HEADER TRANSFERASE 28-DEC-04 1WVZ TITLE SOLUTION STRUCTURE OF THE D2 DOMAIN OF THE FIBROBLAST GROWTH FACTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBROBLAST GROWTH FACTOR RECEPTOR 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: D2 DOMAIN; COMPND 5 SYNONYM: FGFR-2, KERATINOCYTE GROWTH FACTOR RECEPTOR 2; COMPND 6 EC: 2.7.1.112 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS FIBROBLAST GROWTH FACTOR RECEPTOR, HEPARIN, TUMOR, ANGIOGENESIS, KEYWDS 2 TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 MDLTYP MINIMIZED AVERAGE AUTHOR K.W.HUNG,T.K.S.KUMAR,C.YU REVDAT 3 02-MAR-22 1WVZ 1 REMARK SEQADV REVDAT 2 24-FEB-09 1WVZ 1 VERSN REVDAT 1 28-DEC-05 1WVZ 0 JRNL AUTH K.W.HUNG,T.K.S.KUMAR,C.YU JRNL TITL SOLUTION STRUCTURE OF THE D2 DOMAIN OF THE FIBROBLAST GROWTH JRNL TITL 2 FACTOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 3.1, CNS 3.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE,SIMONSON, REMARK 3 WARREN (CNS), BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE, REMARK 3 JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 975 ARE NOE-DERIVED DISTANCE CONSTRAINTS, 157 DIHEDRAL ANGLE REMARK 3 RESRAINTS, 39 DISTANCE RESTRAINTS FROM HYDROGEN BONDS REMARK 4 REMARK 4 1WVZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1000024067. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 20MM PHOSPHATE BUFFER CONTAINING REMARK 210 20MM NACL AND 50MM AMMONIUM REMARK 210 SULFATE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM FIBROBLAST GROWTH FACTOR REMARK 210 RECEPTOR, U-15N, 13C; 20MM REMARK 210 PHOSPHATE BUFFER (PH 6.5) REMARK 210 CONTAINING 20MM NACL, 50MM REMARK 210 AMMONIUM SULFATE; 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 20 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 SER A 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H LYS A 48 O LYS A 51 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 5 -147.00 -126.92 REMARK 500 1 ALA A 8 128.95 -36.30 REMARK 500 1 GLU A 18 43.48 178.20 REMARK 500 1 LYS A 19 -35.98 -171.96 REMARK 500 1 ARG A 20 -92.37 -65.27 REMARK 500 1 CYS A 34 57.16 -155.64 REMARK 500 1 ILE A 59 95.02 -68.50 REMARK 500 1 ASN A 66 -79.67 60.44 REMARK 500 1 GLN A 67 -41.80 -162.30 REMARK 500 1 TRP A 69 -74.32 88.36 REMARK 500 2 ASN A 5 -145.10 -118.94 REMARK 500 2 ALA A 8 119.23 -34.80 REMARK 500 2 GLU A 18 34.57 179.10 REMARK 500 2 LYS A 19 -41.15 -156.31 REMARK 500 2 CYS A 34 50.61 -152.46 REMARK 500 2 ILE A 59 94.59 -65.56 REMARK 500 2 ASN A 66 -90.11 47.56 REMARK 500 2 GLN A 67 33.93 -177.53 REMARK 500 2 HIS A 68 71.39 169.87 REMARK 500 2 TRP A 69 -84.82 -167.56 REMARK 500 3 ALA A 8 112.37 -33.16 REMARK 500 3 THR A 12 -66.34 -96.78 REMARK 500 3 GLU A 18 51.33 177.96 REMARK 500 3 LYS A 19 -43.67 -147.39 REMARK 500 3 CYS A 34 50.36 -155.58 REMARK 500 3 GLN A 67 16.10 -147.55 REMARK 500 3 TRP A 69 -84.68 -109.42 REMARK 500 4 ASN A 5 -146.07 -124.31 REMARK 500 4 ALA A 8 126.89 -35.13 REMARK 500 4 GLU A 18 34.33 -177.04 REMARK 500 4 LYS A 19 -34.10 -160.76 REMARK 500 4 ARG A 20 40.64 -87.08 REMARK 500 4 CYS A 34 57.60 -155.90 REMARK 500 4 MET A 41 75.24 -117.46 REMARK 500 4 GLN A 67 24.65 -160.50 REMARK 500 4 TRP A 69 -67.72 -120.78 REMARK 500 5 ASN A 5 -147.71 -126.52 REMARK 500 5 ALA A 8 129.72 -36.62 REMARK 500 5 THR A 12 -63.74 -96.97 REMARK 500 5 LYS A 19 60.78 -171.82 REMARK 500 5 ARG A 20 -69.21 -94.52 REMARK 500 5 CYS A 34 67.28 -150.84 REMARK 500 5 ASN A 66 -104.95 41.01 REMARK 500 5 GLN A 67 12.00 -148.92 REMARK 500 5 HIS A 68 104.01 174.60 REMARK 500 5 TRP A 69 -80.93 167.04 REMARK 500 6 ASN A 5 175.91 84.74 REMARK 500 6 ALA A 8 106.03 -38.58 REMARK 500 6 GLU A 18 42.77 174.60 REMARK 500 6 LYS A 19 -45.21 -142.71 REMARK 500 REMARK 500 THIS ENTRY HAS 201 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1WVZ A 2 104 UNP Q9UQH9 FGR2_HUMAN 147 249 SEQADV 1WVZ MET A 1 UNP Q9UQH9 INITIATING METHIONINE SEQRES 1 A 104 MET ASN SER ASN ASN LYS ARG ALA PRO TYR TRP THR ASN SEQRES 2 A 104 THR GLU LYS MET GLU LYS ARG LEU HIS ALA VAL PRO ALA SEQRES 3 A 104 ALA ASN THR VAL LYS PHE ARG CYS PRO ALA GLY GLY ASN SEQRES 4 A 104 PRO MET PRO THR MET ARG TRP LEU LYS ASN GLY LYS GLU SEQRES 5 A 104 PHE LYS GLN GLU HIS ARG ILE GLY GLY TYR LYS VAL ARG SEQRES 6 A 104 ASN GLN HIS TRP SER LEU ILE MET GLU SER VAL VAL PRO SEQRES 7 A 104 SER ASP LYS GLY ASN TYR THR CYS VAL VAL GLU ASN GLU SEQRES 8 A 104 TYR GLY SER ILE ASN HIS THR TYR HIS LEU ASP VAL VAL HELIX 1 1 THR A 14 GLU A 18 5 5 HELIX 2 2 VAL A 77 LYS A 81 5 5 SHEET 1 A 2 TYR A 10 TRP A 11 0 SHEET 2 A 2 ALA A 36 GLY A 37 -1 O GLY A 37 N TYR A 10 SHEET 1 B 5 HIS A 22 PRO A 25 0 SHEET 2 B 5 HIS A 97 VAL A 104 1 O ASP A 102 N VAL A 24 SHEET 3 B 5 ASN A 83 ASN A 90 -1 N TYR A 84 O TYR A 99 SHEET 4 B 5 THR A 43 LYS A 48 -1 N ARG A 45 O VAL A 87 SHEET 5 B 5 LYS A 51 GLU A 52 -1 O LYS A 51 N LYS A 48 SHEET 1 C 4 HIS A 22 PRO A 25 0 SHEET 2 C 4 HIS A 97 VAL A 104 1 O ASP A 102 N VAL A 24 SHEET 3 C 4 ASN A 83 ASN A 90 -1 N TYR A 84 O TYR A 99 SHEET 4 C 4 GLY A 93 SER A 94 -1 O GLY A 93 N ASN A 90 SHEET 1 D 3 ASN A 28 CYS A 34 0 SHEET 2 D 3 TRP A 69 SER A 75 -1 O MET A 73 N VAL A 30 SHEET 3 D 3 TYR A 62 VAL A 64 -1 N LYS A 63 O ILE A 72 SSBOND 1 CYS A 34 CYS A 86 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1