HEADER OXIDOREDUCTASE 16-MAR-05 1X0A TITLE CRYSTAL STRUCTURE OF TYPE II MALATE/LACTATE DEHYDROGENASE FROM THERMUS TITLE 2 THERMOPHILUS HB8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALATE/L-LACTATE DEHYDROGENASE FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MALATE/LACTATE DEHYDROGENASE; COMPND 5 EC: 1.1.1.27; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS MALATE DEHYDROGENASE, STRUCTURAL GENOMICS, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.MIZUTANI,N.KUNISHIMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 4 25-OCT-23 1X0A 1 REMARK LINK REVDAT 3 13-JUL-11 1X0A 1 VERSN REVDAT 2 24-FEB-09 1X0A 1 VERSN REVDAT 1 07-MAR-06 1X0A 0 JRNL AUTH H.MIZUTANI,N.KUNISHIMA JRNL TITL CRYSTAL STRUCTURE OF TYPE II MALATE/LACTATE DEHYDROGENASE JRNL TITL 2 FROM THERMUS THERMOPHILUS HB8 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 5024323.530 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 48680 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2424 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7589 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 404 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.013 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2612 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 272 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.12 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.15 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.790 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.160 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.700 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.050 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.170 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.42 REMARK 3 BSOL : 67.01 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : FMT.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : FMT.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1X0A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000024217. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : BENDING MAGNET REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS V REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48689 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.570 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : 0.05500 REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.94 REMARK 200 R MERGE FOR SHELL (I) : 0.41100 REMARK 200 R SYM FOR SHELL (I) : 0.38600 REMARK 200 FOR SHELL : 5.940 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1VBI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM FORMATE, PH 7.4, MICROBATCH, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 81.62500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.62500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 81.62500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.62500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 81.62500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 81.62500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 81.62500 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 81.62500 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 81.62500 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 81.62500 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 81.62500 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 81.62500 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 81.62500 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 81.62500 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 81.62500 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 81.62500 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 81.62500 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 81.62500 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 81.62500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 81.62500 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 81.62500 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 81.62500 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 81.62500 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 81.62500 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 81.62500 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 81.62500 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 81.62500 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 81.62500 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 81.62500 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 81.62500 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 81.62500 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 81.62500 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 81.62500 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 81.62500 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 81.62500 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 81.62500 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER GENERATED BY THE REMARK 300 OPERATION: X, -Y, -Z-1/2 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -81.62500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 402 LIES ON A SPECIAL POSITION. REMARK 375 NA NA A 404 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 619 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 626 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 658 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 41 67.33 -102.11 REMARK 500 LEU A 67 61.72 61.83 REMARK 500 ASP A 142 -6.03 -140.67 REMARK 500 ASN A 156 79.15 21.08 REMARK 500 ALA A 243 -116.08 44.58 REMARK 500 PHE A 271 -115.99 -111.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 57 OE2 REMARK 620 2 GLU A 57 OE2 98.4 REMARK 620 3 GLU A 57 OE2 98.4 98.4 REMARK 620 4 HOH A 619 O 119.0 119.0 119.0 REMARK 620 5 HOH A 619 O 119.0 119.0 119.0 0.0 REMARK 620 6 HOH A 619 O 119.0 119.0 119.0 0.0 0.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 172 O REMARK 620 2 HOH A 493 O 80.1 REMARK 620 3 HOH A 516 O 76.1 119.0 REMARK 620 4 HOH A 522 O 122.4 90.6 148.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 423 O REMARK 620 2 HOH A 423 O 95.4 REMARK 620 3 HOH A 423 O 95.4 95.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1VBI RELATED DB: PDB REMARK 900 THE SAME ENZYME COMPLEXED WITH NAD REMARK 900 RELATED ID: TTK003001327.2 RELATED DB: TARGETDB DBREF 1X0A A 1 344 UNP Q53W84 Q53W84_THET8 1 344 SEQRES 1 A 344 MET ARG TRP ARG ALA ASP PHE LEU SER ALA TRP ALA GLU SEQRES 2 A 344 ALA LEU LEU ARG LYS ALA GLY ALA ASP GLU PRO SER ALA SEQRES 3 A 344 LYS ALA VAL ALA TRP ALA LEU VAL GLU ALA ASP LEU ARG SEQRES 4 A 344 GLY VAL GLY SER HIS GLY LEU LEU ARG LEU PRO VAL TYR SEQRES 5 A 344 VAL ARG ARG LEU GLU ALA GLY LEU VAL ASN PRO SER PRO SEQRES 6 A 344 THR LEU PRO LEU GLU GLU ARG GLY PRO VAL ALA LEU LEU SEQRES 7 A 344 ASP GLY GLU HIS GLY PHE GLY PRO ARG VAL ALA LEU LYS SEQRES 8 A 344 ALA VAL GLU ALA ALA GLN SER LEU ALA ARG ARG HIS GLY SEQRES 9 A 344 LEU GLY ALA VAL GLY VAL ARG ARG SER THR HIS PHE GLY SEQRES 10 A 344 MET ALA GLY LEU TYR ALA GLU LYS LEU ALA ARG GLU GLY SEQRES 11 A 344 PHE VAL ALA TRP VAL THR THR ASN ALA GLU PRO ASP VAL SEQRES 12 A 344 VAL PRO PHE GLY GLY ARG GLU LYS ALA LEU GLY THR ASN SEQRES 13 A 344 PRO LEU ALA PHE ALA ALA PRO ALA PRO GLN GLY ILE LEU SEQRES 14 A 344 VAL ALA ASP LEU ALA THR SER GLU SER ALA MET GLY LYS SEQRES 15 A 344 VAL PHE LEU ALA ARG GLU LYS GLY GLU ARG ILE PRO PRO SEQRES 16 A 344 SER TRP GLY VAL ASP ARG GLU GLY SER PRO THR ASP ASP SEQRES 17 A 344 PRO HIS ARG VAL TYR ALA LEU ARG PRO LEU GLY GLY PRO SEQRES 18 A 344 LYS GLY TYR ALA LEU ALA LEU LEU VAL GLU VAL LEU SER SEQRES 19 A 344 GLY VAL LEU THR GLY ALA GLY VAL ALA HIS GLY ILE GLY SEQRES 20 A 344 ARG MET TYR ASP GLU TRP ASP ARG PRO GLN ASP VAL GLY SEQRES 21 A 344 HIS PHE LEU LEU ALA LEU ASP PRO GLY ARG PHE VAL GLY SEQRES 22 A 344 LYS GLU ALA PHE LEU GLU ARG MET GLY ALA LEU TRP GLN SEQRES 23 A 344 ALA LEU LYS ALA THR PRO PRO ALA PRO GLY HIS GLU GLU SEQRES 24 A 344 VAL PHE LEU PRO GLY GLU LEU GLU ALA ARG ARG ARG GLU SEQRES 25 A 344 ARG ALA LEU ALA GLU GLY MET ALA LEU PRO GLU ARG VAL SEQRES 26 A 344 VAL ALA GLU LEU LYS ALA LEU GLY GLU ARG TYR GLY VAL SEQRES 27 A 344 PRO TRP ARG ASP ASP ALA HET NA A 402 1 HET NA A 403 1 HET NA A 404 1 HET FMT A 401 3 HETNAM NA SODIUM ION HETNAM FMT FORMIC ACID FORMUL 2 NA 3(NA 1+) FORMUL 5 FMT C H2 O2 FORMUL 6 HOH *272(H2 O) HELIX 1 1 ARG A 4 GLY A 20 1 17 HELIX 2 2 ASP A 22 ARG A 39 1 18 HELIX 3 3 VAL A 41 LEU A 47 5 7 HELIX 4 4 ARG A 48 ALA A 58 1 11 HELIX 5 5 PHE A 84 GLY A 104 1 21 HELIX 6 6 MET A 118 ARG A 128 1 11 HELIX 7 7 ALA A 179 GLY A 190 1 12 HELIX 8 8 ASP A 208 VAL A 212 5 5 HELIX 9 9 GLY A 220 GLY A 235 1 16 HELIX 10 10 VAL A 242 ILE A 246 5 5 HELIX 11 11 PRO A 268 PHE A 271 5 4 HELIX 12 12 GLY A 273 ALA A 290 1 18 HELIX 13 13 GLY A 304 GLY A 318 1 15 HELIX 14 14 PRO A 322 TYR A 336 1 15 SHEET 1 A 2 ARG A 2 TRP A 3 0 SHEET 2 A 2 MET A 319 ALA A 320 -1 O MET A 319 N TRP A 3 SHEET 1 B 7 LEU A 69 ARG A 72 0 SHEET 2 B 7 VAL A 75 ASP A 79 -1 O VAL A 75 N ARG A 72 SHEET 3 B 7 LEU A 105 SER A 113 1 O GLY A 109 N ALA A 76 SHEET 4 B 7 VAL A 259 LEU A 266 -1 O HIS A 261 N VAL A 110 SHEET 5 B 7 VAL A 132 THR A 137 -1 N THR A 136 O PHE A 262 SHEET 6 B 7 LEU A 158 ALA A 164 -1 O ALA A 161 N ALA A 133 SHEET 7 B 7 GLY A 167 LEU A 173 -1 O ALA A 171 N PHE A 160 SHEET 1 C 2 GLY A 198 VAL A 199 0 SHEET 2 C 2 ALA A 214 LEU A 215 -1 O ALA A 214 N VAL A 199 LINK OE2 GLU A 57 NA NA A 404 1555 1555 2.34 LINK OE2 GLU A 57 NA NA A 404 5555 1555 2.34 LINK OE2 GLU A 57 NA NA A 404 9555 1555 2.34 LINK O ASP A 172 NA NA A 403 1555 1555 2.32 LINK NA NA A 402 O HOH A 423 1555 1555 2.29 LINK NA NA A 402 O HOH A 423 1555 5555 2.29 LINK NA NA A 402 O HOH A 423 1555 9555 2.29 LINK NA NA A 403 O HOH A 493 1555 1555 2.73 LINK NA NA A 403 O HOH A 516 1555 1555 2.48 LINK NA NA A 403 O HOH A 522 1555 1555 2.45 LINK NA NA A 404 O HOH A 619 1555 1555 2.24 LINK NA NA A 404 O HOH A 619 1555 5555 2.24 LINK NA NA A 404 O HOH A 619 1555 9555 2.24 SITE 1 AC1 1 HOH A 423 SITE 1 AC2 4 ASP A 172 HOH A 493 HOH A 516 HOH A 522 SITE 1 AC3 2 GLU A 57 HOH A 619 SITE 1 AC4 8 LEU A 173 ALA A 174 SER A 178 ALA A 179 SITE 2 AC4 8 LYS A 182 LYS A 222 HOH A 516 HOH A 639 CRYST1 163.250 163.250 163.250 90.00 90.00 90.00 I 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006126 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006126 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006126 0.00000