22 GLY B1018 HIS B1019 THR B1020 GLY B1021 SITE 2 AC3 22 PHE B1022 LYS B1023 ALA B1042 LEU B1043 SITE 3 AC3 22 PRO B1046 GLY B1066 ASP B1067 ILE B1068 SITE 4 AC3 22 ARG B1069 MET B1089 ALA B1090 ALA B1091 SITE 5 AC3 22 PRO B1093 ILE B1132 THR B1133 TYR B1159 SITE 6 AC3 22 LYS B1163 HOH B1791 CRYST1 93.900 93.900 152.800 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010633 0.006139 0.000000 0.00000 SCALE2 0.000000 0.012278 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006587 0.00000 CONECT 5669 5670 5674 CONECT 5670 5669 5671 CONECT 5671 5670 5672 CONECT 5672 5671 5673 5678 CONECT 5673 5672 5674 5676 CONECT 5674 5669 5673 5675 CONECT 5675 5674 CONECT 5676 5673 5677 CONECT 5677 5676 5678 CONECT 5678 5672 5677 5679 CONECT 5679 5678 5680 5684 CONECT 5680 5679 5681 5682 CONECT 5681 5680 CONECT 5682 5680 5683 5685 CONECT 5683 5682 CONECT 5684 5679 5685 CONECT 5685 5682 5684 5686 CONECT 5686 5685 5687 CONECT 5687 5686 5688 CONECT 5688 5687 5689 5690 5691 CONECT 5689 5688 CONECT 5690 5688 CONECT 5691 5688 5692 CONECT 5692 5691 5693 5694 5695 CONECT 5693 5692 CONECT 5694 5692 CONECT 5695 5692 5696 CONECT 5696 5695 5704 CONECT 5697 5699 5704 CONECT 5698 5699 CONECT 5699 5697 5698 5701 CONECT 5700 5701 CONECT 5701 5699 5700 5703 CONECT 5702 5703 CONECT 5703 5701 5702 5704 CONECT 5704 5696 5697 5703 CONECT 5705 5706 CONECT 5706 5705 5707 5708 5709 CONECT 5707 5706 CONECT 5708 5706 5730 CONECT 5709 5706 5710 CONECT 5710 5709 5711 5712 5713 CONECT 5711 5710 CONECT 5712 5710 CONECT 5713 5710 5714 CONECT 5714 5713 5715 CONECT 5715 5714 5716 5717 CONECT 5716 5715 5721 CONECT 5717 5715 5718 5719 CONECT 5718 5717 CONECT 5719 5717 5720 5721 CONECT 5720 5719 CONECT 5721 5716 5719 5722 CONECT 5722 5721 5723 5727 CONECT 5723 5722 5724 CONECT 5724 5723 5725 CONECT 5725 5724 5726 5728 CONECT 5726 5725 5727 CONECT 5727 5722 5726 5729 CONECT 5728 5725 CONECT 5729 5727 CONECT 5730 5708 5731 5738 CONECT 5731 5730 5732 5735 CONECT 5732 5731 5733 5736 CONECT 5733 5732 5734 5737 CONECT 5734 5733 5738 CONECT 5735 5731 CONECT 5736 5732 CONECT 5737 5733 CONECT 5738 5730 5734 CONECT 5739 5740 5744 CONECT 5740 5739 5741 CONECT 5741 5740 5742 CONECT 5742 5741 5743 5748 CONECT 5743 5742 5744 5746 CONECT 5744 5739 5743 5745 CONECT 5745 5744 CONECT 5746 5743 5747 CONECT 5747 5746 5748 CONECT 5748 5742 5747 5749 CONECT 5749 5748 5750 5754 CONECT 5750 5749 5751 5752 CONECT 5751 5750 CONECT 5752 5750 5753 5755 CONECT 5753 5752 CONECT 5754 5749 5755 CONECT 5755 5752 5754 5756 CONECT 5756 5755 5757 CONECT 5757 5756 5758 CONECT 5758 5757 5759 5760 5761 CONECT 5759 5758 CONECT 5760 5758 CONECT 5761 5758 5762 CONECT 5762 5761 5763 5764 5765 CONECT 5763 5762 CONECT 5764 5762 CONECT 5765 5762 5766 CONECT 5766 5765 5774 CONECT 5767 5769 5774 CONECT 5768 5769 CONECT 5769 5767 5768 5771 CONECT 5770 5771 CONECT 5771 5769 5770 5773 CONECT 5772 5773 CONECT 5773 5771 5772 5774 CONECT 5774 5766 5767 5773 MASTER 392 0 3 37 26 0 21 6 6081 2 106 56 END