HEADER VIRAL PROTEIN, HYDROLASE 12-JAN-98 1WYK TITLE SINDBIS VIRUS CAPSID PROTEIN (114-264) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SINDBIS VIRUS CAPSID PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 SYNONYM: SINDBIS VIRUS CORE PROTEIN; COMPND 6 EC: 3.4.21.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SINDBIS VIRUS; SOURCE 3 ORGANISM_TAXID: 11034; SOURCE 4 STRAIN: SA-AR 86; SOURCE 5 CELL_LINE: BL21; SOURCE 6 GENE: POTENTIAL; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET11A; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: BL21 KEYWDS COAT PROTEIN, SINDBIS, VIRUS, PROTEINASE, ALPHAVIRUS, CAPSID, KEYWDS 2 DIOXANE, VIRAL PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.LEE,R.J.KUHN,M.G.ROSSMANN REVDAT 3 03-APR-24 1WYK 1 REMARK LINK REVDAT 2 24-FEB-09 1WYK 1 VERSN REVDAT 1 29-APR-98 1WYK 0 JRNL AUTH S.LEE,R.J.KUHN,M.G.ROSSMANN JRNL TITL PROBING THE POTENTIAL GLYCOPROTEIN BINDING SITE OF SINDBIS JRNL TITL 2 VIRUS CAPSID PROTEIN WITH DIOXANE AND MODEL BUILDING. JRNL REF PROTEINS V. 33 311 1998 JRNL REFN ISSN 0887-3585 JRNL PMID 9779796 JRNL DOI 10.1002/(SICI)1097-0134(19981101)33:2<311::AID-PROT13>3.3.CO JRNL DOI 2 ;2-L REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.LEE,K.E.OWEN,H.K.CHOI,H.LEE,G.LU,G.WENGLER,D.T.BROWN, REMARK 1 AUTH 2 M.G.ROSSMANN,R.J.KUHN REMARK 1 TITL IDENTIFICATION OF A PROTEIN BINDING SITE ON THE SURFACE OF REMARK 1 TITL 2 THE ALPHAVIRUS NUCLEOCAPSID AND ITS IMPLICATION IN VIRUS REMARK 1 TITL 3 ASSEMBLY REMARK 1 REF STRUCTURE V. 4 531 1996 REMARK 1 REFN ISSN 0969-2126 REMARK 1 REFERENCE 2 REMARK 1 AUTH H.K.CHOI,L.TONG,W.MINOR,P.DUMAS,U.BOEGE,M.G.ROSSMANN, REMARK 1 AUTH 2 G.WENGLER REMARK 1 TITL STRUCTURE OF SINDBIS VIRUS CORE PROTEIN REVEALS A REMARK 1 TITL 2 CHYMOTRYPSIN-LIKE SERINE PROTEINASE AND THE ORGANIZATION OF REMARK 1 TITL 3 THE VIRION REMARK 1 REF NATURE V. 354 37 1991 REMARK 1 REFN ISSN 0028-0836 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 304.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 9.7000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 78.0 REMARK 3 NUMBER OF REFLECTIONS : 28043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1365 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 24.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 473 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE : 0.3670 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 1.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 24 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.074 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4688 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 469 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 30.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.734 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.87 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.571 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : MOL1 AND MOL4, MOL2 AND MOL3 WERE RESTRAINED IN A REMARK 3 PAIRWISE MANNER DURING REFINEMENT. REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : FORMET.PAR REMARK 3 PARAMETER FILE 3 : DIO.PAR REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH19.PEP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WYK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000177235. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-95 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : BENT FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL REMARK 200 DATA SCALING SOFTWARE : HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28851 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 78.3 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.02800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 28.8 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.08900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: SINDBIS VIRUS CAPSID PROTEIN MUTANT (S215A, 106 REMARK 200 -266) IN TRICLINIC CRYSTAL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-26%(W/V) PEG 8000, 100 MM SODIUM REMARK 280 CACODYLATE, PH6.5, 150MM SODIUM ACETATE, 6%(V/V) DIOXANE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS B 255 HG1 THR B 257 1.13 REMARK 500 HZ3 LYS A 119 H2 HOH A 331 1.24 REMARK 500 HH22 ARG B 239 H1 HOH B 346 1.26 REMARK 500 H1 HOH D 292 O HOH D 342 1.52 REMARK 500 O HOH D 332 H2 HOH D 349 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 333 H1 HOH D 349 1655 1.60 REMARK 500 H1 HOH A 285 O HOH A 332 1655 1.60 REMARK 500 H1 HOH C 296 O HOH D 349 1655 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 164 CB - CG - SD ANGL. DEV. = -19.6 DEGREES REMARK 500 ARG B 217 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 MET C 164 CB - CG - SD ANGL. DEV. = -25.0 DEGREES REMARK 500 ARG C 217 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 LEU D 169 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 ARG D 239 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 239 -169.05 -117.24 REMARK 500 ASP B 235 92.14 -69.92 REMARK 500 GLU B 236 40.05 -104.30 REMARK 500 ASN C 172 5.21 -67.92 REMARK 500 ARG D 239 -169.45 -116.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 180 0.07 SIDE CHAIN REMARK 500 TYR C 180 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FOR A 112 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FOR B 112 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FOR C 112 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FOR D 112 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DIO A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DIO B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DIO B 22 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DIO C 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DIO D 4 DBREF 1WYK A 114 264 UNP P27285 POLS_SINDO 114 264 DBREF 1WYK B 114 264 UNP P27285 POLS_SINDO 114 264 DBREF 1WYK C 114 264 UNP P27285 POLS_SINDO 114 264 DBREF 1WYK D 114 264 UNP P27285 POLS_SINDO 114 264 SEQRES 1 A 152 MET ARG LEU PHE ASP VAL LYS ASN GLU ASP GLY ASP VAL SEQRES 2 A 152 ILE GLY HIS ALA LEU ALA MET GLU GLY LYS VAL MET LYS SEQRES 3 A 152 PRO LEU HIS VAL LYS GLY THR ILE ASP HIS PRO VAL LEU SEQRES 4 A 152 SER LYS LEU LYS PHE THR LYS SER SER ALA TYR ASP MET SEQRES 5 A 152 GLU PHE ALA GLN LEU PRO VAL ASN MET ARG SER GLU ALA SEQRES 6 A 152 PHE THR TYR THR SER GLU HIS PRO GLU GLY PHE TYR ASN SEQRES 7 A 152 TRP HIS HIS GLY ALA VAL GLN TYR SER GLY GLY ARG PHE SEQRES 8 A 152 THR ILE PRO ARG GLY VAL GLY GLY ARG GLY ASP SER GLY SEQRES 9 A 152 ARG PRO ILE MET ASP ASN SER GLY ARG VAL VAL ALA ILE SEQRES 10 A 152 VAL LEU GLY GLY ALA ASP GLU GLY THR ARG THR ALA LEU SEQRES 11 A 152 SER VAL VAL THR TRP ASN SER LYS GLY LYS THR ILE LYS SEQRES 12 A 152 THR THR PRO GLU GLY THR GLU GLU TRP SEQRES 1 B 152 MET ARG LEU PHE ASP VAL LYS ASN GLU ASP GLY ASP VAL SEQRES 2 B 152 ILE GLY HIS ALA LEU ALA MET GLU GLY LYS VAL MET LYS SEQRES 3 B 152 PRO LEU HIS VAL LYS GLY THR ILE ASP HIS PRO VAL LEU SEQRES 4 B 152 SER LYS LEU LYS PHE THR LYS SER SER ALA TYR ASP MET SEQRES 5 B 152 GLU PHE ALA GLN LEU PRO VAL ASN MET ARG SER GLU ALA SEQRES 6 B 152 PHE THR TYR THR SER GLU HIS PRO GLU GLY PHE TYR ASN SEQRES 7 B 152 TRP HIS HIS GLY ALA VAL GLN TYR SER GLY GLY ARG PHE SEQRES 8 B 152 THR ILE PRO ARG GLY VAL GLY GLY ARG GLY ASP SER GLY SEQRES 9 B 152 ARG PRO ILE MET ASP ASN SER GLY ARG VAL VAL ALA ILE SEQRES 10 B 152 VAL LEU GLY GLY ALA ASP GLU GLY THR ARG THR ALA LEU SEQRES 11 B 152 SER VAL VAL THR TRP ASN SER LYS GLY LYS THR ILE LYS SEQRES 12 B 152 THR THR PRO GLU GLY THR GLU GLU TRP SEQRES 1 C 152 MET ARG LEU PHE ASP VAL LYS ASN GLU ASP GLY ASP VAL SEQRES 2 C 152 ILE GLY HIS ALA LEU ALA MET GLU GLY LYS VAL MET LYS SEQRES 3 C 152 PRO LEU HIS VAL LYS GLY THR ILE ASP HIS PRO VAL LEU SEQRES 4 C 152 SER LYS LEU LYS PHE THR LYS SER SER ALA TYR ASP MET SEQRES 5 C 152 GLU PHE ALA GLN LEU PRO VAL ASN MET ARG SER GLU ALA SEQRES 6 C 152 PHE THR TYR THR SER GLU HIS PRO GLU GLY PHE TYR ASN SEQRES 7 C 152 TRP HIS HIS GLY ALA VAL GLN TYR SER GLY GLY ARG PHE SEQRES 8 C 152 THR ILE PRO ARG GLY VAL GLY GLY ARG GLY ASP SER GLY SEQRES 9 C 152 ARG PRO ILE MET ASP ASN SER GLY ARG VAL VAL ALA ILE SEQRES 10 C 152 VAL LEU GLY GLY ALA ASP GLU GLY THR ARG THR ALA LEU SEQRES 11 C 152 SER VAL VAL THR TRP ASN SER LYS GLY LYS THR ILE LYS SEQRES 12 C 152 THR THR PRO GLU GLY THR GLU GLU TRP SEQRES 1 D 152 MET ARG LEU PHE ASP VAL LYS ASN GLU ASP GLY ASP VAL SEQRES 2 D 152 ILE GLY HIS ALA LEU ALA MET GLU GLY LYS VAL MET LYS SEQRES 3 D 152 PRO LEU HIS VAL LYS GLY THR ILE ASP HIS PRO VAL LEU SEQRES 4 D 152 SER LYS LEU LYS PHE THR LYS SER SER ALA TYR ASP MET SEQRES 5 D 152 GLU PHE ALA GLN LEU PRO VAL ASN MET ARG SER GLU ALA SEQRES 6 D 152 PHE THR TYR THR SER GLU HIS PRO GLU GLY PHE TYR ASN SEQRES 7 D 152 TRP HIS HIS GLY ALA VAL GLN TYR SER GLY GLY ARG PHE SEQRES 8 D 152 THR ILE PRO ARG GLY VAL GLY GLY ARG GLY ASP SER GLY SEQRES 9 D 152 ARG PRO ILE MET ASP ASN SER GLY ARG VAL VAL ALA ILE SEQRES 10 D 152 VAL LEU GLY GLY ALA ASP GLU GLY THR ARG THR ALA LEU SEQRES 11 D 152 SER VAL VAL THR TRP ASN SER LYS GLY LYS THR ILE LYS SEQRES 12 D 152 THR THR PRO GLU GLY THR GLU GLU TRP HET FOR A 112 2 HET DIO A 1 6 HET FOR B 112 2 HET DIO B 2 6 HET DIO B 22 6 HET FOR C 112 2 HET DIO C 3 6 HET FOR D 112 2 HET DIO D 4 6 HETNAM FOR FORMYL GROUP HETNAM DIO 1,4-DIETHYLENE DIOXIDE FORMUL 5 FOR 4(C H2 O) FORMUL 6 DIO 5(C4 H8 O2) FORMUL 14 HOH *469(H2 O) HELIX 1 1 LEU A 151 LYS A 153 5 3 HELIX 2 2 SER A 160 TYR A 162 5 3 HELIX 3 3 VAL A 171 MET A 173 5 3 HELIX 4 4 LEU B 151 LYS B 153 5 3 HELIX 5 5 VAL B 171 MET B 173 5 3 HELIX 6 6 LEU C 151 LYS C 153 5 3 HELIX 7 7 VAL C 171 MET C 173 5 3 HELIX 8 8 LEU D 151 LYS D 153 5 3 HELIX 9 9 SER D 160 TYR D 162 5 3 HELIX 10 10 VAL D 171 SER D 175 5 5 SHEET 1 A 6 THR A 157 SER A 159 0 SHEET 2 A 6 MET A 164 GLN A 168 -1 N PHE A 166 O THR A 157 SHEET 3 A 6 LYS A 135 PRO A 139 -1 N LYS A 138 O GLU A 165 SHEET 4 A 6 VAL A 125 MET A 132 -1 N MET A 132 O LYS A 135 SHEET 5 A 6 LEU A 115 LYS A 119 -1 N VAL A 118 O ILE A 126 SHEET 6 A 6 THR A 145 ASP A 147 -1 N ASP A 147 O ASP A 117 SHEET 1 1B 5 GLY A 187 TRP A 191 0 SHEET 2 1B 5 GLY A 194 SER A 199 -1 N TYR A 198 O GLY A 187 SHEET 3 1B 5 ARG A 202 PRO A 206 -1 N THR A 204 O GLN A 197 SHEET 4 1B 5 ARG A 239 VAL A 245 -1 N THR A 240 O ILE A 205 SHEET 5 1B 5 THR A 253 THR A 256 -1 N THR A 256 O VAL A 244 SHEET 1 2B 6 GLY A 187 TRP A 191 0 SHEET 2 2B 6 GLY A 194 SER A 199 -1 N TYR A 198 O GLY A 187 SHEET 3 2B 6 ARG A 202 PRO A 206 -1 N THR A 204 O GLN A 197 SHEET 4 2B 6 ARG A 239 VAL A 245 -1 N THR A 240 O ILE A 205 SHEET 5 2B 6 VAL A 226 GLU A 236 -1 N GLU A 236 O ARG A 239 SHEET 6 2B 6 THR A 261 GLU A 263 -1 N GLU A 262 O GLY A 233 SHEET 1 3B 6 GLY A 187 TRP A 191 0 SHEET 2 3B 6 GLY A 194 SER A 199 -1 N TYR A 198 O GLY A 187 SHEET 3 3B 6 ARG A 202 PRO A 206 -1 N THR A 204 O GLN A 197 SHEET 4 3B 6 ARG A 239 VAL A 245 -1 N THR A 240 O ILE A 205 SHEET 5 3B 6 VAL A 226 GLU A 236 -1 N GLU A 236 O ARG A 239 SHEET 6 3B 6 PRO A 218 MET A 220 -1 N ILE A 219 O VAL A 227 SHEET 1 C 6 THR B 157 SER B 159 0 SHEET 2 C 6 MET B 164 GLN B 168 -1 N PHE B 166 O THR B 157 SHEET 3 C 6 LYS B 135 PRO B 139 -1 N LYS B 138 O GLU B 165 SHEET 4 C 6 VAL B 125 MET B 132 -1 N MET B 132 O LYS B 135 SHEET 5 C 6 LEU B 115 LYS B 119 -1 N VAL B 118 O ILE B 126 SHEET 6 C 6 THR B 145 ASP B 147 -1 N ASP B 147 O ASP B 117 SHEET 1 1D 5 GLY B 187 TRP B 191 0 SHEET 2 1D 5 GLY B 194 SER B 199 -1 N TYR B 198 O GLY B 187 SHEET 3 1D 5 ARG B 202 PRO B 206 -1 N THR B 204 O GLN B 197 SHEET 4 1D 5 ARG B 239 VAL B 245 -1 N THR B 240 O ILE B 205 SHEET 5 1D 5 THR B 253 THR B 256 -1 N THR B 256 O VAL B 244 SHEET 1 2D 6 GLY B 187 TRP B 191 0 SHEET 2 2D 6 GLY B 194 SER B 199 -1 N TYR B 198 O GLY B 187 SHEET 3 2D 6 ARG B 202 PRO B 206 -1 N THR B 204 O GLN B 197 SHEET 4 2D 6 ARG B 239 VAL B 245 -1 N THR B 240 O ILE B 205 SHEET 5 2D 6 VAL B 226 GLU B 236 -1 N GLU B 236 O ARG B 239 SHEET 6 2D 6 THR B 261 GLU B 263 -1 N GLU B 262 O GLY B 233 SHEET 1 3D 6 GLY B 187 TRP B 191 0 SHEET 2 3D 6 GLY B 194 SER B 199 -1 N TYR B 198 O GLY B 187 SHEET 3 3D 6 ARG B 202 PRO B 206 -1 N THR B 204 O GLN B 197 SHEET 4 3D 6 ARG B 239 VAL B 245 -1 N THR B 240 O ILE B 205 SHEET 5 3D 6 VAL B 226 GLU B 236 -1 N GLU B 236 O ARG B 239 SHEET 6 3D 6 PRO B 218 MET B 220 -1 N ILE B 219 O VAL B 227 SHEET 1 E 6 THR C 157 SER C 159 0 SHEET 2 E 6 MET C 164 GLN C 168 -1 N PHE C 166 O THR C 157 SHEET 3 E 6 LYS C 135 PRO C 139 -1 N LYS C 138 O GLU C 165 SHEET 4 E 6 VAL C 125 MET C 132 -1 N MET C 132 O LYS C 135 SHEET 5 E 6 LEU C 115 LYS C 119 -1 N VAL C 118 O ILE C 126 SHEET 6 E 6 THR C 145 ASP C 147 -1 N ASP C 147 O ASP C 117 SHEET 1 1F 5 GLY C 187 TRP C 191 0 SHEET 2 1F 5 GLY C 194 SER C 199 -1 N TYR C 198 O GLY C 187 SHEET 3 1F 5 ARG C 202 PRO C 206 -1 N THR C 204 O GLN C 197 SHEET 4 1F 5 ARG C 239 VAL C 245 -1 N THR C 240 O ILE C 205 SHEET 5 1F 5 THR C 253 THR C 256 -1 N THR C 256 O VAL C 244 SHEET 1 2F 6 GLY C 187 TRP C 191 0 SHEET 2 2F 6 GLY C 194 SER C 199 -1 N TYR C 198 O GLY C 187 SHEET 3 2F 6 ARG C 202 PRO C 206 -1 N THR C 204 O GLN C 197 SHEET 4 2F 6 ARG C 239 VAL C 245 -1 N THR C 240 O ILE C 205 SHEET 5 2F 6 VAL C 226 GLU C 236 -1 N GLU C 236 O ARG C 239 SHEET 6 2F 6 THR C 261 GLU C 263 -1 N GLU C 262 O GLY C 233 SHEET 1 3F 6 GLY C 187 TRP C 191 0 SHEET 2 3F 6 GLY C 194 SER C 199 -1 N TYR C 198 O GLY C 187 SHEET 3 3F 6 ARG C 202 PRO C 206 -1 N THR C 204 O GLN C 197 SHEET 4 3F 6 ARG C 239 VAL C 245 -1 N THR C 240 O ILE C 205 SHEET 5 3F 6 VAL C 226 GLU C 236 -1 N GLU C 236 O ARG C 239 SHEET 6 3F 6 PRO C 218 MET C 220 -1 N ILE C 219 O VAL C 227 SHEET 1 G 6 THR D 157 SER D 159 0 SHEET 2 G 6 MET D 164 GLN D 168 -1 N PHE D 166 O THR D 157 SHEET 3 G 6 LYS D 135 PRO D 139 -1 N LYS D 138 O GLU D 165 SHEET 4 G 6 VAL D 125 MET D 132 -1 N MET D 132 O LYS D 135 SHEET 5 G 6 LEU D 115 LYS D 119 -1 N VAL D 118 O ILE D 126 SHEET 6 G 6 THR D 145 ASP D 147 -1 N ASP D 147 O ASP D 117 SHEET 1 1H 5 GLY D 187 TRP D 191 0 SHEET 2 1H 5 GLY D 194 SER D 199 -1 N TYR D 198 O GLY D 187 SHEET 3 1H 5 ARG D 202 PRO D 206 -1 N THR D 204 O GLN D 197 SHEET 4 1H 5 ARG D 239 VAL D 245 -1 N THR D 240 O ILE D 205 SHEET 5 1H 5 THR D 253 THR D 256 -1 N THR D 256 O VAL D 244 SHEET 1 2H 6 GLY D 187 TRP D 191 0 SHEET 2 2H 6 GLY D 194 SER D 199 -1 N TYR D 198 O GLY D 187 SHEET 3 2H 6 ARG D 202 PRO D 206 -1 N THR D 204 O GLN D 197 SHEET 4 2H 6 ARG D 239 VAL D 245 -1 N THR D 240 O ILE D 205 SHEET 5 2H 6 VAL D 226 GLU D 236 -1 N GLU D 236 O ARG D 239 SHEET 6 2H 6 THR D 261 GLU D 263 -1 N GLU D 262 O GLY D 233 SHEET 1 3H 6 GLY D 187 TRP D 191 0 SHEET 2 3H 6 GLY D 194 SER D 199 -1 N TYR D 198 O GLY D 187 SHEET 3 3H 6 ARG D 202 PRO D 206 -1 N THR D 204 O GLN D 197 SHEET 4 3H 6 ARG D 239 VAL D 245 -1 N THR D 240 O ILE D 205 SHEET 5 3H 6 VAL D 226 GLU D 236 -1 N GLU D 236 O ARG D 239 SHEET 6 3H 6 PRO D 218 MET D 220 -1 N ILE D 219 O VAL D 227 LINK C FOR A 112 N MET A 113 1555 1555 1.33 LINK C FOR B 112 N MET B 113 1555 1555 1.35 LINK C FOR C 112 N MET C 113 1555 1555 1.34 LINK C FOR D 112 N MET D 113 1555 1555 1.34 SITE 1 AC1 2 MET A 113 ARG A 114 SITE 1 AC2 2 MET B 113 VAL C 125 SITE 1 AC3 1 MET C 113 SITE 1 AC4 1 MET D 113 SITE 1 AC5 5 MET A 132 GLU A 133 ARG A 207 TRP A 247 SITE 2 AC5 5 HOH A 396 SITE 1 AC6 2 TRP B 247 HOH B 369 SITE 1 AC7 5 HOH A 306 TYR B 162 TRP B 247 THR B 253 SITE 2 AC7 5 HOH B 369 SITE 1 AC8 3 GLU C 133 LYS C 135 MET C 137 SITE 1 AC9 4 MET D 132 ARG D 207 TRP D 247 HOH D 372 CRYST1 35.980 59.540 71.050 109.40 101.50 90.14 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027793 0.000068 0.006036 0.00000 SCALE2 0.000000 0.016795 0.006061 0.00000 SCALE3 0.000000 0.000000 0.015270 0.00000 MTRIX1 1 0.779681 -0.566030 -0.267782 10.57200 1 MTRIX2 1 -0.551434 -0.823279 0.134653 3.26650 1 MTRIX3 1 -0.296677 0.042677 -0.954024 59.15730 1 MTRIX1 2 0.771114 -0.569340 -0.285017 24.74110 1 MTRIX2 2 0.554856 0.820461 -0.137759 9.75640 1 MTRIX3 2 0.312277 -0.051915 0.948571 31.76610 1 MTRIX1 3 0.999996 -0.002136 -0.001906 -0.12810 1 MTRIX2 3 -0.002132 -0.999996 0.002090 36.70060 1 MTRIX3 3 -0.001910 -0.002086 -0.999996 25.51190 1 MTRIX1 4 0.999810 0.005077 0.018823 13.04100 1 MTRIX2 4 0.005045 -0.999986 0.001786 12.86390 1 MTRIX3 4 0.018831 -0.001691 -0.999821 90.71930 1