HEADER HYDROLASE 17-FEB-05 1WYW TITLE CRYSTAL STRUCTURE OF SUMO1-CONJUGATED THYMINE DNA GLYCOSYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: G/T MISMATCH-SPECIFIC THYMINE DNA GLYCOSYLASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CENTRAL REGION; COMPND 5 SYNONYM: TDG; COMPND 6 EC: 3.2.2.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: UBIQUITIN-LIKE PROTEIN SMT3C; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: UBIQUITIN-HOMOLOGY DOMAIN PROTEIN PIC1, UBIQUITIN-LIKE COMPND 12 PROTEIN UBL1, UBIQUITIN-RELATED PROTEIN SUMO-1, GAP MODIFYING PROTEIN COMPND 13 1, GMP1, SENTRIN, OK/SW-CL.43; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX4T-3; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PT-E1E2S1 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.BABA,N.MAITA,J.G.JEE,Y.UCHIMURA,H.SAITOH,K.SUGASAWA,F.HANAOKA, AUTHOR 2 H.TOCHIO,H.HIROAKI,M.SHIRAKAWA REVDAT 3 25-OCT-23 1WYW 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1WYW 1 VERSN REVDAT 1 21-JUN-05 1WYW 0 JRNL AUTH D.BABA,N.MAITA,J.G.JEE,Y.UCHIMURA,H.SAITOH,K.SUGASAWA, JRNL AUTH 2 F.HANAOKA,H.TOCHIO,H.HIROAKI,M.SHIRAKAWA JRNL TITL CRYSTAL STRUCTURE OF THYMINE DNA GLYCOSYLASE CONJUGATED TO JRNL TITL 2 SUMO-1. JRNL REF NATURE V. 435 979 2005 JRNL REFN ISSN 0028-0836 JRNL PMID 15959518 JRNL DOI 10.1038/NATURE03634 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19113 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 931 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.17 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 78 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2361 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 168 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : 0.12 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.240 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.41 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.838 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WYW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-FEB-05. REMARK 100 THE DEPOSITION ID IS D_1000024167. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19228 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.00 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : 0.08700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 19.40 REMARK 200 R MERGE FOR SHELL (I) : 0.31000 REMARK 200 R SYM FOR SHELL (I) : 0.31000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1MUG, 1EUV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.1M TRIS, 0.2M MAGNESIUM REMARK 280 CHLORIDE, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.10600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.21700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.21000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.21700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.10600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.21000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 110 REMARK 465 SER A 111 REMARK 465 ASN A 112 REMARK 465 GLY A 113 REMARK 465 VAL A 114 REMARK 465 SER A 115 REMARK 465 GLU A 116 REMARK 465 LYS A 333 REMARK 465 TYR A 334 REMARK 465 ASP A 335 REMARK 465 PRO A 336 REMARK 465 GLY A 337 REMARK 465 TYR A 338 REMARK 465 GLU A 339 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASP B 3 REMARK 465 GLN B 4 REMARK 465 GLU B 5 REMARK 465 ALA B 6 REMARK 465 LYS B 7 REMARK 465 PRO B 8 REMARK 465 SER B 9 REMARK 465 THR B 10 REMARK 465 GLU B 11 REMARK 465 ASP B 12 REMARK 465 LEU B 13 REMARK 465 GLY B 14 REMARK 465 ASP B 15 REMARK 465 LYS B 16 REMARK 465 LYS B 17 REMARK 465 GLU B 18 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 248 CG CD CE NZ REMARK 470 GLU A 331 CG CD OE1 OE2 REMARK 470 GLU A 332 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 330 C GLY B 97 1.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 197 135.11 172.47 REMARK 500 PRO A 260 121.80 -37.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 344 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 136 O REMARK 620 2 TYR A 152 OH 119.1 REMARK 620 3 THR A 190 O 63.8 134.1 REMARK 620 4 HOH A 349 O 151.2 88.7 103.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 343 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 283 O REMARK 620 2 HIS A 287 N 113.9 REMARK 620 3 HOH A 348 O 137.0 98.7 REMARK 620 4 ARG B 54 NH2 82.5 75.2 134.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 206 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 43 NE2 REMARK 620 2 HOH B 209 O 150.2 REMARK 620 3 HOH B 212 O 81.1 75.8 REMARK 620 4 HOH B 240 O 92.2 104.3 85.7 REMARK 620 5 HOH B 241 O 70.1 85.8 74.9 155.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 207 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 210 O REMARK 620 2 HOH B 211 O 86.8 REMARK 620 3 HOH B 225 O 91.1 81.9 REMARK 620 4 HOH B 227 O 97.0 70.9 151.0 REMARK 620 5 HOH B 233 O 162.0 77.7 77.8 86.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 340 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 342 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 343 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 344 DBREF 1WYW A 112 339 UNP Q13569 TDG_HUMAN 112 339 DBREF 1WYW B 1 97 UNP P63165 SUMO1_HUMAN 1 97 SEQADV 1WYW GLY A 110 UNP Q13569 CLONING ARTIFACT SEQADV 1WYW SER A 111 UNP Q13569 CLONING ARTIFACT SEQRES 1 A 230 GLY SER ASN GLY VAL SER GLU ALA GLU LEU LEU THR LYS SEQRES 2 A 230 THR LEU PRO ASP ILE LEU THR PHE ASN LEU ASP ILE VAL SEQRES 3 A 230 ILE ILE GLY ILE ASN PRO GLY LEU MET ALA ALA TYR LYS SEQRES 4 A 230 GLY HIS HIS TYR PRO GLY PRO GLY ASN HIS PHE TRP LYS SEQRES 5 A 230 CYS LEU PHE MET SER GLY LEU SER GLU VAL GLN LEU ASN SEQRES 6 A 230 HIS MET ASP ASP HIS THR LEU PRO GLY LYS TYR GLY ILE SEQRES 7 A 230 GLY PHE THR ASN MET VAL GLU ARG THR THR PRO GLY SER SEQRES 8 A 230 LYS ASP LEU SER SER LYS GLU PHE ARG GLU GLY GLY ARG SEQRES 9 A 230 ILE LEU VAL GLN LYS LEU GLN LYS TYR GLN PRO ARG ILE SEQRES 10 A 230 ALA VAL PHE ASN GLY LYS CYS ILE TYR GLU ILE PHE SER SEQRES 11 A 230 LYS GLU VAL PHE GLY VAL LYS VAL LYS ASN LEU GLU PHE SEQRES 12 A 230 GLY LEU GLN PRO HIS LYS ILE PRO ASP THR GLU THR LEU SEQRES 13 A 230 CYS TYR VAL MET PRO SER SER SER ALA ARG CYS ALA GLN SEQRES 14 A 230 PHE PRO ARG ALA GLN ASP LYS VAL HIS TYR TYR ILE LYS SEQRES 15 A 230 LEU LYS ASP LEU ARG ASP GLN LEU LYS GLY ILE GLU ARG SEQRES 16 A 230 ASN MET ASP VAL GLN GLU VAL GLN TYR THR PHE ASP LEU SEQRES 17 A 230 GLN LEU ALA GLN GLU ASP ALA LYS LYS MET ALA VAL LYS SEQRES 18 A 230 GLU GLU LYS TYR ASP PRO GLY TYR GLU SEQRES 1 B 97 MET SER ASP GLN GLU ALA LYS PRO SER THR GLU ASP LEU SEQRES 2 B 97 GLY ASP LYS LYS GLU GLY GLU TYR ILE LYS LEU LYS VAL SEQRES 3 B 97 ILE GLY GLN ASP SER SER GLU ILE HIS PHE LYS VAL LYS SEQRES 4 B 97 MET THR THR HIS LEU LYS LYS LEU LYS GLU SER TYR CYS SEQRES 5 B 97 GLN ARG GLN GLY VAL PRO MET ASN SER LEU ARG PHE LEU SEQRES 6 B 97 PHE GLU GLY GLN ARG ILE ALA ASP ASN HIS THR PRO LYS SEQRES 7 B 97 GLU LEU GLY MET GLU GLU GLU ASP VAL ILE GLU VAL TYR SEQRES 8 B 97 GLN GLU GLN THR GLY GLY HET CL A 340 1 HET CL A 341 1 HET CL A 342 1 HET MG A 343 1 HET MG A 344 1 HET NA B 204 1 HET MG B 206 1 HET MG B 207 1 HET MG B 208 1 HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION FORMUL 3 CL 3(CL 1-) FORMUL 6 MG 5(MG 2+) FORMUL 8 NA NA 1+ FORMUL 12 HOH *168(H2 O) HELIX 1 1 GLU A 118 LYS A 122 5 5 HELIX 2 2 GLY A 142 GLY A 149 1 8 HELIX 3 3 HIS A 158 SER A 166 1 9 HELIX 4 4 ASN A 174 HIS A 179 5 6 HELIX 5 5 THR A 180 GLY A 186 1 7 HELIX 6 6 GLY A 199 LEU A 203 5 5 HELIX 7 7 SER A 204 GLN A 223 1 20 HELIX 8 8 GLY A 231 VAL A 242 1 12 HELIX 9 9 ARG A 281 ASP A 284 5 4 HELIX 10 10 LYS A 285 LYS A 300 1 16 HELIX 11 11 ASP A 316 LYS A 330 1 15 HELIX 12 12 LEU B 44 GLY B 56 1 13 HELIX 13 13 PRO B 58 ASN B 60 5 3 HELIX 14 14 THR B 76 GLY B 81 1 6 SHEET 1 A 5 ILE A 187 ASN A 191 0 SHEET 2 A 5 ILE A 134 GLY A 138 1 N ILE A 136 O GLY A 188 SHEET 3 A 5 ILE A 226 ASN A 230 1 O VAL A 228 N ILE A 137 SHEET 4 A 5 LEU A 265 MET A 269 1 O LEU A 265 N ALA A 227 SHEET 5 A 5 GLY A 253 LEU A 254 -1 N GLY A 253 O VAL A 268 SHEET 1 B 6 VAL A 308 THR A 314 0 SHEET 2 B 6 GLU B 33 LYS B 39 -1 O LYS B 37 N GLN A 309 SHEET 3 B 6 TYR B 21 ILE B 27 -1 N ILE B 22 O VAL B 38 SHEET 4 B 6 VAL B 87 GLN B 92 1 O ILE B 88 N LYS B 25 SHEET 5 B 6 LEU B 62 PHE B 66 -1 N LEU B 65 O GLU B 89 SHEET 6 B 6 GLN B 69 ARG B 70 -1 O GLN B 69 N PHE B 66 LINK O ILE A 136 MG MG A 344 1555 1555 2.90 LINK OH TYR A 152 MG MG A 344 1555 1555 2.81 LINK O THR A 190 MG MG A 344 1555 1555 2.82 LINK O GLN A 283 MG MG A 343 1555 1555 2.76 LINK N HIS A 287 MG MG A 343 1555 1555 3.01 LINK MG MG A 343 O HOH A 348 1555 1555 2.77 LINK MG MG A 343 NH2 ARG B 54 1555 1555 3.00 LINK MG MG A 344 O HOH A 349 1555 1555 2.89 LINK NE2 HIS B 43 MG MG B 206 1555 1555 2.54 LINK N ASP B 73 NA NA B 204 1555 1555 3.00 LINK OG1 THR B 76 MG MG B 208 1555 1555 2.96 LINK MG MG B 206 O HOH B 209 1555 1555 2.38 LINK MG MG B 206 O HOH B 212 1555 1555 2.48 LINK MG MG B 206 O HOH B 240 1555 1555 2.50 LINK MG MG B 206 O HOH B 241 1555 1555 2.57 LINK MG MG B 207 O HOH B 210 1555 1555 2.20 LINK MG MG B 207 O HOH B 211 1555 1555 2.40 LINK MG MG B 207 O HOH B 225 1555 1555 2.16 LINK MG MG B 207 O HOH B 227 1555 1555 2.83 LINK MG MG B 207 O HOH B 233 1555 1555 2.53 CISPEP 1 GLY A 154 PRO A 155 0 -0.02 SITE 1 AC1 3 LYS A 232 SER A 271 HOH A 450 SITE 1 AC2 2 GLY A 154 HIS A 175 SITE 1 AC3 2 LEU A 120 LEU A 254 SITE 1 AC4 4 LYS A 246 HOH A 477 LYS B 48 ASP B 73 SITE 1 AC5 8 GLN A 283 ASP A 284 LYS A 285 VAL A 286 SITE 2 AC5 8 HIS A 287 TYR A 313 HOH A 348 ARG B 54 SITE 1 AC6 5 HIS B 43 HOH B 209 HOH B 212 HOH B 240 SITE 2 AC6 5 HOH B 241 SITE 1 AC7 5 HOH B 210 HOH B 211 HOH B 225 HOH B 227 SITE 2 AC7 5 HOH B 233 SITE 1 AC8 1 THR B 76 SITE 1 AC9 6 ILE A 136 GLY A 138 TYR A 152 THR A 190 SITE 2 AC9 6 ASN A 191 HOH A 349 CRYST1 42.212 70.420 106.434 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023690 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014201 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009395 0.00000