HEADER PEPTIDE BINDING PROTEIN 24-MAR-05 1X0N TITLE NMR STRUCTURE OF GROWTH FACTOR RECEPTOR BINDING PROTEIN SH2 DOMAIN TITLE 2 COMPLEXED WITH THE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROWTH FACTOR RECEPTOR-BOUND PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH2 DOMAIN; COMPND 5 SYNONYM: GRB2, GRB2 ADAPTER PROTEIN, SH2/SH3 ADAPTER GRB2, ASH COMPND 6 PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-2 KEYWDS PEPTIDE BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.OGURA,T.SHIGA,S.YUZAWA,M.YOKOCHI,T.R.BURKE,F.INAGAKI REVDAT 4 29-MAY-24 1X0N 1 REMARK REVDAT 3 02-MAR-22 1X0N 1 REMARK SEQADV REVDAT 2 24-FEB-09 1X0N 1 VERSN REVDAT 1 19-APR-05 1X0N 0 JRNL AUTH K.OGURA,T.SHIGA,S.YUZAWA,M.YOKOCHI,T.R.BURKE,F.INAGAKI JRNL TITL NMR STRUCTURE OF GROWTH FACTOR RECEPTOR BINDING PROTEIN SH2 JRNL TITL 2 DOMAIN COMPLEXED WITH THE INHIBITOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CYANA REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1X0N COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000024230. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1MM SH2 U-13C, 15N; 20MM SODIUM REMARK 210 PHOSPHATE; 150MM NACL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, SPARKY REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 56 REMARK 465 SER A 57 REMARK 465 HIS A 58 REMARK 465 PRO A 59 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 77 -173.20 -61.69 REMARK 500 1 ALA A 115 -62.85 -170.34 REMARK 500 1 LEU A 120 -71.39 -125.85 REMARK 500 1 SER A 139 160.34 -42.01 REMARK 500 1 VAL A 140 -36.31 -142.77 REMARK 500 1 ASN A 143 -49.31 -130.45 REMARK 500 1 GLN A 153 163.23 -43.80 REMARK 500 2 LYS A 64 90.79 -64.50 REMARK 500 2 HIS A 79 -171.77 -62.74 REMARK 500 2 SER A 88 174.30 -58.13 REMARK 500 2 ALA A 115 -58.25 -173.20 REMARK 500 2 LEU A 120 -88.51 -120.49 REMARK 500 2 TRP A 121 19.65 -159.25 REMARK 500 2 VAL A 122 -41.53 -145.29 REMARK 500 2 SER A 139 159.34 -39.19 REMARK 500 2 VAL A 140 -37.24 -135.26 REMARK 500 2 ARG A 142 32.56 -87.09 REMARK 500 2 ASN A 143 -53.01 -131.49 REMARK 500 3 LYS A 64 85.03 69.05 REMARK 500 3 ASP A 113 -169.61 -100.93 REMARK 500 3 ALA A 115 -41.21 -136.53 REMARK 500 3 LEU A 120 -92.87 -125.92 REMARK 500 3 VAL A 122 -38.00 -146.65 REMARK 500 3 SER A 139 160.29 -42.80 REMARK 500 3 VAL A 140 -52.16 -131.47 REMARK 500 3 ARG A 142 33.50 -87.57 REMARK 500 3 ASN A 143 -52.14 -129.87 REMARK 500 3 GLN A 153 150.89 -35.43 REMARK 500 3 VAL A 154 138.19 -35.72 REMARK 500 3 GLN A 157 117.97 -34.41 REMARK 500 4 HIS A 79 -175.23 -62.91 REMARK 500 4 SER A 88 165.93 -44.22 REMARK 500 4 ALA A 115 -52.50 -178.59 REMARK 500 4 LEU A 120 -84.89 -138.31 REMARK 500 4 TRP A 121 -81.57 -79.46 REMARK 500 4 GLN A 153 170.35 -57.46 REMARK 500 4 GLN A 156 77.88 -157.08 REMARK 500 5 LYS A 64 97.84 -58.81 REMARK 500 5 HIS A 79 -171.44 -69.80 REMARK 500 5 ALA A 115 -20.23 161.47 REMARK 500 5 LEU A 120 -94.96 -136.30 REMARK 500 5 TRP A 121 14.95 -151.55 REMARK 500 5 VAL A 122 -31.56 -132.65 REMARK 500 5 SER A 139 160.51 -48.55 REMARK 500 5 VAL A 140 -36.38 -143.07 REMARK 500 5 ASN A 143 -51.61 -126.46 REMARK 500 5 VAL A 154 125.99 -38.37 REMARK 500 5 GLN A 156 80.34 -165.53 REMARK 500 5 GLN A 157 114.75 -171.89 REMARK 500 6 ARG A 67 -38.67 -33.41 REMARK 500 REMARK 500 THIS ENTRY HAS 201 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTF A 174 DBREF 1X0N A 58 159 UNP P62993 GRB2_HUMAN 58 159 SEQADV 1X0N GLY A 56 UNP P62993 CLONING ARTIFACT SEQADV 1X0N SER A 57 UNP P62993 CLONING ARTIFACT SEQRES 1 A 104 GLY SER HIS PRO TRP PHE PHE GLY LYS ILE PRO ARG ALA SEQRES 2 A 104 LYS ALA GLU GLU MET LEU SER LYS GLN ARG HIS ASP GLY SEQRES 3 A 104 ALA PHE LEU ILE ARG GLU SER GLU SER ALA PRO GLY ASP SEQRES 4 A 104 PHE SER LEU SER VAL LYS PHE GLY ASN ASP VAL GLN HIS SEQRES 5 A 104 PHE LYS VAL LEU ARG ASP GLY ALA GLY LYS TYR PHE LEU SEQRES 6 A 104 TRP VAL VAL LYS PHE ASN SER LEU ASN GLU LEU VAL ASP SEQRES 7 A 104 TYR HIS ARG SER THR SER VAL SER ARG ASN GLN GLN ILE SEQRES 8 A 104 PHE LEU ARG ASP ILE GLU GLN VAL PRO GLN GLN PRO THR HET DTF A 174 92 HETNAM DTF 4-[(10S,14S,18S)-18-(2-AMINO-2-OXOETHYL)-14-(1- HETNAM 2 DTF NAPHTHYLMETHYL)-8,17,20-TRIOXO-7,16,19- HETNAM 3 DTF TRIAZASPIRO[5.14]ICOS-11-EN-10-YL]BENZYLPHOSPHONIC HETNAM 4 DTF ACID FORMUL 2 DTF C37 H45 N4 O7 P HELIX 1 1 PRO A 66 LYS A 76 1 11 HELIX 2 2 SER A 127 THR A 138 1 12 SHEET 1 A 6 PHE A 61 PHE A 62 0 SHEET 2 A 6 PHE A 83 ARG A 86 1 O ILE A 85 N PHE A 62 SHEET 3 A 6 PHE A 95 PHE A 101 -1 O SER A 96 N ARG A 86 SHEET 4 A 6 ASP A 104 ARG A 112 -1 O ASP A 104 N PHE A 101 SHEET 5 A 6 TYR A 118 PHE A 119 -1 O PHE A 119 N LEU A 111 SHEET 6 A 6 LYS A 124 PHE A 125 -1 O PHE A 125 N TYR A 118 SITE 1 AC1 8 ARG A 67 ARG A 86 GLN A 106 HIS A 107 SITE 2 AC1 8 PHE A 108 LYS A 109 LEU A 111 TRP A 121 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MODEL 11 ENDMDL MODEL 12 ENDMDL MODEL 13 ENDMDL MODEL 14 ENDMDL MODEL 15 ENDMDL MODEL 16 ENDMDL MODEL 17 ENDMDL MODEL 18 ENDMDL MODEL 19 ENDMDL MODEL 20 ENDMDL CONECT 1630 1631 1635 1639 CONECT 1631 1630 1632 1679 CONECT 1632 1631 1633 1680 CONECT 1633 1632 1634 1681 CONECT 1634 1633 1635 1682 CONECT 1635 1630 1634 1636 CONECT 1636 1635 1637 1683 CONECT 1637 1636 1638 1684 CONECT 1638 1637 1639 1685 CONECT 1639 1630 1638 1640 CONECT 1640 1639 1641 1686 1687 CONECT 1641 1640 1642 1645 1688 CONECT 1642 1641 1643 1689 1690 CONECT 1643 1642 1644 1691 CONECT 1644 1643 1667 1692 CONECT 1645 1641 1646 1693 1694 CONECT 1646 1645 1647 1695 CONECT 1647 1646 1648 1649 CONECT 1648 1647 CONECT 1649 1647 1650 1654 1696 CONECT 1650 1649 1651 1697 1698 CONECT 1651 1650 1652 1653 CONECT 1652 1651 CONECT 1653 1651 1699 1700 CONECT 1654 1649 1655 1701 CONECT 1655 1654 1656 1657 CONECT 1656 1655 CONECT 1657 1655 1658 1662 1663 CONECT 1658 1657 1659 1702 1703 CONECT 1659 1658 1660 1704 1705 CONECT 1660 1659 1661 1706 1707 CONECT 1661 1660 1662 1708 1709 CONECT 1662 1657 1661 1710 1711 CONECT 1663 1657 1664 1712 CONECT 1664 1663 1665 1666 CONECT 1665 1664 CONECT 1666 1664 1667 1713 1714 CONECT 1667 1644 1666 1668 1715 CONECT 1668 1667 1669 1671 CONECT 1669 1668 1670 1716 CONECT 1670 1669 1673 1717 CONECT 1671 1668 1672 1718 CONECT 1672 1671 1673 1719 CONECT 1673 1670 1672 1674 CONECT 1674 1673 1675 1720 1721 CONECT 1675 1674 1676 1677 1678 CONECT 1676 1675 CONECT 1677 1675 CONECT 1678 1675 CONECT 1679 1631 CONECT 1680 1632 CONECT 1681 1633 CONECT 1682 1634 CONECT 1683 1636 CONECT 1684 1637 CONECT 1685 1638 CONECT 1686 1640 CONECT 1687 1640 CONECT 1688 1641 CONECT 1689 1642 CONECT 1690 1642 CONECT 1691 1643 CONECT 1692 1644 CONECT 1693 1645 CONECT 1694 1645 CONECT 1695 1646 CONECT 1696 1649 CONECT 1697 1650 CONECT 1698 1650 CONECT 1699 1653 CONECT 1700 1653 CONECT 1701 1654 CONECT 1702 1658 CONECT 1703 1658 CONECT 1704 1659 CONECT 1705 1659 CONECT 1706 1660 CONECT 1707 1660 CONECT 1708 1661 CONECT 1709 1661 CONECT 1710 1662 CONECT 1711 1662 CONECT 1712 1663 CONECT 1713 1666 CONECT 1714 1666 CONECT 1715 1667 CONECT 1716 1669 CONECT 1717 1670 CONECT 1718 1671 CONECT 1719 1672 CONECT 1720 1674 CONECT 1721 1674 MASTER 151 0 1 2 6 0 2 6 872 1 92 8 END