HEADER TRANSFERASE 08-MAR-05 1WZN TITLE CRYSTAL STRUCTURE OF THE SAM-DEPENDENT METHYLTRANSFERASE FROM TITLE 2 PYROCOCCUS HORIKOSHII OT3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SAM-DEPENDENT METHYLTRANSFERASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: 252AA LONG HYPOTHETICAL PROTEIN; COMPND 5 EC: 2.1.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: OT3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS (DE3)-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS SAM-DEPENDENT METHYLTRANSFERASE, STRUCTURAL GENOMICS, RIKEN KEYWDS 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.MIZUTANI,N.KUNISHIMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 4 13-MAR-24 1WZN 1 REMARK LINK REVDAT 3 13-JUL-11 1WZN 1 VERSN REVDAT 2 24-FEB-09 1WZN 1 VERSN REVDAT 1 14-MAR-06 1WZN 0 JRNL AUTH H.MIZUTANI,N.KUNISHIMA JRNL TITL CRYSTAL STRUCTURE OF THE SAM-DEPENDENT METHYLTRANSFERASE JRNL TITL 2 FROM PYROCOCCUS HORIKOSHII OT3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3810079.490 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 81783 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4124 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 12361 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 647 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.011 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6099 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 615 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.00000 REMARK 3 B22 (A**2) : 3.56000 REMARK 3 B33 (A**2) : -2.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : 0.16 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.22 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.770 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.330 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.930 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.210 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.410 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 44.42 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : SAH.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : SAH.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1WZN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000024194. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0, 0.979480, 0.979085 REMARK 200 MONOCHROMATOR : BENDING MAGNET REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS V REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81819 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.120 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : 0.06200 REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.07 REMARK 200 R MERGE FOR SHELL (I) : 0.35200 REMARK 200 R SYM FOR SHELL (I) : 0.32100 REMARK 200 FOR SHELL : 5.670 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, MAGNESIUM SULFATE, PH 5.9, REMARK 280 MICROBATCH, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.99550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.99550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 54.17850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.00550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 54.17850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.00550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.99550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 54.17850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 66.00550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.99550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 54.17850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 66.00550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HEXAMER GENERATED FROM THE REMARK 300 TRIMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: X, 1-Y, 1-Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 14170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -123.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 132.01100 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 145.99100 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1204 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TRP A 148 REMARK 465 PHE A 149 REMARK 465 TYR A 150 REMARK 465 GLY A 151 REMARK 465 GLY A 152 REMARK 465 ARG A 153 REMARK 465 ASP A 154 REMARK 465 PHE A 252 REMARK 465 TRP B 148 REMARK 465 PHE B 149 REMARK 465 TYR B 150 REMARK 465 GLY B 151 REMARK 465 GLY B 152 REMARK 465 ARG B 153 REMARK 465 ASP B 154 REMARK 465 PHE B 252 REMARK 465 TRP C 148 REMARK 465 PHE C 149 REMARK 465 TYR C 150 REMARK 465 GLY C 151 REMARK 465 GLY C 152 REMARK 465 ARG C 153 REMARK 465 ASP C 154 REMARK 465 PHE C 252 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 214 OG1 THR B 211 4566 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 6 -82.04 -119.71 REMARK 500 TYR A 16 45.18 -108.17 REMARK 500 PHE A 113 59.45 71.49 REMARK 500 SER A 114 16.39 59.81 REMARK 500 THR B 6 -81.19 -120.84 REMARK 500 ASP B 204 88.88 -150.79 REMARK 500 THR C 6 -83.93 -121.61 REMARK 500 TYR C 16 42.59 -106.47 REMARK 500 ARG C 234 47.43 -77.02 REMARK 500 PRO C 238 -37.64 -39.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1007 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 120 OD2 REMARK 620 2 HOH A1062 O 81.9 REMARK 620 3 HOH A1181 O 97.4 99.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH C 1003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PHO001001305.1 RELATED DB: TARGETDB DBREF 1WZN A 1 252 GB 3257726 BAA30409 1 252 DBREF 1WZN B 1 252 GB 3257726 BAA30409 1 252 DBREF 1WZN C 1 252 GB 3257726 BAA30409 1 252 SEQRES 1 A 252 MET TYR GLU LEU TYR THR LEU LEU ALA GLU TYR TYR ASP SEQRES 2 A 252 THR ILE TYR ARG ARG ARG ILE GLU ARG VAL LYS ALA GLU SEQRES 3 A 252 ILE ASP PHE VAL GLU GLU ILE PHE LYS GLU ASP ALA LYS SEQRES 4 A 252 ARG GLU VAL ARG ARG VAL LEU ASP LEU ALA CYS GLY THR SEQRES 5 A 252 GLY ILE PRO THR LEU GLU LEU ALA GLU ARG GLY TYR GLU SEQRES 6 A 252 VAL VAL GLY LEU ASP LEU HIS GLU GLU MET LEU ARG VAL SEQRES 7 A 252 ALA ARG ARG LYS ALA LYS GLU ARG ASN LEU LYS ILE GLU SEQRES 8 A 252 PHE LEU GLN GLY ASP VAL LEU GLU ILE ALA PHE LYS ASN SEQRES 9 A 252 GLU PHE ASP ALA VAL THR MET PHE PHE SER THR ILE MET SEQRES 10 A 252 TYR PHE ASP GLU GLU ASP LEU ARG LYS LEU PHE SER LYS SEQRES 11 A 252 VAL ALA GLU ALA LEU LYS PRO GLY GLY VAL PHE ILE THR SEQRES 12 A 252 ASP PHE PRO CYS TRP PHE TYR GLY GLY ARG ASP GLY PRO SEQRES 13 A 252 VAL VAL TRP ASN GLU GLN LYS GLY GLU GLU LYS LEU VAL SEQRES 14 A 252 ILE MET ASP TRP ARG GLU VAL GLU PRO ALA VAL GLN LYS SEQRES 15 A 252 LEU ARG PHE LYS ARG LEU VAL GLN ILE LEU ARG PRO ASN SEQRES 16 A 252 GLY GLU VAL LYS ALA PHE LEU VAL ASP ASP GLU LEU ASN SEQRES 17 A 252 ILE TYR THR PRO ARG GLU VAL ARG LEU LEU ALA GLU LYS SEQRES 18 A 252 TYR PHE GLU LYS VAL LYS ILE TYR GLY ASN LEU LYS ARG SEQRES 19 A 252 GLU LEU SER PRO ASN ASP MET ARG TYR TRP ILE VAL GLY SEQRES 20 A 252 ILE ALA LYS SER PHE SEQRES 1 B 252 MET TYR GLU LEU TYR THR LEU LEU ALA GLU TYR TYR ASP SEQRES 2 B 252 THR ILE TYR ARG ARG ARG ILE GLU ARG VAL LYS ALA GLU SEQRES 3 B 252 ILE ASP PHE VAL GLU GLU ILE PHE LYS GLU ASP ALA LYS SEQRES 4 B 252 ARG GLU VAL ARG ARG VAL LEU ASP LEU ALA CYS GLY THR SEQRES 5 B 252 GLY ILE PRO THR LEU GLU LEU ALA GLU ARG GLY TYR GLU SEQRES 6 B 252 VAL VAL GLY LEU ASP LEU HIS GLU GLU MET LEU ARG VAL SEQRES 7 B 252 ALA ARG ARG LYS ALA LYS GLU ARG ASN LEU LYS ILE GLU SEQRES 8 B 252 PHE LEU GLN GLY ASP VAL LEU GLU ILE ALA PHE LYS ASN SEQRES 9 B 252 GLU PHE ASP ALA VAL THR MET PHE PHE SER THR ILE MET SEQRES 10 B 252 TYR PHE ASP GLU GLU ASP LEU ARG LYS LEU PHE SER LYS SEQRES 11 B 252 VAL ALA GLU ALA LEU LYS PRO GLY GLY VAL PHE ILE THR SEQRES 12 B 252 ASP PHE PRO CYS TRP PHE TYR GLY GLY ARG ASP GLY PRO SEQRES 13 B 252 VAL VAL TRP ASN GLU GLN LYS GLY GLU GLU LYS LEU VAL SEQRES 14 B 252 ILE MET ASP TRP ARG GLU VAL GLU PRO ALA VAL GLN LYS SEQRES 15 B 252 LEU ARG PHE LYS ARG LEU VAL GLN ILE LEU ARG PRO ASN SEQRES 16 B 252 GLY GLU VAL LYS ALA PHE LEU VAL ASP ASP GLU LEU ASN SEQRES 17 B 252 ILE TYR THR PRO ARG GLU VAL ARG LEU LEU ALA GLU LYS SEQRES 18 B 252 TYR PHE GLU LYS VAL LYS ILE TYR GLY ASN LEU LYS ARG SEQRES 19 B 252 GLU LEU SER PRO ASN ASP MET ARG TYR TRP ILE VAL GLY SEQRES 20 B 252 ILE ALA LYS SER PHE SEQRES 1 C 252 MET TYR GLU LEU TYR THR LEU LEU ALA GLU TYR TYR ASP SEQRES 2 C 252 THR ILE TYR ARG ARG ARG ILE GLU ARG VAL LYS ALA GLU SEQRES 3 C 252 ILE ASP PHE VAL GLU GLU ILE PHE LYS GLU ASP ALA LYS SEQRES 4 C 252 ARG GLU VAL ARG ARG VAL LEU ASP LEU ALA CYS GLY THR SEQRES 5 C 252 GLY ILE PRO THR LEU GLU LEU ALA GLU ARG GLY TYR GLU SEQRES 6 C 252 VAL VAL GLY LEU ASP LEU HIS GLU GLU MET LEU ARG VAL SEQRES 7 C 252 ALA ARG ARG LYS ALA LYS GLU ARG ASN LEU LYS ILE GLU SEQRES 8 C 252 PHE LEU GLN GLY ASP VAL LEU GLU ILE ALA PHE LYS ASN SEQRES 9 C 252 GLU PHE ASP ALA VAL THR MET PHE PHE SER THR ILE MET SEQRES 10 C 252 TYR PHE ASP GLU GLU ASP LEU ARG LYS LEU PHE SER LYS SEQRES 11 C 252 VAL ALA GLU ALA LEU LYS PRO GLY GLY VAL PHE ILE THR SEQRES 12 C 252 ASP PHE PRO CYS TRP PHE TYR GLY GLY ARG ASP GLY PRO SEQRES 13 C 252 VAL VAL TRP ASN GLU GLN LYS GLY GLU GLU LYS LEU VAL SEQRES 14 C 252 ILE MET ASP TRP ARG GLU VAL GLU PRO ALA VAL GLN LYS SEQRES 15 C 252 LEU ARG PHE LYS ARG LEU VAL GLN ILE LEU ARG PRO ASN SEQRES 16 C 252 GLY GLU VAL LYS ALA PHE LEU VAL ASP ASP GLU LEU ASN SEQRES 17 C 252 ILE TYR THR PRO ARG GLU VAL ARG LEU LEU ALA GLU LYS SEQRES 18 C 252 TYR PHE GLU LYS VAL LYS ILE TYR GLY ASN LEU LYS ARG SEQRES 19 C 252 GLU LEU SER PRO ASN ASP MET ARG TYR TRP ILE VAL GLY SEQRES 20 C 252 ILE ALA LYS SER PHE HET SO4 A1004 5 HET MG A1007 1 HET SAH A1001 26 HET SO4 B1005 5 HET SAH B1002 26 HET SO4 C1006 5 HET SAH C1003 26 HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 4 SO4 3(O4 S 2-) FORMUL 5 MG MG 2+ FORMUL 6 SAH 3(C14 H20 N6 O5 S) FORMUL 11 HOH *615(H2 O) HELIX 1 1 TYR A 2 THR A 6 5 5 HELIX 2 2 LEU A 8 GLU A 10 5 3 HELIX 3 3 TYR A 11 TYR A 16 1 6 HELIX 4 4 TYR A 16 ARG A 22 1 7 HELIX 5 5 ARG A 22 ASP A 37 1 16 HELIX 6 6 GLY A 53 ARG A 62 1 10 HELIX 7 7 HIS A 72 ARG A 86 1 15 HELIX 8 8 ASP A 96 ILE A 100 5 5 HELIX 9 9 SER A 114 PHE A 119 5 6 HELIX 10 10 ASP A 120 ALA A 134 1 15 HELIX 11 11 THR A 211 GLU A 220 1 10 HELIX 12 12 TYR B 2 THR B 6 5 5 HELIX 13 13 LEU B 8 GLU B 10 5 3 HELIX 14 14 TYR B 11 TYR B 16 1 6 HELIX 15 15 TYR B 16 ARG B 22 1 7 HELIX 16 16 ARG B 22 ASP B 37 1 16 HELIX 17 17 GLY B 53 ARG B 62 1 10 HELIX 18 18 HIS B 72 ARG B 86 1 15 HELIX 19 19 ASP B 96 ILE B 100 5 5 HELIX 20 20 SER B 114 PHE B 119 5 6 HELIX 21 21 ASP B 120 ALA B 134 1 15 HELIX 22 22 THR B 211 LYS B 221 1 11 HELIX 23 23 TYR C 2 THR C 6 5 5 HELIX 24 24 LEU C 8 GLU C 10 5 3 HELIX 25 25 TYR C 11 TYR C 16 1 6 HELIX 26 26 TYR C 16 ARG C 22 1 7 HELIX 27 27 ARG C 22 ASP C 37 1 16 HELIX 28 28 GLY C 53 ARG C 62 1 10 HELIX 29 29 HIS C 72 ARG C 86 1 15 HELIX 30 30 ASP C 96 ILE C 100 5 5 HELIX 31 31 SER C 114 PHE C 119 5 6 HELIX 32 32 ASP C 120 ALA C 134 1 15 HELIX 33 33 THR C 211 GLU C 220 1 10 SHEET 1 A 7 GLU A 91 GLN A 94 0 SHEET 2 A 7 GLU A 65 ASP A 70 1 N GLY A 68 O LEU A 93 SHEET 3 A 7 ARG A 44 LEU A 48 1 N ASP A 47 O VAL A 67 SHEET 4 A 7 PHE A 106 MET A 111 1 O THR A 110 N LEU A 48 SHEET 5 A 7 LEU A 135 PRO A 146 1 O LYS A 136 N PHE A 106 SHEET 6 A 7 ARG A 242 ILE A 248 -1 O TYR A 243 N PHE A 145 SHEET 7 A 7 LYS A 225 GLY A 230 -1 N LYS A 225 O ILE A 248 SHEET 1 B 4 VAL A 157 LYS A 163 0 SHEET 2 B 4 GLU A 166 GLU A 177 -1 O ILE A 170 N TRP A 159 SHEET 3 B 4 LYS A 182 LEU A 192 -1 O LEU A 192 N LYS A 167 SHEET 4 B 4 VAL A 198 ASN A 208 -1 O LEU A 207 N LEU A 183 SHEET 1 C 7 GLU B 91 GLN B 94 0 SHEET 2 C 7 GLU B 65 ASP B 70 1 N GLY B 68 O LEU B 93 SHEET 3 C 7 ARG B 44 LEU B 48 1 N ASP B 47 O VAL B 67 SHEET 4 C 7 PHE B 106 MET B 111 1 O THR B 110 N LEU B 46 SHEET 5 C 7 LEU B 135 PRO B 146 1 O ILE B 142 N VAL B 109 SHEET 6 C 7 ARG B 242 ILE B 248 -1 O TYR B 243 N PHE B 145 SHEET 7 C 7 LYS B 225 GLY B 230 -1 N LYS B 225 O ILE B 248 SHEET 1 D 4 VAL B 157 LYS B 163 0 SHEET 2 D 4 GLU B 166 GLU B 177 -1 O ILE B 170 N TRP B 159 SHEET 3 D 4 LYS B 182 LEU B 192 -1 O LEU B 192 N LYS B 167 SHEET 4 D 4 VAL B 198 ASN B 208 -1 O LEU B 207 N LEU B 183 SHEET 1 E 7 GLU C 91 GLN C 94 0 SHEET 2 E 7 GLU C 65 ASP C 70 1 N GLY C 68 O LEU C 93 SHEET 3 E 7 ARG C 44 LEU C 48 1 N VAL C 45 O GLU C 65 SHEET 4 E 7 PHE C 106 MET C 111 1 O THR C 110 N LEU C 48 SHEET 5 E 7 LEU C 135 PRO C 146 1 O VAL C 140 N VAL C 109 SHEET 6 E 7 ARG C 242 ILE C 248 -1 O TYR C 243 N PHE C 145 SHEET 7 E 7 LYS C 225 GLY C 230 -1 N LYS C 225 O ILE C 248 SHEET 1 F 4 VAL C 157 LYS C 163 0 SHEET 2 F 4 GLU C 166 GLU C 177 -1 O LEU C 168 N GLU C 161 SHEET 3 F 4 LYS C 182 LEU C 192 -1 O LEU C 192 N LYS C 167 SHEET 4 F 4 VAL C 198 ASN C 208 -1 O LEU C 207 N LEU C 183 LINK OD2 ASP A 120 MG MG A1007 1555 1555 2.37 LINK MG MG A1007 O HOH A1062 1555 1555 2.00 LINK MG MG A1007 O HOH A1181 1555 1555 2.10 CISPEP 1 GLY C 155 PRO C 156 0 0.00 SITE 1 AC1 5 ARG A 77 ARG A 81 HOH A1035 HOH A1132 SITE 2 AC1 5 HOH A1229 SITE 1 AC2 5 ARG B 77 ARG B 81 HOH B1023 HOH B1082 SITE 2 AC2 5 HOH B1192 SITE 1 AC3 5 ARG C 77 ARG C 81 HOH C1034 HOH C1125 SITE 2 AC3 5 HOH C1132 SITE 1 AC4 3 ASP A 120 HOH A1062 HOH A1181 SITE 1 AC5 22 TYR A 5 TYR A 12 ARG A 19 ALA A 49 SITE 2 AC5 22 CYS A 50 GLY A 51 PRO A 55 ASP A 70 SITE 3 AC5 22 LEU A 71 HIS A 72 MET A 75 GLY A 95 SITE 4 AC5 22 ASP A 96 VAL A 97 PHE A 112 PHE A 113 SITE 5 AC5 22 THR A 115 PHE A 119 HOH A1008 HOH A1009 SITE 6 AC5 22 HOH A1010 HOH A1060 SITE 1 AC6 23 TYR B 5 TYR B 12 ARG B 19 ALA B 49 SITE 2 AC6 23 CYS B 50 GLY B 51 PRO B 55 ASP B 70 SITE 3 AC6 23 LEU B 71 HIS B 72 MET B 75 GLY B 95 SITE 4 AC6 23 ASP B 96 VAL B 97 PHE B 112 PHE B 113 SITE 5 AC6 23 THR B 115 PHE B 119 HOH B1006 HOH B1008 SITE 6 AC6 23 HOH B1013 HOH B1094 HOH B1098 SITE 1 AC7 23 TYR C 5 TYR C 12 ARG C 19 ALA C 49 SITE 2 AC7 23 CYS C 50 GLY C 51 PRO C 55 ASP C 70 SITE 3 AC7 23 LEU C 71 HIS C 72 MET C 75 GLY C 95 SITE 4 AC7 23 ASP C 96 VAL C 97 PHE C 112 PHE C 113 SITE 5 AC7 23 THR C 115 PHE C 119 HOH C1007 HOH C1008 SITE 6 AC7 23 HOH C1023 HOH C1049 HOH C1105 CRYST1 108.357 132.011 145.991 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009229 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007575 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006850 0.00000 CONECT 1008 6111 CONECT 6106 6107 6108 6109 6110 CONECT 6107 6106 CONECT 6108 6106 CONECT 6109 6106 CONECT 6110 6106 CONECT 6111 1008 6254 6373 CONECT 6112 6113 CONECT 6113 6112 6114 6117 CONECT 6114 6113 6115 CONECT 6115 6114 6116 CONECT 6116 6115 6120 CONECT 6117 6113 6118 6119 CONECT 6118 6117 CONECT 6119 6117 CONECT 6120 6116 6121 CONECT 6121 6120 6122 6123 CONECT 6122 6121 6127 CONECT 6123 6121 6124 6125 CONECT 6124 6123 CONECT 6125 6123 6126 6127 CONECT 6126 6125 CONECT 6127 6122 6125 6128 CONECT 6128 6127 6129 6137 CONECT 6129 6128 6130 CONECT 6130 6129 6131 CONECT 6131 6130 6132 6137 CONECT 6132 6131 6133 6134 CONECT 6133 6132 CONECT 6134 6132 6135 CONECT 6135 6134 6136 CONECT 6136 6135 6137 CONECT 6137 6128 6131 6136 CONECT 6138 6139 6140 6141 6142 CONECT 6139 6138 CONECT 6140 6138 CONECT 6141 6138 CONECT 6142 6138 CONECT 6143 6144 CONECT 6144 6143 6145 6148 CONECT 6145 6144 6146 CONECT 6146 6145 6147 CONECT 6147 6146 6151 CONECT 6148 6144 6149 6150 CONECT 6149 6148 CONECT 6150 6148 CONECT 6151 6147 6152 CONECT 6152 6151 6153 6154 CONECT 6153 6152 6158 CONECT 6154 6152 6155 6156 CONECT 6155 6154 CONECT 6156 6154 6157 6158 CONECT 6157 6156 CONECT 6158 6153 6156 6159 CONECT 6159 6158 6160 6168 CONECT 6160 6159 6161 CONECT 6161 6160 6162 CONECT 6162 6161 6163 6168 CONECT 6163 6162 6164 6165 CONECT 6164 6163 CONECT 6165 6163 6166 CONECT 6166 6165 6167 CONECT 6167 6166 6168 CONECT 6168 6159 6162 6167 CONECT 6169 6170 6171 6172 6173 CONECT 6170 6169 CONECT 6171 6169 CONECT 6172 6169 CONECT 6173 6169 CONECT 6174 6175 CONECT 6175 6174 6176 6179 CONECT 6176 6175 6177 CONECT 6177 6176 6178 CONECT 6178 6177 6182 CONECT 6179 6175 6180 6181 CONECT 6180 6179 CONECT 6181 6179 CONECT 6182 6178 6183 CONECT 6183 6182 6184 6185 CONECT 6184 6183 6189 CONECT 6185 6183 6186 6187 CONECT 6186 6185 CONECT 6187 6185 6188 6189 CONECT 6188 6187 CONECT 6189 6184 6187 6190 CONECT 6190 6189 6191 6199 CONECT 6191 6190 6192 CONECT 6192 6191 6193 CONECT 6193 6192 6194 6199 CONECT 6194 6193 6195 6196 CONECT 6195 6194 CONECT 6196 6194 6197 CONECT 6197 6196 6198 CONECT 6198 6197 6199 CONECT 6199 6190 6193 6198 CONECT 6254 6111 CONECT 6373 6111 MASTER 371 0 7 33 33 0 25 6 6808 3 97 60 END