HEADER TOXIN 24-DEC-04 1WVR TITLE CRYSTAL STRUCTURE OF A CRISP FAMILY CA-CHANNEL BLOCKER DERIVED FROM TITLE 2 SNAKE VENOM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIFLIN; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRIMERESURUS FLAVOVIRIDIS; SOURCE 3 ORGANISM_TAXID: 88087; SOURCE 4 STRAIN: TOKUNOSHIMA KEYWDS CYSTEINE-RICH SECRETORY PROTEIN, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.SHIKAMOTO,K.SUTO,Y.YAMAZAKI,T.MORITA,H.MIZUNO REVDAT 4 11-OCT-17 1WVR 1 REMARK REVDAT 3 13-JUL-11 1WVR 1 VERSN REVDAT 2 24-FEB-09 1WVR 1 VERSN REVDAT 1 05-JUL-05 1WVR 0 JRNL AUTH Y.SHIKAMOTO,K.SUTO,Y.YAMAZAKI,T.MORITA,H.MIZUNO JRNL TITL CRYSTAL STRUCTURE OF A CRISP FAMILY CA2+ -CHANNEL BLOCKER JRNL TITL 2 DERIVED FROM SNAKE VENOM. JRNL REF J.MOL.BIOL. V. 350 735 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 15953617 JRNL DOI 10.1016/J.JMB.2005.05.020 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.YAMAZAKI,H.KOIKE,Y.SUGIYAMA,K.MOTOYOSHI,T.WADA, REMARK 1 AUTH 2 S.HISHINUMA,M.MITA,T.MORITA REMARK 1 TITL CLONING AND CHARACTERIZATION OF NOVEL SNAKE VENOM PROTEINS REMARK 1 TITL 2 THAT BLOCK SMOOTH MUSCLE CONTRACTION REMARK 1 REF EUR.J.BIOCHEM. V. 269 2708 2002 REMARK 1 REFN ISSN 0014-2956 REMARK 1 PMID 12047379 REMARK 1 DOI 10.1046/J.1432-1033.2002.02940.X REMARK 1 REFERENCE 2 REMARK 1 AUTH Y.YAMAZAKI,F.HYODO,T.MORITA REMARK 1 TITL WIDE DISTRIBUTION OF CYSTEINE-RICH SECRETORY PROTEINS IN REMARK 1 TITL 2 SNAKE VENOMS: ISOLATION AND CLONING OF NOVEL SNAKE VENOM REMARK 1 TITL 3 CYSTEINE-RICH SECRETORY PROTEINS REMARK 1 REF ARCH.BIOCHEM.BIOPHYS. V. 412 133 2003 REMARK 1 REFN ISSN 0003-9861 REMARK 1 PMID 12646276 REMARK 1 DOI 10.1016/S0003-9861(03)00028-6 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1353400.470 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 12235 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 609 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.011 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1899 REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE : 0.3650 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 95 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.037 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1734 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.57000 REMARK 3 B22 (A**2) : 9.57000 REMARK 3 B33 (A**2) : -19.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : 0.33 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.44 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.37 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.810 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.360 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.260 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.250 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.210 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 47.63 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : ACT.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : ACT.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WVR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-DEC-04. REMARK 100 THE DEPOSITION ID IS D_1000024059. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-02; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; NULL REMARK 200 RADIATION SOURCE : SPRING-8; NULL REMARK 200 BEAMLINE : BL41XU; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0403; 1.0403, 1.0406, 1.0457 REMARK 200 MONOCHROMATOR : SILICON; NULL REMARK 200 OPTICS : MIRRORS; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13969 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 38.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 8.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.51800 REMARK 200 R SYM FOR SHELL (I) : 0.48000 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: CRYSTAL 1 SINGLE REMARK 200 WAVELENGTH PROTOCOL, CRYSATL 2 MAD PROTOCOL REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-HCL, PEG 400, SODIUM ACETATE, REMARK 280 SODIUM CADMIUM, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.84000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.68700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.68700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 64.26000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.68700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.68700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 21.42000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.68700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.68700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 64.26000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.68700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.68700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 21.42000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 42.84000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -119.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 480 O HOH A 480 7555 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 54 -9.58 -59.34 REMARK 500 GLU A 58 75.15 -63.83 REMARK 500 SER A 109 -5.59 -53.18 REMARK 500 ILE A 113 -7.20 -140.14 REMARK 500 ILE A 154 104.81 -37.87 REMARK 500 CYS A 170 59.12 -150.72 REMARK 500 ASP A 173 56.75 -148.13 REMARK 500 LYS A 198 -80.11 -85.39 REMARK 500 SER A 199 -120.18 -64.74 REMARK 500 CYS A 201 23.10 -77.94 REMARK 500 ASN A 204 -7.70 -45.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 301 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 115 NE2 REMARK 620 2 HOH A 526 O 85.7 REMARK 620 3 HIS A 60 NE2 123.0 83.6 REMARK 620 4 HOH A 423 O 102.8 171.2 93.3 REMARK 620 5 HOH A 469 O 134.4 95.9 102.3 76.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 302 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 40 OE1 REMARK 620 2 GLU A 40 OE2 52.2 REMARK 620 3 HOH A 465 O 140.8 98.0 REMARK 620 4 GLU A 40 OE1 104.5 99.0 105.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 303 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 524 O REMARK 620 2 ASP A 175 OD1 85.0 REMARK 620 3 ASP A 175 OD2 84.1 49.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 304 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 13 OE2 REMARK 620 2 GLU A 44 OE1 110.9 REMARK 620 3 GLU A 44 OE2 96.3 47.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 305 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 7 OE1 REMARK 620 2 GLU A 7 OE2 47.2 REMARK 620 3 GLU A 17 OE2 124.3 151.1 REMARK 620 4 HOH A 455 O 133.2 123.3 83.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 306 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 173 OD1 REMARK 620 2 HOH A 518 O 77.0 REMARK 620 3 ASP A 173 OD2 51.9 72.0 REMARK 620 4 HOH A 435 O 109.0 93.0 157.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 307 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 424 O REMARK 620 2 HOH A 488 O 54.7 REMARK 620 3 HIS A 94 ND1 84.3 135.2 REMARK 620 4 HIS A 91 ND1 115.5 105.6 108.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 308 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 193 OD1 REMARK 620 2 ASP A 193 OD2 49.4 REMARK 620 3 HOH A 437 O 114.1 143.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 309 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 1 O REMARK 620 2 ASP A 5 OD1 69.7 REMARK 620 3 ASP A 5 OD2 75.9 51.0 REMARK 620 4 GLU A 188 OE1 102.3 95.2 145.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 309 DBREF 1WVR A 1 221 UNP Q8JI39 CRVP_TRIFL 20 240 SEQRES 1 A 221 ASN VAL ASP PHE ASP SER GLU SER PRO ARG LYS PRO GLU SEQRES 2 A 221 ILE GLN ASN GLU ILE ILE ASP LEU HIS ASN SER LEU ARG SEQRES 3 A 221 ARG SER VAL ASN PRO THR ALA SER ASN MET LEU LYS MET SEQRES 4 A 221 GLU TRP TYR PRO GLU ALA ALA ALA ASN ALA GLU ARG TRP SEQRES 5 A 221 ALA TYR ARG CYS ILE GLU SER HIS SER SER ARG ASP SER SEQRES 6 A 221 ARG VAL ILE GLY GLY ILE LYS CYS GLY GLU ASN ILE TYR SEQRES 7 A 221 MET ALA THR TYR PRO ALA LYS TRP THR ASP ILE ILE HIS SEQRES 8 A 221 ALA TRP HIS GLY GLU TYR LYS ASP PHE LYS TYR GLY VAL SEQRES 9 A 221 GLY ALA VAL PRO SER ASP ALA VAL ILE GLY HIS TYR THR SEQRES 10 A 221 GLN ILE VAL TRP TYR LYS SER TYR ARG ALA GLY CYS ALA SEQRES 11 A 221 ALA ALA TYR CYS PRO SER SER LYS TYR SER TYR PHE TYR SEQRES 12 A 221 VAL CYS GLN TYR CYS PRO ALA GLY ASN ILE ILE GLY LYS SEQRES 13 A 221 THR ALA THR PRO TYR LYS SER GLY PRO PRO CYS GLY ASP SEQRES 14 A 221 CYS PRO SER ASP CYS ASP ASN GLY LEU CYS THR ASN PRO SEQRES 15 A 221 CYS THR ARG GLU ASN GLU PHE THR ASN CYS ASP SER LEU SEQRES 16 A 221 VAL GLN LYS SER SER CYS GLN ASP ASN TYR MET LYS SER SEQRES 17 A 221 LYS CYS PRO ALA SER CYS PHE CYS GLN ASN LYS ILE ILE HET CD A 301 1 HET CD A 302 1 HET CD A 303 1 HET CD A 304 1 HET CD A 305 1 HET CD A 306 1 HET CD A 307 1 HET CD A 308 1 HET CD A 309 1 HETNAM CD CADMIUM ION FORMUL 2 CD 9(CD 2+) FORMUL 11 HOH *140(H2 O) HELIX 1 1 ASN A 1 GLU A 7 1 7 HELIX 2 2 LYS A 11 ARG A 27 1 17 HELIX 3 3 TYR A 42 TYR A 54 1 13 HELIX 4 4 SER A 62 SER A 65 5 4 HELIX 5 5 LYS A 85 GLY A 95 1 11 HELIX 6 6 GLU A 96 LYS A 98 5 3 HELIX 7 7 ILE A 113 VAL A 120 1 8 HELIX 8 8 ASN A 191 SER A 199 1 9 HELIX 9 9 ASP A 203 CYS A 210 1 8 HELIX 10 10 CYS A 210 CYS A 216 1 7 SHEET 1 A 4 GLU A 40 TRP A 41 0 SHEET 2 A 4 ARG A 126 TYR A 133 1 O ALA A 127 N GLU A 40 SHEET 3 A 4 TYR A 141 CYS A 148 -1 O PHE A 142 N ALA A 132 SHEET 4 A 4 GLY A 74 ALA A 80 -1 N TYR A 78 O TYR A 143 SHEET 1 B 2 VAL A 67 ILE A 68 0 SHEET 2 B 2 ILE A 71 LYS A 72 -1 O ILE A 71 N ILE A 68 SHEET 1 C 2 PHE A 100 LYS A 101 0 SHEET 2 C 2 GLY A 105 ALA A 106 -1 O GLY A 105 N LYS A 101 SHEET 1 D 2 CYS A 174 ASP A 175 0 SHEET 2 D 2 LEU A 178 CYS A 179 -1 O LEU A 178 N ASP A 175 SSBOND 1 CYS A 56 CYS A 134 1555 1555 2.04 SSBOND 2 CYS A 73 CYS A 148 1555 1555 2.04 SSBOND 3 CYS A 129 CYS A 145 1555 1555 2.05 SSBOND 4 CYS A 167 CYS A 174 1555 1555 2.03 SSBOND 5 CYS A 170 CYS A 179 1555 1555 2.03 SSBOND 6 CYS A 183 CYS A 216 1555 1555 2.04 SSBOND 7 CYS A 192 CYS A 210 1555 1555 2.03 SSBOND 8 CYS A 201 CYS A 214 1555 1555 2.03 LINK CD CD A 301 NE2 HIS A 115 1555 1555 2.11 LINK CD CD A 301 O HOH A 526 1555 1555 2.68 LINK CD CD A 301 NE2 HIS A 60 1555 1555 2.10 LINK CD CD A 301 O HOH A 423 1555 1555 2.75 LINK CD CD A 301 O HOH A 469 1555 1555 3.09 LINK CD CD A 302 OE1 GLU A 40 1555 1555 2.57 LINK CD CD A 302 OE2 GLU A 40 1555 1555 2.38 LINK CD CD A 302 O HOH A 465 1555 1555 2.11 LINK CD CD A 303 O HOH A 524 1555 1555 1.96 LINK CD CD A 303 OD1 ASP A 175 1555 1555 2.71 LINK CD CD A 303 OD2 ASP A 175 1555 1555 2.55 LINK CD CD A 304 OE2 GLU A 13 1555 1555 2.60 LINK CD CD A 305 OE1 GLU A 7 1555 1555 2.87 LINK CD CD A 305 OE2 GLU A 7 1555 1555 2.53 LINK CD CD A 305 OE2 GLU A 17 1555 1555 2.24 LINK CD CD A 305 O HOH A 455 1555 1555 2.89 LINK CD CD A 306 OD1 ASP A 173 1555 1555 2.38 LINK CD CD A 306 O HOH A 518 1555 1555 2.42 LINK CD CD A 306 OD2 ASP A 173 1555 1555 2.65 LINK CD CD A 307 O HOH A 424 1555 1555 2.71 LINK CD CD A 307 O HOH A 488 1555 1555 3.00 LINK CD CD A 307 ND1 HIS A 94 1555 1555 3.00 LINK CD CD A 307 ND1 HIS A 91 1555 1555 2.33 LINK CD CD A 308 OD1 ASP A 193 1555 1555 2.03 LINK CD CD A 308 OD2 ASP A 193 1555 1555 2.89 LINK CD CD A 308 O HOH A 437 1555 1555 2.40 LINK CD CD A 309 O ASN A 1 1555 1555 2.83 LINK CD CD A 309 OD1 ASP A 5 1555 1555 2.54 LINK CD CD A 309 OD2 ASP A 5 1555 1555 2.56 LINK CD CD A 302 OE1 GLU A 40 1555 7555 2.24 LINK CD CD A 304 OE1 GLU A 44 1555 7555 2.57 LINK CD CD A 304 OE2 GLU A 44 1555 7555 2.89 LINK CD CD A 306 O HOH A 435 1555 7555 2.79 LINK CD CD A 309 OE1 GLU A 188 1555 6455 2.47 CISPEP 1 ASN A 30 PRO A 31 0 0.11 CISPEP 2 VAL A 107 PRO A 108 0 0.08 CISPEP 3 CYS A 148 PRO A 149 0 -0.64 SITE 1 AC1 5 HIS A 60 HIS A 115 HOH A 423 HOH A 469 SITE 2 AC1 5 HOH A 526 SITE 1 AC2 2 GLU A 40 HOH A 465 SITE 1 AC3 2 ASP A 175 HOH A 524 SITE 1 AC4 2 GLU A 13 GLU A 44 SITE 1 AC5 3 GLU A 7 GLU A 17 HOH A 455 SITE 1 AC6 5 ASP A 173 ASN A 218 LYS A 219 HOH A 435 SITE 2 AC6 5 HOH A 518 SITE 1 AC7 4 HIS A 91 HIS A 94 HOH A 424 HOH A 488 SITE 1 AC8 2 ASP A 193 HOH A 437 SITE 1 AC9 3 ASN A 1 ASP A 5 GLU A 188 CRYST1 83.374 83.374 85.680 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011994 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011994 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011671 0.00000