HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 01-FEB-05 1WXS TITLE SOLUTION STRUCTURE OF UFM1, A UBIQUITIN-FOLD MODIFIER COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-FOLD MODIFIER 1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS UBIQUITIN-FOLD, STRUCTURAL GENOMICS, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR H.SASAKAWA,E.SAKATA,Y.YAMAGUCHI,M.KOMATSU,K.TATSUMI,E.KOMINAMI, AUTHOR 2 K.TANAKA,K.KATO REVDAT 3 02-MAR-22 1WXS 1 REMARK SEQADV REVDAT 2 24-FEB-09 1WXS 1 VERSN REVDAT 1 18-APR-06 1WXS 0 JRNL AUTH H.SASAKAWA,E.SAKATA,Y.YAMAGUCHI,M.KOMATSU,K.TATSUMI, JRNL AUTH 2 E.KOMINAMI,K.TANAKA,K.KATO JRNL TITL SOLUTION STRUCTURE AND DYNAMICS OF UFM1, A UBIQUITIN-FOLD JRNL TITL 2 MODIFIER 1 JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 343 21 2006 JRNL REFN ISSN 0006-291X JRNL PMID 16527251 JRNL DOI 10.1016/J.BBRC.2006.02.107 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CYANA 2.0 REMARK 3 AUTHORS : DELAGLIO (NMRPIPE), GUNTERT (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WXS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1000024128. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.1MM UFM1 U-13C,15N; 10MM REMARK 210 PHOSPHATE BUFFER NA; 100MM NACL; REMARK 210 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : OLIVIA 1.10.5, CYANA 2.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 SER A 84 REMARK 465 CYS A 85 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 1 -36.37 -178.76 REMARK 500 1 ARG A 15 -70.49 -58.34 REMARK 500 1 PRO A 17 -170.93 -69.97 REMARK 500 1 PRO A 28 98.76 -69.72 REMARK 500 1 PHE A 35 -70.30 -60.67 REMARK 500 1 SER A 72 -34.89 179.92 REMARK 500 1 VAL A 82 -42.63 -136.16 REMARK 500 2 SER A 0 -60.77 -95.27 REMARK 500 2 MET A 1 58.91 -173.77 REMARK 500 2 SER A 2 125.58 -172.86 REMARK 500 2 THR A 11 -30.88 179.78 REMARK 500 2 ASP A 13 161.90 60.74 REMARK 500 2 ARG A 15 -41.26 -158.81 REMARK 500 2 PRO A 43 -177.39 -69.55 REMARK 500 2 THR A 51 -176.98 -59.11 REMARK 500 2 GLN A 61 -173.93 -175.64 REMARK 500 2 ASP A 80 -176.14 57.93 REMARK 500 2 VAL A 82 -44.72 -133.99 REMARK 500 3 PRO A -3 -171.30 -69.97 REMARK 500 3 SER A 0 141.40 -172.88 REMARK 500 3 THR A 11 -40.66 -150.89 REMARK 500 3 ARG A 15 -70.15 -55.91 REMARK 500 3 PRO A 17 -178.16 -69.86 REMARK 500 3 SER A 26 74.56 -100.28 REMARK 500 3 PRO A 43 -170.08 -69.81 REMARK 500 3 ALA A 48 115.17 -171.74 REMARK 500 3 GLN A 61 -169.62 -174.70 REMARK 500 3 GLU A 73 90.29 -64.61 REMARK 500 3 ASP A 80 179.16 62.00 REMARK 500 4 LEU A -2 68.60 -119.12 REMARK 500 4 MET A 1 -60.82 -108.60 REMARK 500 4 SER A 2 149.98 -179.36 REMARK 500 4 THR A 11 -34.81 -175.82 REMARK 500 4 PRO A 17 -170.80 -69.54 REMARK 500 4 SER A 26 72.05 -104.36 REMARK 500 4 GLN A 61 -177.51 -176.62 REMARK 500 4 SER A 72 -38.44 -169.29 REMARK 500 4 ASP A 80 90.49 -168.22 REMARK 500 4 ARG A 81 -62.09 -148.28 REMARK 500 4 VAL A 82 174.60 -57.07 REMARK 500 5 SER A 0 63.62 -163.08 REMARK 500 5 SER A 2 69.28 -163.65 REMARK 500 5 THR A 11 -37.45 -169.12 REMARK 500 5 ARG A 15 -75.56 -51.31 REMARK 500 5 PRO A 43 -170.46 -69.81 REMARK 500 5 THR A 46 31.76 -97.30 REMARK 500 5 ALA A 48 107.68 -171.75 REMARK 500 5 THR A 51 -172.34 -69.99 REMARK 500 5 ASN A 58 107.18 -48.38 REMARK 500 5 SER A 72 25.48 -141.55 REMARK 500 REMARK 500 THIS ENTRY HAS 96 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1WXS A 1 85 UNP P61960 UFM1_HUMAN 1 85 SEQADV 1WXS GLY A -4 UNP P61960 CLONING ARTIFACT SEQADV 1WXS PRO A -3 UNP P61960 CLONING ARTIFACT SEQADV 1WXS LEU A -2 UNP P61960 CLONING ARTIFACT SEQADV 1WXS GLY A -1 UNP P61960 CLONING ARTIFACT SEQADV 1WXS SER A 0 UNP P61960 CLONING ARTIFACT SEQRES 1 A 90 GLY PRO LEU GLY SER MET SER LYS VAL SER PHE LYS ILE SEQRES 2 A 90 THR LEU THR SER ASP PRO ARG LEU PRO TYR LYS VAL LEU SEQRES 3 A 90 SER VAL PRO GLU SER THR PRO PHE THR ALA VAL LEU LYS SEQRES 4 A 90 PHE ALA ALA GLU GLU PHE LYS VAL PRO ALA ALA THR SER SEQRES 5 A 90 ALA ILE ILE THR ASN ASP GLY ILE GLY ILE ASN PRO ALA SEQRES 6 A 90 GLN THR ALA GLY ASN VAL PHE LEU LYS HIS GLY SER GLU SEQRES 7 A 90 LEU ARG ILE ILE PRO ARG ASP ARG VAL GLY SER CYS HELIX 1 1 PRO A 28 PHE A 40 1 13 HELIX 2 2 THR A 62 HIS A 70 1 9 SHEET 1 A 4 VAL A 20 VAL A 23 0 SHEET 2 A 4 VAL A 4 THR A 9 -1 N PHE A 6 O LEU A 21 SHEET 3 A 4 GLU A 73 PRO A 78 1 O LEU A 74 N THR A 9 SHEET 4 A 4 SER A 47 THR A 51 -1 N ILE A 50 O ARG A 75 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1