HEADER APOPTOSIS 18-JAN-05 1WWY TITLE SOLUTION STRUCTURE OF THE DUF1000 DOMAIN OF A THIOREDOXIN-LIKE PROTEIN TITLE 2 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN-LIKE PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DUF1000 DOMAIN; COMPND 5 SYNONYM: 32 KDA THIOREDOXIN-RELATED PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TXNL1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040621-12; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS STRUCTURAL GENOMICS, HYPOTHETICAL PROTEIN, REGULATORY PROTEIN, KEYWDS 2 APOPTOSIS, CANCER, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 3 RSGI EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.K.GORONCY,T.KIGAWA,S.KOSHIBA,N.KOBAYASHI,N.TOCHIO,M.INOUE, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 5 29-MAY-24 1WWY 1 REMARK REVDAT 4 02-MAR-22 1WWY 1 REMARK SEQADV REVDAT 3 02-JUN-10 1WWY 1 JRNL REVDAT 2 24-FEB-09 1WWY 1 VERSN REVDAT 1 18-JUL-05 1WWY 0 JRNL AUTH A.K.GORONCY,S.KOSHIBA,N.TOCHIO,T.TOMIZAWA,M.INOUE,A.TANAKA, JRNL AUTH 2 S.SUGANO,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE C-TERMINAL DUF1000 DOMAIN OF THE JRNL TITL 2 HUMAN THIOREDOXIN-LIKE 1 PROTEIN. JRNL REF PROTEINS V. 78 2176 2010 JRNL REFN ISSN 0887-3585 JRNL PMID 20455272 JRNL DOI 10.1002/PROT.22719 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2 REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), PETER GUENTERT (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WWY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JAN-05. REMARK 100 THE DEPOSITION ID IS D_1000024098. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.02MM DUF1000 DOMAIN, 20MM TRIS REMARK 210 -HCL, 100MM NACL, 1MM D-DTT, REMARK 210 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.896 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -178.96 60.33 REMARK 500 1 CYS A 47 -65.01 -146.23 REMARK 500 1 ASP A 48 -169.76 -179.44 REMARK 500 1 PRO A 71 -170.84 -69.78 REMARK 500 1 LYS A 78 -76.70 -114.78 REMARK 500 1 ARG A 88 -38.82 -179.66 REMARK 500 1 ASP A 91 -169.62 -102.81 REMARK 500 1 GLN A 102 -76.03 -136.29 REMARK 500 1 ALA A 103 114.81 64.62 REMARK 500 1 ASN A 126 95.21 -160.87 REMARK 500 1 GLN A 135 -63.56 -108.20 REMARK 500 1 GLU A 141 170.41 -51.89 REMARK 500 1 GLN A 157 113.90 -165.03 REMARK 500 1 ASP A 163 -172.40 -178.55 REMARK 500 1 PHE A 164 104.20 62.86 REMARK 500 1 SER A 166 173.70 61.05 REMARK 500 2 TYR A 9 -172.15 -60.82 REMARK 500 2 CYS A 47 -67.78 -156.31 REMARK 500 2 PRO A 71 -170.86 -69.79 REMARK 500 2 LYS A 78 -75.05 -119.98 REMARK 500 2 ARG A 88 -73.53 -171.26 REMARK 500 2 ASP A 91 -169.65 -103.35 REMARK 500 2 GLN A 102 -75.20 -137.66 REMARK 500 2 ALA A 103 117.56 65.22 REMARK 500 2 PHE A 124 31.74 -99.54 REMARK 500 2 GLU A 141 171.63 -52.56 REMARK 500 2 GLN A 157 113.54 -164.21 REMARK 500 2 ALA A 158 -75.76 -136.93 REMARK 500 2 THR A 159 -178.26 -171.23 REMARK 500 2 LYS A 165 104.46 63.18 REMARK 500 2 SER A 166 -176.54 57.61 REMARK 500 2 PRO A 168 -175.91 -69.80 REMARK 500 2 SER A 170 -71.63 -81.17 REMARK 500 3 SER A 2 75.62 58.12 REMARK 500 3 SER A 6 104.03 63.02 REMARK 500 3 CYS A 47 -71.56 -140.43 REMARK 500 3 PRO A 71 -170.90 -69.72 REMARK 500 3 LYS A 78 -75.31 -120.23 REMARK 500 3 ARG A 88 -73.22 -171.29 REMARK 500 3 ASP A 91 -169.67 -102.92 REMARK 500 3 GLN A 102 -74.83 -140.21 REMARK 500 3 ALA A 103 117.93 65.32 REMARK 500 3 GLU A 141 171.01 -52.29 REMARK 500 3 ALA A 158 -174.29 -171.84 REMARK 500 3 LYS A 165 99.33 60.45 REMARK 500 3 SER A 169 94.14 58.97 REMARK 500 4 SER A 2 -177.18 58.25 REMARK 500 4 SER A 3 106.47 -173.82 REMARK 500 4 SER A 5 -68.82 -162.19 REMARK 500 4 CYS A 47 -69.46 -169.16 REMARK 500 REMARK 500 THIS ENTRY HAS 356 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001003443.1 RELATED DB: TARGETDB DBREF 1WWY A 8 165 UNP O43396 TXNL1_HUMAN 122 279 SEQADV 1WWY GLY A 1 UNP O43396 CLONING ARTIFACT SEQADV 1WWY SER A 2 UNP O43396 CLONING ARTIFACT SEQADV 1WWY SER A 3 UNP O43396 CLONING ARTIFACT SEQADV 1WWY GLY A 4 UNP O43396 CLONING ARTIFACT SEQADV 1WWY SER A 5 UNP O43396 CLONING ARTIFACT SEQADV 1WWY SER A 6 UNP O43396 CLONING ARTIFACT SEQADV 1WWY GLY A 7 UNP O43396 CLONING ARTIFACT SEQADV 1WWY SER A 166 UNP O43396 CLONING ARTIFACT SEQADV 1WWY GLY A 167 UNP O43396 CLONING ARTIFACT SEQADV 1WWY PRO A 168 UNP O43396 CLONING ARTIFACT SEQADV 1WWY SER A 169 UNP O43396 CLONING ARTIFACT SEQADV 1WWY SER A 170 UNP O43396 CLONING ARTIFACT SEQADV 1WWY GLY A 171 UNP O43396 CLONING ARTIFACT SEQRES 1 A 171 GLY SER SER GLY SER SER GLY GLY TYR MET ASP LEU MET SEQRES 2 A 171 PRO PHE ILE ASN LYS ALA GLY CYS GLU CYS LEU ASN GLU SEQRES 3 A 171 SER ASP GLU HIS GLY PHE ASP ASN CYS LEU ARG LYS ASP SEQRES 4 A 171 THR THR PHE LEU GLU SER ASP CYS ASP GLU GLN LEU LEU SEQRES 5 A 171 ILE THR VAL ALA PHE ASN GLN PRO VAL LYS LEU TYR SER SEQRES 6 A 171 MET LYS PHE GLN GLY PRO ASP ASN GLY GLN GLY PRO LYS SEQRES 7 A 171 TYR VAL LYS ILE PHE ILE ASN LEU PRO ARG SER MET ASP SEQRES 8 A 171 PHE GLU GLU ALA GLU ARG SER GLU PRO THR GLN ALA LEU SEQRES 9 A 171 GLU LEU THR GLU ASP ASP ILE LYS GLU ASP GLY ILE VAL SEQRES 10 A 171 PRO LEU ARG TYR VAL LYS PHE GLN ASN VAL ASN SER VAL SEQRES 11 A 171 THR ILE PHE VAL GLN SER ASN GLN GLY GLU GLU GLU THR SEQRES 12 A 171 THR ARG ILE SER TYR PHE THR PHE ILE GLY THR PRO VAL SEQRES 13 A 171 GLN ALA THR ASN MET ASN ASP PHE LYS SER GLY PRO SER SEQRES 14 A 171 SER GLY HELIX 1 1 LEU A 12 ILE A 16 5 5 HELIX 2 2 GLU A 93 SER A 98 1 6 SHEET 1 A 3 GLU A 22 LEU A 24 0 SHEET 2 A 3 LEU A 52 PHE A 68 -1 O THR A 54 N GLU A 22 SHEET 3 A 3 VAL A 117 PRO A 118 -1 O VAL A 117 N MET A 66 SHEET 1 B 5 LEU A 104 GLU A 105 0 SHEET 2 B 5 TYR A 79 ILE A 84 -1 N VAL A 80 O LEU A 104 SHEET 3 B 5 VAL A 127 VAL A 134 -1 O THR A 131 N PHE A 83 SHEET 4 B 5 LEU A 52 PHE A 68 -1 N ILE A 53 O ILE A 132 SHEET 5 B 5 PHE A 149 PRO A 155 -1 O ILE A 152 N SER A 65 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1