data_1WWP # _entry.id 1WWP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1WWP RCSB RCSB024090 WWPDB D_1000024090 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id ttk003001694.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1WWP _pdbx_database_status.recvd_initial_deposition_date 2005-01-12 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wang, H.' 1 'Murayama, K.' 2 'Terada, T.' 3 'Shirouzu, M.' 4 'Kuramitsu, S.' 5 'Yokoyama, S.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title 'Crystal structure of ttk003001694 from Thermus Thermophilus HB8' _citation.journal_abbrev 'TO BE PUBLISHED' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Wang, H.' 1 primary 'Murayama, K.' 2 primary 'Terada, T.' 3 primary 'Shirouzu, M.' 4 primary 'Kuramitsu, S.' 5 primary 'Yokoyama, S.' 6 # _cell.entry_id 1WWP _cell.length_a 74.380 _cell.length_b 61.420 _cell.length_c 60.780 _cell.angle_alpha 90.00 _cell.angle_beta 122.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WWP _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'hypothetical protein TTHA0636' 13867.496 2 ? ? ? ? 2 water nat water 18.015 58 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)AEKALATLKELAFLEDPSPVERDAAIQRFEYTFEAFWKALQAYLREKEGLEGASPKGVIRLAREVGLLRDEEARL ALG(MSE)VDDRSLTVHTYNEPLARAIFRRLPDYARL(MSE)EQVLGRLRR ; _entity_poly.pdbx_seq_one_letter_code_can ;MAEKALATLKELAFLEDPSPVERDAAIQRFEYTFEAFWKALQAYLREKEGLEGASPKGVIRLAREVGLLRDEEARLALGM VDDRSLTVHTYNEPLARAIFRRLPDYARLMEQVLGRLRR ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ttk003001694.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 ALA n 1 3 GLU n 1 4 LYS n 1 5 ALA n 1 6 LEU n 1 7 ALA n 1 8 THR n 1 9 LEU n 1 10 LYS n 1 11 GLU n 1 12 LEU n 1 13 ALA n 1 14 PHE n 1 15 LEU n 1 16 GLU n 1 17 ASP n 1 18 PRO n 1 19 SER n 1 20 PRO n 1 21 VAL n 1 22 GLU n 1 23 ARG n 1 24 ASP n 1 25 ALA n 1 26 ALA n 1 27 ILE n 1 28 GLN n 1 29 ARG n 1 30 PHE n 1 31 GLU n 1 32 TYR n 1 33 THR n 1 34 PHE n 1 35 GLU n 1 36 ALA n 1 37 PHE n 1 38 TRP n 1 39 LYS n 1 40 ALA n 1 41 LEU n 1 42 GLN n 1 43 ALA n 1 44 TYR n 1 45 LEU n 1 46 ARG n 1 47 GLU n 1 48 LYS n 1 49 GLU n 1 50 GLY n 1 51 LEU n 1 52 GLU n 1 53 GLY n 1 54 ALA n 1 55 SER n 1 56 PRO n 1 57 LYS n 1 58 GLY n 1 59 VAL n 1 60 ILE n 1 61 ARG n 1 62 LEU n 1 63 ALA n 1 64 ARG n 1 65 GLU n 1 66 VAL n 1 67 GLY n 1 68 LEU n 1 69 LEU n 1 70 ARG n 1 71 ASP n 1 72 GLU n 1 73 GLU n 1 74 ALA n 1 75 ARG n 1 76 LEU n 1 77 ALA n 1 78 LEU n 1 79 GLY n 1 80 MSE n 1 81 VAL n 1 82 ASP n 1 83 ASP n 1 84 ARG n 1 85 SER n 1 86 LEU n 1 87 THR n 1 88 VAL n 1 89 HIS n 1 90 THR n 1 91 TYR n 1 92 ASN n 1 93 GLU n 1 94 PRO n 1 95 LEU n 1 96 ALA n 1 97 ARG n 1 98 ALA n 1 99 ILE n 1 100 PHE n 1 101 ARG n 1 102 ARG n 1 103 LEU n 1 104 PRO n 1 105 ASP n 1 106 TYR n 1 107 ALA n 1 108 ARG n 1 109 LEU n 1 110 MSE n 1 111 GLU n 1 112 GLN n 1 113 VAL n 1 114 LEU n 1 115 GLY n 1 116 ARG n 1 117 LEU n 1 118 ARG n 1 119 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species 'Thermus thermophilus' _entity_src_gen.gene_src_strain 'HB8 / ATCC 27634 / DSM 579' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermus thermophilus HB8' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 300852 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5SKK7_THET8 _struct_ref.pdbx_db_accession Q5SKK7 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MAEKALATLKELAFLEDPSPVERDAAIQRFEYTFEAFWKALQAYLREKEGLEGASPKGVIRLAREVGLLRDEEARLALGM VDDRSLTVHTYNEPLARAIFRRLPDYARLMEQVLGRLRR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1WWP A 1 ? 119 ? Q5SKK7 1 ? 119 ? 1 119 2 1 1WWP B 1 ? 119 ? Q5SKK7 1 ? 119 ? 1 119 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1WWP MSE A 1 ? UNP Q5SKK7 MET 1 'MODIFIED RESIDUE' 1 1 1 1WWP MSE A 80 ? UNP Q5SKK7 MET 80 'MODIFIED RESIDUE' 80 2 1 1WWP MSE A 110 ? UNP Q5SKK7 MET 110 'MODIFIED RESIDUE' 110 3 2 1WWP MSE B 1 ? UNP Q5SKK7 MET 1 'MODIFIED RESIDUE' 1 4 2 1WWP MSE B 80 ? UNP Q5SKK7 MET 80 'MODIFIED RESIDUE' 80 5 2 1WWP MSE B 110 ? UNP Q5SKK7 MET 110 'MODIFIED RESIDUE' 110 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1WWP _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.2 _exptl_crystal.density_percent_sol 43 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details 'PEG6000, Lithium Chloride, MES, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU JUPITER 210' _diffrn_detector.pdbx_collection_date 2004-11-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9600 1.0 2 0.9790 1.0 3 0.9793 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL26B1' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL26B1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9600, 0.9790, 0.9793' # _reflns.entry_id 1WWP _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.1 _reflns.number_obs 13063 _reflns.number_all ? _reflns.percent_possible_obs 97.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.073 _reflns.pdbx_netI_over_sigmaI 13.5 _reflns.B_iso_Wilson_estimate 24.7 _reflns.pdbx_redundancy 4.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.18 _reflns_shell.percent_possible_all 92.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.146 _reflns_shell.meanI_over_sigI_obs 5.9 _reflns_shell.pdbx_redundancy 3.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1234 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1WWP _refine.ls_number_reflns_obs 12924 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1068062.80 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 44.01 _refine.ls_d_res_high 2.11 _refine.ls_percent_reflns_obs 96.0 _refine.ls_R_factor_obs 0.217 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.217 _refine.ls_R_factor_R_free 0.27 _refine.ls_R_factor_R_free_error 0.007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.3 _refine.ls_number_reflns_R_free 1336 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 47.3 _refine.aniso_B[1][1] -3.20 _refine.aniso_B[2][2] 8.16 _refine.aniso_B[3][3] -4.96 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 5.11 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.361452 _refine.solvent_model_param_bsol 51.0133 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1WWP _refine_analyze.Luzzati_coordinate_error_obs 0.26 _refine_analyze.Luzzati_sigma_a_obs 0.21 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.34 _refine_analyze.Luzzati_sigma_a_free 0.26 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1932 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 58 _refine_hist.number_atoms_total 1990 _refine_hist.d_res_high 2.11 _refine_hist.d_res_low 44.01 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 18.6 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.97 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.10 _refine_ls_shell.d_res_low 2.23 _refine_ls_shell.number_reflns_R_work 1616 _refine_ls_shell.R_factor_R_work 0.272 _refine_ls_shell.percent_reflns_obs 80.0 _refine_ls_shell.R_factor_R_free 0.299 _refine_ls_shell.R_factor_R_free_error 0.022 _refine_ls_shell.percent_reflns_R_free 10.2 _refine_ls_shell.number_reflns_R_free 183 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM ? 'X-RAY DIFFRACTION' # _struct.entry_id 1WWP _struct.title 'Crystal structure of ttk003001694 from Thermus Thermophilus HB8' _struct.pdbx_descriptor 'hypothetical protein TTHA0636' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1WWP _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION, RIKEN Structural Genomics/Proteomics Initiative, RSGI' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 MSE A 1 ? PHE A 14 ? MSE A 1 PHE A 14 1 ? 14 HELX_P HELX_P2 2 SER A 19 ? LYS A 48 ? SER A 19 LYS A 48 1 ? 30 HELX_P HELX_P3 3 SER A 55 ? VAL A 66 ? SER A 55 VAL A 66 1 ? 12 HELX_P HELX_P4 4 ARG A 70 ? THR A 87 ? ARG A 70 THR A 87 1 ? 18 HELX_P HELX_P5 5 VAL A 88 ? THR A 90 ? VAL A 88 THR A 90 5 ? 3 HELX_P HELX_P6 6 ASN A 92 ? LEU A 117 ? ASN A 92 LEU A 117 1 ? 26 HELX_P HELX_P7 7 MSE B 1 ? PHE B 14 ? MSE B 1 PHE B 14 1 ? 14 HELX_P HELX_P8 8 SER B 19 ? GLY B 50 ? SER B 19 GLY B 50 1 ? 32 HELX_P HELX_P9 9 SER B 55 ? GLU B 65 ? SER B 55 GLU B 65 1 ? 11 HELX_P HELX_P10 10 ARG B 70 ? THR B 87 ? ARG B 70 THR B 87 1 ? 18 HELX_P HELX_P11 11 ASN B 92 ? LEU B 117 ? ASN B 92 LEU B 117 1 ? 26 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 1 C ? ? ? 1_555 A ALA 2 N ? ? A MSE 1 A ALA 2 1_555 ? ? ? ? ? ? ? 1.331 ? covale2 covale ? ? A GLY 79 C ? ? ? 1_555 A MSE 80 N ? ? A GLY 79 A MSE 80 1_555 ? ? ? ? ? ? ? 1.328 ? covale3 covale ? ? A MSE 80 C ? ? ? 1_555 A VAL 81 N ? ? A MSE 80 A VAL 81 1_555 ? ? ? ? ? ? ? 1.331 ? covale4 covale ? ? A LEU 109 C ? ? ? 1_555 A MSE 110 N ? ? A LEU 109 A MSE 110 1_555 ? ? ? ? ? ? ? 1.329 ? covale5 covale ? ? A MSE 110 C ? ? ? 1_555 A GLU 111 N ? ? A MSE 110 A GLU 111 1_555 ? ? ? ? ? ? ? 1.329 ? covale6 covale ? ? B MSE 1 C ? ? ? 1_555 B ALA 2 N ? ? B MSE 1 B ALA 2 1_555 ? ? ? ? ? ? ? 1.339 ? covale7 covale ? ? B GLY 79 C ? ? ? 1_555 B MSE 80 N ? ? B GLY 79 B MSE 80 1_555 ? ? ? ? ? ? ? 1.332 ? covale8 covale ? ? B MSE 80 C ? ? ? 1_555 B VAL 81 N ? ? B MSE 80 B VAL 81 1_555 ? ? ? ? ? ? ? 1.331 ? covale9 covale ? ? B LEU 109 C ? ? ? 1_555 B MSE 110 N ? ? B LEU 109 B MSE 110 1_555 ? ? ? ? ? ? ? 1.327 ? covale10 covale ? ? B MSE 110 C ? ? ? 1_555 B GLU 111 N ? ? B MSE 110 B GLU 111 1_555 ? ? ? ? ? ? ? 1.336 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1WWP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1WWP _atom_sites.fract_transf_matrix[1][1] 0.013444 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.008401 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016281 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019401 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 1 MSE MSE A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 GLU 3 3 3 GLU GLU A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 PHE 14 14 14 PHE PHE A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 SER 19 19 19 SER SER A . n A 1 20 PRO 20 20 20 PRO PRO A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 ARG 23 23 23 ARG ARG A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 ILE 27 27 27 ILE ILE A . n A 1 28 GLN 28 28 28 GLN GLN A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 PHE 30 30 30 PHE PHE A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 TYR 32 32 32 TYR TYR A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 PHE 34 34 34 PHE PHE A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 PHE 37 37 37 PHE PHE A . n A 1 38 TRP 38 38 38 TRP TRP A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 GLN 42 42 42 GLN GLN A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 TYR 44 44 44 TYR TYR A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 ARG 46 46 46 ARG ARG A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 PRO 56 56 56 PRO PRO A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 ILE 60 60 60 ILE ILE A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 ARG 64 64 64 ARG ARG A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 ARG 70 70 70 ARG ARG A . n A 1 71 ASP 71 71 71 ASP ASP A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 ARG 75 75 75 ARG ARG A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 MSE 80 80 80 MSE MSE A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 ASP 82 82 82 ASP ASP A . n A 1 83 ASP 83 83 83 ASP ASP A . n A 1 84 ARG 84 84 84 ARG ARG A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 THR 87 87 87 THR THR A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 HIS 89 89 89 HIS HIS A . n A 1 90 THR 90 90 90 THR THR A . n A 1 91 TYR 91 91 91 TYR TYR A . n A 1 92 ASN 92 92 92 ASN ASN A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 PRO 94 94 94 PRO PRO A . n A 1 95 LEU 95 95 95 LEU LEU A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 ARG 97 97 97 ARG ARG A . n A 1 98 ALA 98 98 98 ALA ALA A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 PHE 100 100 100 PHE PHE A . n A 1 101 ARG 101 101 101 ARG ARG A . n A 1 102 ARG 102 102 102 ARG ARG A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 PRO 104 104 104 PRO PRO A . n A 1 105 ASP 105 105 105 ASP ASP A . n A 1 106 TYR 106 106 106 TYR TYR A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 ARG 108 108 108 ARG ARG A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 MSE 110 110 110 MSE MSE A . n A 1 111 GLU 111 111 111 GLU GLU A . n A 1 112 GLN 112 112 112 GLN GLN A . n A 1 113 VAL 113 113 113 VAL VAL A . n A 1 114 LEU 114 114 114 LEU LEU A . n A 1 115 GLY 115 115 115 GLY GLY A . n A 1 116 ARG 116 116 116 ARG ARG A . n A 1 117 LEU 117 117 117 LEU LEU A . n A 1 118 ARG 118 118 118 ARG ARG A . n A 1 119 ARG 119 119 119 ARG ARG A . n B 1 1 MSE 1 1 1 MSE MSE B . n B 1 2 ALA 2 2 2 ALA ALA B . n B 1 3 GLU 3 3 3 GLU GLU B . n B 1 4 LYS 4 4 4 LYS LYS B . n B 1 5 ALA 5 5 5 ALA ALA B . n B 1 6 LEU 6 6 6 LEU LEU B . n B 1 7 ALA 7 7 7 ALA ALA B . n B 1 8 THR 8 8 8 THR THR B . n B 1 9 LEU 9 9 9 LEU LEU B . n B 1 10 LYS 10 10 10 LYS LYS B . n B 1 11 GLU 11 11 11 GLU GLU B . n B 1 12 LEU 12 12 12 LEU LEU B . n B 1 13 ALA 13 13 13 ALA ALA B . n B 1 14 PHE 14 14 14 PHE PHE B . n B 1 15 LEU 15 15 15 LEU LEU B . n B 1 16 GLU 16 16 16 GLU GLU B . n B 1 17 ASP 17 17 17 ASP ASP B . n B 1 18 PRO 18 18 18 PRO PRO B . n B 1 19 SER 19 19 19 SER SER B . n B 1 20 PRO 20 20 20 PRO PRO B . n B 1 21 VAL 21 21 21 VAL VAL B . n B 1 22 GLU 22 22 22 GLU GLU B . n B 1 23 ARG 23 23 23 ARG ARG B . n B 1 24 ASP 24 24 24 ASP ASP B . n B 1 25 ALA 25 25 25 ALA ALA B . n B 1 26 ALA 26 26 26 ALA ALA B . n B 1 27 ILE 27 27 27 ILE ILE B . n B 1 28 GLN 28 28 28 GLN GLN B . n B 1 29 ARG 29 29 29 ARG ARG B . n B 1 30 PHE 30 30 30 PHE PHE B . n B 1 31 GLU 31 31 31 GLU GLU B . n B 1 32 TYR 32 32 32 TYR TYR B . n B 1 33 THR 33 33 33 THR THR B . n B 1 34 PHE 34 34 34 PHE PHE B . n B 1 35 GLU 35 35 35 GLU GLU B . n B 1 36 ALA 36 36 36 ALA ALA B . n B 1 37 PHE 37 37 37 PHE PHE B . n B 1 38 TRP 38 38 38 TRP TRP B . n B 1 39 LYS 39 39 39 LYS LYS B . n B 1 40 ALA 40 40 40 ALA ALA B . n B 1 41 LEU 41 41 41 LEU LEU B . n B 1 42 GLN 42 42 42 GLN GLN B . n B 1 43 ALA 43 43 43 ALA ALA B . n B 1 44 TYR 44 44 44 TYR TYR B . n B 1 45 LEU 45 45 45 LEU LEU B . n B 1 46 ARG 46 46 46 ARG ARG B . n B 1 47 GLU 47 47 47 GLU GLU B . n B 1 48 LYS 48 48 48 LYS LYS B . n B 1 49 GLU 49 49 49 GLU GLU B . n B 1 50 GLY 50 50 50 GLY GLY B . n B 1 51 LEU 51 51 51 LEU LEU B . n B 1 52 GLU 52 52 52 GLU GLU B . n B 1 53 GLY 53 53 53 GLY GLY B . n B 1 54 ALA 54 54 54 ALA ALA B . n B 1 55 SER 55 55 55 SER SER B . n B 1 56 PRO 56 56 56 PRO PRO B . n B 1 57 LYS 57 57 57 LYS LYS B . n B 1 58 GLY 58 58 58 GLY GLY B . n B 1 59 VAL 59 59 59 VAL VAL B . n B 1 60 ILE 60 60 60 ILE ILE B . n B 1 61 ARG 61 61 61 ARG ARG B . n B 1 62 LEU 62 62 62 LEU LEU B . n B 1 63 ALA 63 63 63 ALA ALA B . n B 1 64 ARG 64 64 64 ARG ARG B . n B 1 65 GLU 65 65 65 GLU GLU B . n B 1 66 VAL 66 66 66 VAL VAL B . n B 1 67 GLY 67 67 67 GLY GLY B . n B 1 68 LEU 68 68 68 LEU LEU B . n B 1 69 LEU 69 69 69 LEU LEU B . n B 1 70 ARG 70 70 70 ARG ARG B . n B 1 71 ASP 71 71 71 ASP ASP B . n B 1 72 GLU 72 72 72 GLU GLU B . n B 1 73 GLU 73 73 73 GLU GLU B . n B 1 74 ALA 74 74 74 ALA ALA B . n B 1 75 ARG 75 75 75 ARG ARG B . n B 1 76 LEU 76 76 76 LEU LEU B . n B 1 77 ALA 77 77 77 ALA ALA B . n B 1 78 LEU 78 78 78 LEU LEU B . n B 1 79 GLY 79 79 79 GLY GLY B . n B 1 80 MSE 80 80 80 MSE MSE B . n B 1 81 VAL 81 81 81 VAL VAL B . n B 1 82 ASP 82 82 82 ASP ASP B . n B 1 83 ASP 83 83 83 ASP ASP B . n B 1 84 ARG 84 84 84 ARG ARG B . n B 1 85 SER 85 85 85 SER SER B . n B 1 86 LEU 86 86 86 LEU LEU B . n B 1 87 THR 87 87 87 THR THR B . n B 1 88 VAL 88 88 88 VAL VAL B . n B 1 89 HIS 89 89 89 HIS HIS B . n B 1 90 THR 90 90 90 THR THR B . n B 1 91 TYR 91 91 91 TYR TYR B . n B 1 92 ASN 92 92 92 ASN ASN B . n B 1 93 GLU 93 93 93 GLU GLU B . n B 1 94 PRO 94 94 94 PRO PRO B . n B 1 95 LEU 95 95 95 LEU LEU B . n B 1 96 ALA 96 96 96 ALA ALA B . n B 1 97 ARG 97 97 97 ARG ARG B . n B 1 98 ALA 98 98 98 ALA ALA B . n B 1 99 ILE 99 99 99 ILE ILE B . n B 1 100 PHE 100 100 100 PHE PHE B . n B 1 101 ARG 101 101 101 ARG ARG B . n B 1 102 ARG 102 102 102 ARG ARG B . n B 1 103 LEU 103 103 103 LEU LEU B . n B 1 104 PRO 104 104 104 PRO PRO B . n B 1 105 ASP 105 105 105 ASP ASP B . n B 1 106 TYR 106 106 106 TYR TYR B . n B 1 107 ALA 107 107 107 ALA ALA B . n B 1 108 ARG 108 108 108 ARG ARG B . n B 1 109 LEU 109 109 109 LEU LEU B . n B 1 110 MSE 110 110 110 MSE MSE B . n B 1 111 GLU 111 111 111 GLU GLU B . n B 1 112 GLN 112 112 112 GLN GLN B . n B 1 113 VAL 113 113 113 VAL VAL B . n B 1 114 LEU 114 114 114 LEU LEU B . n B 1 115 GLY 115 115 115 GLY GLY B . n B 1 116 ARG 116 116 116 ARG ARG B . n B 1 117 LEU 117 117 117 LEU LEU B . n B 1 118 ARG 118 118 118 ARG ARG B . n B 1 119 ARG 119 119 119 ARG ARG B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 120 6 HOH HOH A . C 2 HOH 2 121 9 HOH HOH A . C 2 HOH 3 122 17 HOH HOH A . C 2 HOH 4 123 18 HOH HOH A . C 2 HOH 5 124 21 HOH HOH A . C 2 HOH 6 125 22 HOH HOH A . C 2 HOH 7 126 32 HOH HOH A . C 2 HOH 8 127 33 HOH HOH A . C 2 HOH 9 128 38 HOH HOH A . C 2 HOH 10 129 40 HOH HOH A . C 2 HOH 11 130 48 HOH HOH A . C 2 HOH 12 131 53 HOH HOH A . C 2 HOH 13 132 63 HOH HOH A . C 2 HOH 14 133 68 HOH HOH A . C 2 HOH 15 134 70 HOH HOH A . C 2 HOH 16 135 74 HOH HOH A . C 2 HOH 17 136 76 HOH HOH A . C 2 HOH 18 137 77 HOH HOH A . D 2 HOH 1 120 2 HOH HOH B . D 2 HOH 2 121 3 HOH HOH B . D 2 HOH 3 122 4 HOH HOH B . D 2 HOH 4 123 5 HOH HOH B . D 2 HOH 5 124 7 HOH HOH B . D 2 HOH 6 125 8 HOH HOH B . D 2 HOH 7 126 10 HOH HOH B . D 2 HOH 8 127 13 HOH HOH B . D 2 HOH 9 128 14 HOH HOH B . D 2 HOH 10 129 15 HOH HOH B . D 2 HOH 11 130 16 HOH HOH B . D 2 HOH 12 131 19 HOH HOH B . D 2 HOH 13 132 20 HOH HOH B . D 2 HOH 14 133 23 HOH HOH B . D 2 HOH 15 134 24 HOH HOH B . D 2 HOH 16 135 26 HOH HOH B . D 2 HOH 17 136 27 HOH HOH B . D 2 HOH 18 137 28 HOH HOH B . D 2 HOH 19 138 29 HOH HOH B . D 2 HOH 20 139 30 HOH HOH B . D 2 HOH 21 140 31 HOH HOH B . D 2 HOH 22 141 35 HOH HOH B . D 2 HOH 23 142 36 HOH HOH B . D 2 HOH 24 143 37 HOH HOH B . D 2 HOH 25 144 39 HOH HOH B . D 2 HOH 26 145 49 HOH HOH B . D 2 HOH 27 146 51 HOH HOH B . D 2 HOH 28 147 52 HOH HOH B . D 2 HOH 29 148 54 HOH HOH B . D 2 HOH 30 149 57 HOH HOH B . D 2 HOH 31 150 58 HOH HOH B . D 2 HOH 32 151 59 HOH HOH B . D 2 HOH 33 152 60 HOH HOH B . D 2 HOH 34 153 61 HOH HOH B . D 2 HOH 35 154 64 HOH HOH B . D 2 HOH 36 155 65 HOH HOH B . D 2 HOH 37 156 71 HOH HOH B . D 2 HOH 38 157 72 HOH HOH B . D 2 HOH 39 158 73 HOH HOH B . D 2 HOH 40 159 75 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 1 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 80 A MSE 80 ? MET SELENOMETHIONINE 3 A MSE 110 A MSE 110 ? MET SELENOMETHIONINE 4 B MSE 1 B MSE 1 ? MET SELENOMETHIONINE 5 B MSE 80 B MSE 80 ? MET SELENOMETHIONINE 6 B MSE 110 B MSE 110 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1790 ? 1 MORE -9 ? 1 'SSA (A^2)' 11940 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-07-12 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 2 ? ? -29.17 -86.50 2 1 LEU A 117 ? ? -67.18 0.58 3 1 ARG A 118 ? ? -61.78 19.64 4 1 THR B 87 ? ? -68.89 11.31 5 1 VAL B 88 ? ? -81.96 -77.41 6 1 TYR B 91 ? ? -72.26 27.82 7 1 GLU B 93 ? ? -24.76 -52.05 8 1 ARG B 118 ? ? -122.94 -64.99 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #