data_1WY6 # _entry.id 1WY6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1WY6 RCSB RCSB024142 WWPDB D_1000024142 # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2005-02-15 _pdbx_database_PDB_obs_spr.pdb_id 1WY6 _pdbx_database_PDB_obs_spr.replace_pdb_id 1VDU _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1WY6 _pdbx_database_status.recvd_initial_deposition_date 2005-02-07 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yoneda, K.' 1 'Sakuraba, H.' 2 'Tsuge, H.' 3 'Katunuma, N.' 4 'Kuramitsu, S.' 5 'Kawabata, T.' 6 'Ohshima, T.' 7 # _citation.id primary _citation.title 'The first crystal structure of an archaeal helical repeat protein.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.F' _citation.journal_volume 61 _citation.page_first 636 _citation.page_last 639 _citation.year 2005 _citation.journal_id_ASTM ? _citation.country DK _citation.journal_id_ISSN 1744-3091 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16511116 _citation.pdbx_database_id_DOI 10.1107/S1744309105019263 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Yoneda, K.' 1 primary 'Sakuraba, H.' 2 primary 'Tsuge, H.' 3 primary 'Katunuma, N.' 4 primary 'Kuramitsu, S.' 5 primary 'Kawabata, T.' 6 primary 'Ohshima, T.' 7 # _cell.entry_id 1WY6 _cell.length_a 36.370 _cell.length_b 50.440 _cell.length_c 82.310 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1WY6 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'hypothetical protein ST1625' 19413.566 1 ? ? ? ? 2 water nat water 18.015 71 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;TIVKSEIIRKLMDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSV VECGVINNTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEKEAC NAVNTLTVRSVM ; _entity_poly.pdbx_seq_one_letter_code_can ;TIVKSEIIRKLMDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSV VECGVINNTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEKEAC NAVNTLTVRSVM ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 ILE n 1 3 VAL n 1 4 LYS n 1 5 SER n 1 6 GLU n 1 7 ILE n 1 8 ILE n 1 9 ARG n 1 10 LYS n 1 11 LEU n 1 12 MET n 1 13 ASP n 1 14 ALA n 1 15 LYS n 1 16 LYS n 1 17 PHE n 1 18 LEU n 1 19 LEU n 1 20 ASP n 1 21 GLY n 1 22 TYR n 1 23 ILE n 1 24 ASP n 1 25 GLU n 1 26 GLY n 1 27 VAL n 1 28 LYS n 1 29 ILE n 1 30 VAL n 1 31 LEU n 1 32 GLU n 1 33 ILE n 1 34 THR n 1 35 LYS n 1 36 SER n 1 37 SER n 1 38 THR n 1 39 LYS n 1 40 SER n 1 41 GLU n 1 42 TYR n 1 43 ASN n 1 44 TRP n 1 45 PHE n 1 46 ILE n 1 47 CYS n 1 48 ASN n 1 49 LEU n 1 50 LEU n 1 51 GLU n 1 52 SER n 1 53 ILE n 1 54 ASP n 1 55 CYS n 1 56 ARG n 1 57 TYR n 1 58 MET n 1 59 PHE n 1 60 GLN n 1 61 VAL n 1 62 LEU n 1 63 ASP n 1 64 LYS n 1 65 ILE n 1 66 GLY n 1 67 SER n 1 68 TYR n 1 69 PHE n 1 70 ASP n 1 71 LEU n 1 72 ASP n 1 73 LYS n 1 74 CYS n 1 75 GLN n 1 76 ASN n 1 77 LEU n 1 78 LYS n 1 79 SER n 1 80 VAL n 1 81 VAL n 1 82 GLU n 1 83 CYS n 1 84 GLY n 1 85 VAL n 1 86 ILE n 1 87 ASN n 1 88 ASN n 1 89 THR n 1 90 LEU n 1 91 ASN n 1 92 GLU n 1 93 HIS n 1 94 VAL n 1 95 ASN n 1 96 LYS n 1 97 ALA n 1 98 LEU n 1 99 ASP n 1 100 ILE n 1 101 LEU n 1 102 VAL n 1 103 ILE n 1 104 GLN n 1 105 GLY n 1 106 LYS n 1 107 ARG n 1 108 ASP n 1 109 LYS n 1 110 LEU n 1 111 GLU n 1 112 GLU n 1 113 ILE n 1 114 GLY n 1 115 ARG n 1 116 GLU n 1 117 ILE n 1 118 LEU n 1 119 LYS n 1 120 ASN n 1 121 ASN n 1 122 GLU n 1 123 VAL n 1 124 SER n 1 125 ALA n 1 126 SER n 1 127 ILE n 1 128 LEU n 1 129 VAL n 1 130 ALA n 1 131 ILE n 1 132 ALA n 1 133 ASN n 1 134 ALA n 1 135 LEU n 1 136 ARG n 1 137 ARG n 1 138 VAL n 1 139 GLY n 1 140 ASP n 1 141 GLU n 1 142 ARG n 1 143 ASP n 1 144 ALA n 1 145 THR n 1 146 THR n 1 147 LEU n 1 148 LEU n 1 149 ILE n 1 150 GLU n 1 151 ALA n 1 152 CYS n 1 153 LYS n 1 154 LYS n 1 155 GLY n 1 156 GLU n 1 157 LYS n 1 158 GLU n 1 159 ALA n 1 160 CYS n 1 161 ASN n 1 162 ALA n 1 163 VAL n 1 164 ASN n 1 165 THR n 1 166 LEU n 1 167 THR n 1 168 VAL n 1 169 ARG n 1 170 SER n 1 171 VAL n 1 172 MET n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Sulfolobus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sulfolobus tokodaii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 111955 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta-gamiTM (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q970G9_SULTO _struct_ref.pdbx_db_accession Q970G9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TIVKSEIIRKLMDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSV VECGVINNTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEKEAC NAVNTLTVRSVM ; _struct_ref.pdbx_align_begin 2 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1WY6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 172 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q970G9 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 173 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 173 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1WY6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.9 _exptl_crystal.density_percent_sol 35.9 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.2 _exptl_crystal_grow.pdbx_details '20% PEG 8000, 100mM phosphate/citrate, 100mM NaCl, pH 4.2, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS VII' _diffrn_detector.pdbx_collection_date 2003-10-24 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator SI _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1WY6 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.2 _reflns.d_resolution_low 500 _reflns.number_all ? _reflns.number_obs 127292 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 15.5 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1WY6 _refine.ls_d_res_high 2.2 _refine.ls_d_res_low 50.0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 127292 _refine.ls_number_reflns_R_free ? _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.222 _refine.ls_R_factor_R_free 0.275 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct MIRAS _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1254 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 71 _refine_hist.number_atoms_total 1325 _refine_hist.d_res_high 2.2 _refine_hist.d_res_low 50.0 # _struct.entry_id 1WY6 _struct.title 'Crystal Structure of Hypothetical Protein [ST1625p] from Hyperthermophilic Archaeon Sulfolobus tokodaii' _struct.pdbx_descriptor 'hypothetical protein ST1625' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1WY6 _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text 'hypothetical protein, helical repeat protein, structural genomics, UNKNOWN FUNCTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 6 ? ASP A 20 ? GLU A 7 ASP A 21 1 ? 15 HELX_P HELX_P2 2 TYR A 22 ? SER A 37 ? TYR A 23 SER A 38 1 ? 16 HELX_P HELX_P3 3 THR A 38 ? ASN A 43 ? THR A 39 ASN A 44 1 ? 6 HELX_P HELX_P4 4 ASN A 43 ? ILE A 53 ? ASN A 44 ILE A 54 1 ? 11 HELX_P HELX_P5 5 ASP A 54 ? GLY A 66 ? ASP A 55 GLY A 67 1 ? 13 HELX_P HELX_P6 6 SER A 67 ? PHE A 69 ? SER A 68 PHE A 70 5 ? 3 HELX_P HELX_P7 7 ASP A 70 ? CYS A 74 ? ASP A 71 CYS A 75 5 ? 5 HELX_P HELX_P8 8 LEU A 77 ? ASN A 87 ? LEU A 78 ASN A 88 1 ? 11 HELX_P HELX_P9 9 ASN A 91 ? GLN A 104 ? ASN A 92 GLN A 105 1 ? 14 HELX_P HELX_P10 10 LYS A 106 ? LEU A 118 ? LYS A 107 LEU A 119 1 ? 13 HELX_P HELX_P11 11 SER A 124 ? VAL A 138 ? SER A 125 VAL A 139 1 ? 15 HELX_P HELX_P12 12 ASP A 140 ? LYS A 154 ? ASP A 141 LYS A 155 1 ? 15 HELX_P HELX_P13 13 GLU A 156 ? THR A 165 ? GLU A 157 THR A 166 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 47 SG ? ? ? 1_555 A CYS 74 SG ? ? A CYS 48 A CYS 75 1_555 ? ? ? ? ? ? ? 2.030 ? disulf2 disulf ? ? A CYS 55 SG ? ? ? 1_555 A CYS 83 SG ? ? A CYS 56 A CYS 84 1_555 ? ? ? ? ? ? ? 2.032 ? disulf3 disulf ? ? A CYS 152 SG ? ? ? 1_555 A CYS 160 SG ? ? A CYS 153 A CYS 161 1_555 ? ? ? ? ? ? ? 2.029 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1WY6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1WY6 _atom_sites.fract_transf_matrix[1][1] 0.027495 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019826 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012149 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 2 ? ? ? A . n A 1 2 ILE 2 3 ? ? ? A . n A 1 3 VAL 3 4 ? ? ? A . n A 1 4 LYS 4 5 ? ? ? A . n A 1 5 SER 5 6 ? ? ? A . n A 1 6 GLU 6 7 7 GLU GLU A . n A 1 7 ILE 7 8 8 ILE ILE A . n A 1 8 ILE 8 9 9 ILE ILE A . n A 1 9 ARG 9 10 10 ARG ARG A . n A 1 10 LYS 10 11 11 LYS LYS A . n A 1 11 LEU 11 12 12 LEU LEU A . n A 1 12 MET 12 13 13 MET MET A . n A 1 13 ASP 13 14 14 ASP ASP A . n A 1 14 ALA 14 15 15 ALA ALA A . n A 1 15 LYS 15 16 16 LYS LYS A . n A 1 16 LYS 16 17 17 LYS LYS A . n A 1 17 PHE 17 18 18 PHE PHE A . n A 1 18 LEU 18 19 19 LEU LEU A . n A 1 19 LEU 19 20 20 LEU LEU A . n A 1 20 ASP 20 21 21 ASP ASP A . n A 1 21 GLY 21 22 22 GLY GLY A . n A 1 22 TYR 22 23 23 TYR TYR A . n A 1 23 ILE 23 24 24 ILE ILE A . n A 1 24 ASP 24 25 25 ASP ASP A . n A 1 25 GLU 25 26 26 GLU GLU A . n A 1 26 GLY 26 27 27 GLY GLY A . n A 1 27 VAL 27 28 28 VAL VAL A . n A 1 28 LYS 28 29 29 LYS LYS A . n A 1 29 ILE 29 30 30 ILE ILE A . n A 1 30 VAL 30 31 31 VAL VAL A . n A 1 31 LEU 31 32 32 LEU LEU A . n A 1 32 GLU 32 33 33 GLU GLU A . n A 1 33 ILE 33 34 34 ILE ILE A . n A 1 34 THR 34 35 35 THR THR A . n A 1 35 LYS 35 36 36 LYS LYS A . n A 1 36 SER 36 37 37 SER SER A . n A 1 37 SER 37 38 38 SER SER A . n A 1 38 THR 38 39 39 THR THR A . n A 1 39 LYS 39 40 40 LYS LYS A . n A 1 40 SER 40 41 41 SER SER A . n A 1 41 GLU 41 42 42 GLU GLU A . n A 1 42 TYR 42 43 43 TYR TYR A . n A 1 43 ASN 43 44 44 ASN ASN A . n A 1 44 TRP 44 45 45 TRP TRP A . n A 1 45 PHE 45 46 46 PHE PHE A . n A 1 46 ILE 46 47 47 ILE ILE A . n A 1 47 CYS 47 48 48 CYS CYS A . n A 1 48 ASN 48 49 49 ASN ASN A . n A 1 49 LEU 49 50 50 LEU LEU A . n A 1 50 LEU 50 51 51 LEU LEU A . n A 1 51 GLU 51 52 52 GLU GLU A . n A 1 52 SER 52 53 53 SER SER A . n A 1 53 ILE 53 54 54 ILE ILE A . n A 1 54 ASP 54 55 55 ASP ASP A . n A 1 55 CYS 55 56 56 CYS CYS A . n A 1 56 ARG 56 57 57 ARG ARG A . n A 1 57 TYR 57 58 58 TYR TYR A . n A 1 58 MET 58 59 59 MET MET A . n A 1 59 PHE 59 60 60 PHE PHE A . n A 1 60 GLN 60 61 61 GLN GLN A . n A 1 61 VAL 61 62 62 VAL VAL A . n A 1 62 LEU 62 63 63 LEU LEU A . n A 1 63 ASP 63 64 64 ASP ASP A . n A 1 64 LYS 64 65 65 LYS LYS A . n A 1 65 ILE 65 66 66 ILE ILE A . n A 1 66 GLY 66 67 67 GLY GLY A . n A 1 67 SER 67 68 68 SER SER A . n A 1 68 TYR 68 69 69 TYR TYR A . n A 1 69 PHE 69 70 70 PHE PHE A . n A 1 70 ASP 70 71 71 ASP ASP A . n A 1 71 LEU 71 72 72 LEU LEU A . n A 1 72 ASP 72 73 73 ASP ASP A . n A 1 73 LYS 73 74 74 LYS LYS A . n A 1 74 CYS 74 75 75 CYS CYS A . n A 1 75 GLN 75 76 76 GLN GLN A . n A 1 76 ASN 76 77 77 ASN ASN A . n A 1 77 LEU 77 78 78 LEU LEU A . n A 1 78 LYS 78 79 79 LYS LYS A . n A 1 79 SER 79 80 80 SER SER A . n A 1 80 VAL 80 81 81 VAL VAL A . n A 1 81 VAL 81 82 82 VAL VAL A . n A 1 82 GLU 82 83 83 GLU GLU A . n A 1 83 CYS 83 84 84 CYS CYS A . n A 1 84 GLY 84 85 85 GLY GLY A . n A 1 85 VAL 85 86 86 VAL VAL A . n A 1 86 ILE 86 87 87 ILE ILE A . n A 1 87 ASN 87 88 88 ASN ASN A . n A 1 88 ASN 88 89 89 ASN ASN A . n A 1 89 THR 89 90 90 THR THR A . n A 1 90 LEU 90 91 91 LEU LEU A . n A 1 91 ASN 91 92 92 ASN ASN A . n A 1 92 GLU 92 93 93 GLU GLU A . n A 1 93 HIS 93 94 94 HIS HIS A . n A 1 94 VAL 94 95 95 VAL VAL A . n A 1 95 ASN 95 96 96 ASN ASN A . n A 1 96 LYS 96 97 97 LYS LYS A . n A 1 97 ALA 97 98 98 ALA ALA A . n A 1 98 LEU 98 99 99 LEU LEU A . n A 1 99 ASP 99 100 100 ASP ASP A . n A 1 100 ILE 100 101 101 ILE ILE A . n A 1 101 LEU 101 102 102 LEU LEU A . n A 1 102 VAL 102 103 103 VAL VAL A . n A 1 103 ILE 103 104 104 ILE ILE A . n A 1 104 GLN 104 105 105 GLN GLN A . n A 1 105 GLY 105 106 106 GLY GLY A . n A 1 106 LYS 106 107 107 LYS LYS A . n A 1 107 ARG 107 108 108 ARG ARG A . n A 1 108 ASP 108 109 109 ASP ASP A . n A 1 109 LYS 109 110 110 LYS LYS A . n A 1 110 LEU 110 111 111 LEU LEU A . n A 1 111 GLU 111 112 112 GLU GLU A . n A 1 112 GLU 112 113 113 GLU GLU A . n A 1 113 ILE 113 114 114 ILE ILE A . n A 1 114 GLY 114 115 115 GLY GLY A . n A 1 115 ARG 115 116 116 ARG ARG A . n A 1 116 GLU 116 117 117 GLU GLU A . n A 1 117 ILE 117 118 118 ILE ILE A . n A 1 118 LEU 118 119 119 LEU LEU A . n A 1 119 LYS 119 120 ? ? ? A . n A 1 120 ASN 120 121 ? ? ? A . n A 1 121 ASN 121 122 122 ASN ASN A . n A 1 122 GLU 122 123 123 GLU GLU A . n A 1 123 VAL 123 124 124 VAL VAL A . n A 1 124 SER 124 125 125 SER SER A . n A 1 125 ALA 125 126 126 ALA ALA A . n A 1 126 SER 126 127 127 SER SER A . n A 1 127 ILE 127 128 128 ILE ILE A . n A 1 128 LEU 128 129 129 LEU LEU A . n A 1 129 VAL 129 130 130 VAL VAL A . n A 1 130 ALA 130 131 131 ALA ALA A . n A 1 131 ILE 131 132 132 ILE ILE A . n A 1 132 ALA 132 133 133 ALA ALA A . n A 1 133 ASN 133 134 134 ASN ASN A . n A 1 134 ALA 134 135 135 ALA ALA A . n A 1 135 LEU 135 136 136 LEU LEU A . n A 1 136 ARG 136 137 137 ARG ARG A . n A 1 137 ARG 137 138 138 ARG ARG A . n A 1 138 VAL 138 139 139 VAL VAL A . n A 1 139 GLY 139 140 140 GLY GLY A . n A 1 140 ASP 140 141 141 ASP ASP A . n A 1 141 GLU 141 142 142 GLU GLU A . n A 1 142 ARG 142 143 143 ARG ARG A . n A 1 143 ASP 143 144 144 ASP ASP A . n A 1 144 ALA 144 145 145 ALA ALA A . n A 1 145 THR 145 146 146 THR THR A . n A 1 146 THR 146 147 147 THR THR A . n A 1 147 LEU 147 148 148 LEU LEU A . n A 1 148 LEU 148 149 149 LEU LEU A . n A 1 149 ILE 149 150 150 ILE ILE A . n A 1 150 GLU 150 151 151 GLU GLU A . n A 1 151 ALA 151 152 152 ALA ALA A . n A 1 152 CYS 152 153 153 CYS CYS A . n A 1 153 LYS 153 154 154 LYS LYS A . n A 1 154 LYS 154 155 155 LYS LYS A . n A 1 155 GLY 155 156 156 GLY GLY A . n A 1 156 GLU 156 157 157 GLU GLU A . n A 1 157 LYS 157 158 158 LYS LYS A . n A 1 158 GLU 158 159 159 GLU GLU A . n A 1 159 ALA 159 160 160 ALA ALA A . n A 1 160 CYS 160 161 161 CYS CYS A . n A 1 161 ASN 161 162 162 ASN ASN A . n A 1 162 ALA 162 163 163 ALA ALA A . n A 1 163 VAL 163 164 164 VAL VAL A . n A 1 164 ASN 164 165 165 ASN ASN A . n A 1 165 THR 165 166 166 THR THR A . n A 1 166 LEU 166 167 167 LEU LEU A . n A 1 167 THR 167 168 ? ? ? A . n A 1 168 VAL 168 169 ? ? ? A . n A 1 169 ARG 169 170 ? ? ? A . n A 1 170 SER 170 171 ? ? ? A . n A 1 171 VAL 171 172 ? ? ? A . n A 1 172 MET 172 173 ? ? ? A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-02-15 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Crystal 'data collection' Clear ? 1 HKL-2000 'data reduction' . ? 2 SOLVE phasing . ? 3 CNS refinement 1.1 ? 4 CrystalClear 'data reduction' '(MSC/RIGAKU)' ? 5 HKL-2000 'data scaling' . ? 6 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 41 ? ? -63.83 41.46 2 1 GLU A 42 ? ? -152.69 -33.30 3 1 ASP A 141 ? ? -100.42 71.61 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A THR 2 ? A THR 1 2 1 Y 1 A ILE 3 ? A ILE 2 3 1 Y 1 A VAL 4 ? A VAL 3 4 1 Y 1 A LYS 5 ? A LYS 4 5 1 Y 1 A SER 6 ? A SER 5 6 1 Y 1 A LYS 120 ? A LYS 119 7 1 Y 1 A ASN 121 ? A ASN 120 8 1 Y 1 A THR 168 ? A THR 167 9 1 Y 1 A VAL 169 ? A VAL 168 10 1 Y 1 A ARG 170 ? A ARG 169 11 1 Y 1 A SER 171 ? A SER 170 12 1 Y 1 A VAL 172 ? A VAL 171 13 1 Y 1 A MET 173 ? A MET 172 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 174 1 HOH HOH A . B 2 HOH 2 175 2 HOH HOH A . B 2 HOH 3 176 3 HOH HOH A . B 2 HOH 4 177 4 HOH HOH A . B 2 HOH 5 178 5 HOH HOH A . B 2 HOH 6 179 6 HOH HOH A . B 2 HOH 7 180 7 HOH HOH A . B 2 HOH 8 181 8 HOH HOH A . B 2 HOH 9 182 9 HOH HOH A . B 2 HOH 10 183 10 HOH HOH A . B 2 HOH 11 184 11 HOH HOH A . B 2 HOH 12 185 12 HOH HOH A . B 2 HOH 13 186 13 HOH HOH A . B 2 HOH 14 187 14 HOH HOH A . B 2 HOH 15 188 15 HOH HOH A . B 2 HOH 16 189 16 HOH HOH A . B 2 HOH 17 190 17 HOH HOH A . B 2 HOH 18 191 18 HOH HOH A . B 2 HOH 19 192 19 HOH HOH A . B 2 HOH 20 193 20 HOH HOH A . B 2 HOH 21 194 21 HOH HOH A . B 2 HOH 22 195 22 HOH HOH A . B 2 HOH 23 196 23 HOH HOH A . B 2 HOH 24 197 24 HOH HOH A . B 2 HOH 25 198 25 HOH HOH A . B 2 HOH 26 199 26 HOH HOH A . B 2 HOH 27 200 27 HOH HOH A . B 2 HOH 28 201 28 HOH HOH A . B 2 HOH 29 202 29 HOH HOH A . B 2 HOH 30 203 30 HOH HOH A . B 2 HOH 31 204 31 HOH HOH A . B 2 HOH 32 205 32 HOH HOH A . B 2 HOH 33 206 33 HOH HOH A . B 2 HOH 34 207 34 HOH HOH A . B 2 HOH 35 208 35 HOH HOH A . B 2 HOH 36 209 36 HOH HOH A . B 2 HOH 37 210 37 HOH HOH A . B 2 HOH 38 211 38 HOH HOH A . B 2 HOH 39 212 39 HOH HOH A . B 2 HOH 40 213 40 HOH HOH A . B 2 HOH 41 214 41 HOH HOH A . B 2 HOH 42 215 42 HOH HOH A . B 2 HOH 43 216 43 HOH HOH A . B 2 HOH 44 217 44 HOH HOH A . B 2 HOH 45 218 45 HOH HOH A . B 2 HOH 46 219 46 HOH HOH A . B 2 HOH 47 220 47 HOH HOH A . B 2 HOH 48 221 48 HOH HOH A . B 2 HOH 49 222 49 HOH HOH A . B 2 HOH 50 223 50 HOH HOH A . B 2 HOH 51 224 51 HOH HOH A . B 2 HOH 52 225 52 HOH HOH A . B 2 HOH 53 226 53 HOH HOH A . B 2 HOH 54 227 54 HOH HOH A . B 2 HOH 55 228 55 HOH HOH A . B 2 HOH 56 229 56 HOH HOH A . B 2 HOH 57 230 57 HOH HOH A . B 2 HOH 58 231 58 HOH HOH A . B 2 HOH 59 232 59 HOH HOH A . B 2 HOH 60 233 60 HOH HOH A . B 2 HOH 61 234 61 HOH HOH A . B 2 HOH 62 235 62 HOH HOH A . B 2 HOH 63 236 63 HOH HOH A . B 2 HOH 64 237 64 HOH HOH A . B 2 HOH 65 238 65 HOH HOH A . B 2 HOH 66 239 66 HOH HOH A . B 2 HOH 67 240 67 HOH HOH A . B 2 HOH 68 241 68 HOH HOH A . B 2 HOH 69 242 69 HOH HOH A . B 2 HOH 70 243 70 HOH HOH A . B 2 HOH 71 244 71 HOH HOH A . #