HEADER OXIDOREDUCTASE 31-MAR-05 1X15 TITLE CRYSTAL STRUCTURE OF E. COLI TRANSHYDROGENASE DOMAIN I WITH BOUND NADH COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD(P) TRANSHYDROGENASE SUBUNIT ALPHA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: NAD(H)-BINDING DOMAIN; COMPND 5 SYNONYM: PYRIDINE NUCLEOTIDE TRANSHYDROGENASE SUBUNIT ALPHA, COMPND 6 NICOTINAMIDE NUCLEOTIDE TRANSHYDROGENASE SUBUNIT ALPHA; COMPND 7 EC: 1.6.1.2; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: DH5ALPHA; SOURCE 5 GENE: PNTA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDC21 KEYWDS TRANSHYDROGENASE, NAD(H)-BINDING DOMAIN, ROSSMANN FOLD, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.JOHANSSON,C.OSWALD,A.PEDERSEN,S.TORNROTH,M.OKVIST,B.G.KARLSSON, AUTHOR 2 J.RYDSTROM,U.KRENGEL REVDAT 3 13-MAR-24 1X15 1 REMARK SEQADV REVDAT 2 24-FEB-09 1X15 1 VERSN REVDAT 1 13-SEP-05 1X15 0 JRNL AUTH T.JOHANSSON,C.OSWALD,A.PEDERSEN,S.TORNROTH,M.OKVIST, JRNL AUTH 2 B.G.KARLSSON,J.RYDSTROM,U.KRENGEL JRNL TITL X-RAY STRUCTURE OF DOMAIN I OF THE PROTON-PUMPING MEMBRANE JRNL TITL 2 PROTEIN TRANSHYDROGENASE FROM ESCHERICHIA COLI JRNL REF J.MOL.BIOL. V. 352 299 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 16083909 JRNL DOI 10.1016/J.JMB.2005.07.022 REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.600 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 40678 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2132 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.04 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2819 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3920 REMARK 3 BIN FREE R VALUE SET COUNT : 145 REMARK 3 BIN FREE R VALUE : 0.4200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5457 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 229 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.52000 REMARK 3 B22 (A**2) : -0.97000 REMARK 3 B33 (A**2) : -0.51000 REMARK 3 B12 (A**2) : -1.28000 REMARK 3 B13 (A**2) : 1.98000 REMARK 3 B23 (A**2) : -0.45000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.222 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.190 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.565 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5590 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5267 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7601 ; 1.651 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12245 ; 0.873 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 726 ; 6.742 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 906 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6218 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1029 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1045 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 6060 ; 0.237 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3471 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 250 ; 0.186 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.243 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 61 ; 0.290 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.219 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3622 ; 0.923 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5837 ; 1.701 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1968 ; 2.503 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1764 ; 4.322 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1X15 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-APR-05. REMARK 100 THE DEPOSITION ID IS D_1000024247. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40678 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.600 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM ACETATE, TRISODIUM CITRATE REMARK 280 DIHYDRATE, PEG 4000, PH 5.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 994 REMARK 465 HIS A 995 REMARK 465 HIS A 996 REMARK 465 HIS A 997 REMARK 465 HIS A 998 REMARK 465 HIS A 999 REMARK 465 HIS A 1000 REMARK 465 LYS A 1217 REMARK 465 GLU A 1218 REMARK 465 GLU A 1219 REMARK 465 ALA A 1220 REMARK 465 GLY A 1221 REMARK 465 SER A 1222 REMARK 465 ALA A 1377 REMARK 465 GLN A 1378 REMARK 465 PRO A 1379 REMARK 465 GLN A 1380 REMARK 465 ALA A 1381 REMARK 465 ALA A 1382 REMARK 465 GLN A 1383 REMARK 465 LYS A 1384 REMARK 465 ALA A 1385 REMARK 465 ALA A 1386 REMARK 465 PRO A 1387 REMARK 465 GLU A 1388 REMARK 465 VAL A 1389 REMARK 465 LYS A 1390 REMARK 465 THR A 1391 REMARK 465 GLU A 1392 REMARK 465 GLU A 1393 REMARK 465 LYS A 1394 REMARK 465 MET B 994 REMARK 465 HIS B 995 REMARK 465 HIS B 996 REMARK 465 HIS B 997 REMARK 465 HIS B 998 REMARK 465 HIS B 999 REMARK 465 PHE B 1216 REMARK 465 LYS B 1217 REMARK 465 GLU B 1218 REMARK 465 GLU B 1219 REMARK 465 ALA B 1220 REMARK 465 GLY B 1221 REMARK 465 SER B 1222 REMARK 465 GLY B 1223 REMARK 465 ASP B 1224 REMARK 465 GLY B 1225 REMARK 465 TYR B 1226 REMARK 465 ALA B 1227 REMARK 465 LYS B 1228 REMARK 465 VAL B 1229 REMARK 465 MET B 1230 REMARK 465 VAL B 1375 REMARK 465 SER B 1376 REMARK 465 ALA B 1377 REMARK 465 GLN B 1378 REMARK 465 PRO B 1379 REMARK 465 GLN B 1380 REMARK 465 ALA B 1381 REMARK 465 ALA B 1382 REMARK 465 GLN B 1383 REMARK 465 LYS B 1384 REMARK 465 ALA B 1385 REMARK 465 ALA B 1386 REMARK 465 PRO B 1387 REMARK 465 GLU B 1388 REMARK 465 VAL B 1389 REMARK 465 LYS B 1390 REMARK 465 THR B 1391 REMARK 465 GLU B 1392 REMARK 465 GLU B 1393 REMARK 465 LYS B 1394 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 1151 O HOH B 149 1.90 REMARK 500 O HOH B 180 O HOH B 291 1.95 REMARK 500 CZ ARG B 1151 O HOH B 149 2.10 REMARK 500 OE1 GLN B 1025 O HOH B 306 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET B1113 CG MET B1113 SD -0.183 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A1047 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP A1078 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A1195 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A1215 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A1250 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG A1318 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A1318 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ASP A1343 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A1351 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B1047 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B1343 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A1065 59.25 -94.63 REMARK 500 ILE A1093 -47.11 -137.01 REMARK 500 ASP A1215 -85.73 -55.93 REMARK 500 ILE B1093 -47.15 -134.08 REMARK 500 ASP B1232 -35.59 -157.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 1260 LYS B 1261 -148.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 1395 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1X13 RELATED DB: PDB REMARK 900 E. COLI TRANSHYDROGENASE DOMAIN I REMARK 900 RELATED ID: 1X14 RELATED DB: PDB REMARK 900 E. COLI TRANSHYDROGENASE DOMAIN I WITH BOUND NAD DBREF 1X15 A 1002 1394 UNP P07001 PNTA_ECOLI 2 394 DBREF 1X15 B 1002 1394 UNP P07001 PNTA_ECOLI 2 394 SEQADV 1X15 MET A 994 UNP P07001 EXPRESSION TAG SEQADV 1X15 HIS A 995 UNP P07001 EXPRESSION TAG SEQADV 1X15 HIS A 996 UNP P07001 EXPRESSION TAG SEQADV 1X15 HIS A 997 UNP P07001 EXPRESSION TAG SEQADV 1X15 HIS A 998 UNP P07001 EXPRESSION TAG SEQADV 1X15 HIS A 999 UNP P07001 EXPRESSION TAG SEQADV 1X15 HIS A 1000 UNP P07001 EXPRESSION TAG SEQADV 1X15 GLY A 1001 UNP P07001 EXPRESSION TAG SEQADV 1X15 MET B 994 UNP P07001 EXPRESSION TAG SEQADV 1X15 HIS B 995 UNP P07001 EXPRESSION TAG SEQADV 1X15 HIS B 996 UNP P07001 EXPRESSION TAG SEQADV 1X15 HIS B 997 UNP P07001 EXPRESSION TAG SEQADV 1X15 HIS B 998 UNP P07001 EXPRESSION TAG SEQADV 1X15 HIS B 999 UNP P07001 EXPRESSION TAG SEQADV 1X15 HIS B 1000 UNP P07001 EXPRESSION TAG SEQADV 1X15 GLY B 1001 UNP P07001 EXPRESSION TAG SEQRES 1 A 401 MET HIS HIS HIS HIS HIS HIS GLY ARG ILE GLY ILE PRO SEQRES 2 A 401 ARG GLU ARG LEU THR ASN GLU THR ARG VAL ALA ALA THR SEQRES 3 A 401 PRO LYS THR VAL GLU GLN LEU LEU LYS LEU GLY PHE THR SEQRES 4 A 401 VAL ALA VAL GLU SER GLY ALA GLY GLN LEU ALA SER PHE SEQRES 5 A 401 ASP ASP LYS ALA PHE VAL GLN ALA GLY ALA GLU ILE VAL SEQRES 6 A 401 GLU GLY ASN SER VAL TRP GLN SER GLU ILE ILE LEU LYS SEQRES 7 A 401 VAL ASN ALA PRO LEU ASP ASP GLU ILE ALA LEU LEU ASN SEQRES 8 A 401 PRO GLY THR THR LEU VAL SER PHE ILE TRP PRO ALA GLN SEQRES 9 A 401 ASN PRO GLU LEU MET GLN LYS LEU ALA GLU ARG ASN VAL SEQRES 10 A 401 THR VAL MET ALA MET ASP SER VAL PRO ARG ILE SER ARG SEQRES 11 A 401 ALA GLN SER LEU ASP ALA LEU SER SER MET ALA ASN ILE SEQRES 12 A 401 ALA GLY TYR ARG ALA ILE VAL GLU ALA ALA HIS GLU PHE SEQRES 13 A 401 GLY ARG PHE PHE THR GLY GLN ILE THR ALA ALA GLY LYS SEQRES 14 A 401 VAL PRO PRO ALA LYS VAL MET VAL ILE GLY ALA GLY VAL SEQRES 15 A 401 ALA GLY LEU ALA ALA ILE GLY ALA ALA ASN SER LEU GLY SEQRES 16 A 401 ALA ILE VAL ARG ALA PHE ASP THR ARG PRO GLU VAL LYS SEQRES 17 A 401 GLU GLN VAL GLN SER MET GLY ALA GLU PHE LEU GLU LEU SEQRES 18 A 401 ASP PHE LYS GLU GLU ALA GLY SER GLY ASP GLY TYR ALA SEQRES 19 A 401 LYS VAL MET SER ASP ALA PHE ILE LYS ALA GLU MET GLU SEQRES 20 A 401 LEU PHE ALA ALA GLN ALA LYS GLU VAL ASP ILE ILE VAL SEQRES 21 A 401 THR THR ALA LEU ILE PRO GLY LYS PRO ALA PRO LYS LEU SEQRES 22 A 401 ILE THR ARG GLU MET VAL ASP SER MET LYS ALA GLY SER SEQRES 23 A 401 VAL ILE VAL ASP LEU ALA ALA GLN ASN GLY GLY ASN CYS SEQRES 24 A 401 GLU TYR THR VAL PRO GLY GLU ILE PHE THR THR GLU ASN SEQRES 25 A 401 GLY VAL LYS VAL ILE GLY TYR THR ASP LEU PRO GLY ARG SEQRES 26 A 401 LEU PRO THR GLN SER SER GLN LEU TYR GLY THR ASN LEU SEQRES 27 A 401 VAL ASN LEU LEU LYS LEU LEU CYS LYS GLU LYS ASP GLY SEQRES 28 A 401 ASN ILE THR VAL ASP PHE ASP ASP VAL VAL ILE ARG GLY SEQRES 29 A 401 VAL THR VAL ILE ARG ALA GLY GLU ILE THR TRP PRO ALA SEQRES 30 A 401 PRO PRO ILE GLN VAL SER ALA GLN PRO GLN ALA ALA GLN SEQRES 31 A 401 LYS ALA ALA PRO GLU VAL LYS THR GLU GLU LYS SEQRES 1 B 401 MET HIS HIS HIS HIS HIS HIS GLY ARG ILE GLY ILE PRO SEQRES 2 B 401 ARG GLU ARG LEU THR ASN GLU THR ARG VAL ALA ALA THR SEQRES 3 B 401 PRO LYS THR VAL GLU GLN LEU LEU LYS LEU GLY PHE THR SEQRES 4 B 401 VAL ALA VAL GLU SER GLY ALA GLY GLN LEU ALA SER PHE SEQRES 5 B 401 ASP ASP LYS ALA PHE VAL GLN ALA GLY ALA GLU ILE VAL SEQRES 6 B 401 GLU GLY ASN SER VAL TRP GLN SER GLU ILE ILE LEU LYS SEQRES 7 B 401 VAL ASN ALA PRO LEU ASP ASP GLU ILE ALA LEU LEU ASN SEQRES 8 B 401 PRO GLY THR THR LEU VAL SER PHE ILE TRP PRO ALA GLN SEQRES 9 B 401 ASN PRO GLU LEU MET GLN LYS LEU ALA GLU ARG ASN VAL SEQRES 10 B 401 THR VAL MET ALA MET ASP SER VAL PRO ARG ILE SER ARG SEQRES 11 B 401 ALA GLN SER LEU ASP ALA LEU SER SER MET ALA ASN ILE SEQRES 12 B 401 ALA GLY TYR ARG ALA ILE VAL GLU ALA ALA HIS GLU PHE SEQRES 13 B 401 GLY ARG PHE PHE THR GLY GLN ILE THR ALA ALA GLY LYS SEQRES 14 B 401 VAL PRO PRO ALA LYS VAL MET VAL ILE GLY ALA GLY VAL SEQRES 15 B 401 ALA GLY LEU ALA ALA ILE GLY ALA ALA ASN SER LEU GLY SEQRES 16 B 401 ALA ILE VAL ARG ALA PHE ASP THR ARG PRO GLU VAL LYS SEQRES 17 B 401 GLU GLN VAL GLN SER MET GLY ALA GLU PHE LEU GLU LEU SEQRES 18 B 401 ASP PHE LYS GLU GLU ALA GLY SER GLY ASP GLY TYR ALA SEQRES 19 B 401 LYS VAL MET SER ASP ALA PHE ILE LYS ALA GLU MET GLU SEQRES 20 B 401 LEU PHE ALA ALA GLN ALA LYS GLU VAL ASP ILE ILE VAL SEQRES 21 B 401 THR THR ALA LEU ILE PRO GLY LYS PRO ALA PRO LYS LEU SEQRES 22 B 401 ILE THR ARG GLU MET VAL ASP SER MET LYS ALA GLY SER SEQRES 23 B 401 VAL ILE VAL ASP LEU ALA ALA GLN ASN GLY GLY ASN CYS SEQRES 24 B 401 GLU TYR THR VAL PRO GLY GLU ILE PHE THR THR GLU ASN SEQRES 25 B 401 GLY VAL LYS VAL ILE GLY TYR THR ASP LEU PRO GLY ARG SEQRES 26 B 401 LEU PRO THR GLN SER SER GLN LEU TYR GLY THR ASN LEU SEQRES 27 B 401 VAL ASN LEU LEU LYS LEU LEU CYS LYS GLU LYS ASP GLY SEQRES 28 B 401 ASN ILE THR VAL ASP PHE ASP ASP VAL VAL ILE ARG GLY SEQRES 29 B 401 VAL THR VAL ILE ARG ALA GLY GLU ILE THR TRP PRO ALA SEQRES 30 B 401 PRO PRO ILE GLN VAL SER ALA GLN PRO GLN ALA ALA GLN SEQRES 31 B 401 LYS ALA ALA PRO GLU VAL LYS THR GLU GLU LYS HET NAD B1395 44 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 3 NAD C21 H27 N7 O14 P2 FORMUL 4 HOH *229(H2 O) HELIX 1 1 THR A 1019 LEU A 1029 1 11 HELIX 2 2 GLY A 1040 SER A 1044 5 5 HELIX 3 3 ASP A 1046 GLY A 1054 1 9 HELIX 4 4 GLU A 1059 GLN A 1065 5 7 HELIX 5 5 LEU A 1076 ALA A 1081 1 6 HELIX 6 6 TRP A 1094 GLN A 1097 5 4 HELIX 7 7 ASN A 1098 GLU A 1107 1 10 HELIX 8 8 ASP A 1116 VAL A 1118 5 3 HELIX 9 9 ILE A 1121 LEU A 1127 5 7 HELIX 10 10 ASP A 1128 PHE A 1149 1 22 HELIX 11 11 GLY A 1174 LEU A 1187 1 14 HELIX 12 12 ARG A 1197 GLU A 1199 5 3 HELIX 13 13 VAL A 1200 MET A 1207 1 8 HELIX 14 14 ASP A 1224 SER A 1231 1 8 HELIX 15 15 SER A 1231 VAL A 1249 1 19 HELIX 16 16 THR A 1268 SER A 1274 1 7 HELIX 17 17 ALA A 1285 GLY A 1289 5 5 HELIX 18 18 LEU A 1315 ARG A 1318 5 4 HELIX 19 19 LEU A 1319 CYS A 1339 1 21 HELIX 20 20 ASP A 1352 VAL A 1358 1 7 HELIX 21 21 THR B 1019 LEU B 1029 1 11 HELIX 22 22 GLY B 1040 SER B 1044 5 5 HELIX 23 23 ASP B 1046 GLY B 1054 1 9 HELIX 24 24 GLY B 1060 GLN B 1065 5 6 HELIX 25 25 LEU B 1076 ALA B 1081 1 6 HELIX 26 26 TRP B 1094 GLN B 1097 5 4 HELIX 27 27 ASN B 1098 ARG B 1108 1 11 HELIX 28 28 ASP B 1116 VAL B 1118 5 3 HELIX 29 29 ILE B 1121 LEU B 1127 5 7 HELIX 30 30 ASP B 1128 PHE B 1149 1 22 HELIX 31 31 GLY B 1174 LEU B 1187 1 14 HELIX 32 32 ARG B 1197 GLU B 1199 5 3 HELIX 33 33 VAL B 1200 MET B 1207 1 8 HELIX 34 34 ASP B 1232 VAL B 1249 1 18 HELIX 35 35 THR B 1268 SER B 1274 1 7 HELIX 36 36 ALA B 1285 GLY B 1289 5 5 HELIX 37 37 LEU B 1315 ARG B 1318 5 4 HELIX 38 38 LEU B 1319 CYS B 1339 1 21 HELIX 39 39 ASP B 1352 VAL B 1358 1 7 SHEET 1 A 8 GLU A1056 VAL A1058 0 SHEET 2 A 8 THR A1032 GLU A1036 1 N VAL A1033 O GLU A1056 SHEET 3 A 8 ARG A1002 ILE A1005 1 N ILE A1003 O THR A1032 SHEET 4 A 8 ILE A1068 LEU A1070 1 O ILE A1068 N GLY A1004 SHEET 5 A 8 THR A1088 SER A1091 1 O VAL A1090 N ILE A1069 SHEET 6 A 8 THR A1111 ALA A1114 1 O MET A1113 N LEU A1089 SHEET 7 A 8 THR A1359 ARG A1362 -1 O ILE A1361 N VAL A1112 SHEET 8 A 8 GLU A1365 ILE A1366 -1 O GLU A1365 N ARG A1362 SHEET 1 B 2 GLN A1156 THR A1158 0 SHEET 2 B 2 GLY A1161 VAL A1163 -1 O VAL A1163 N GLN A1156 SHEET 1 C 7 GLU A1210 PHE A1211 0 SHEET 2 C 7 ILE A1190 PHE A1194 1 N ALA A1193 O GLU A1210 SHEET 3 C 7 LYS A1167 ILE A1171 1 N VAL A1168 O ILE A1190 SHEET 4 C 7 ILE A1251 THR A1254 1 O ILE A1251 N MET A1169 SHEET 5 C 7 VAL A1280 ASP A1283 1 O VAL A1282 N ILE A1252 SHEET 6 C 7 LYS A1308 ILE A1310 1 O ILE A1310 N ILE A1281 SHEET 7 C 7 ILE A1300 THR A1302 -1 N PHE A1301 O VAL A1309 SHEET 1 D 8 GLU B1056 VAL B1058 0 SHEET 2 D 8 THR B1032 GLU B1036 1 N VAL B1033 O GLU B1056 SHEET 3 D 8 ARG B1002 ILE B1005 1 N ILE B1003 O ALA B1034 SHEET 4 D 8 ILE B1068 LEU B1070 1 O ILE B1068 N GLY B1004 SHEET 5 D 8 THR B1088 SER B1091 1 O VAL B1090 N ILE B1069 SHEET 6 D 8 THR B1111 ALA B1114 1 O THR B1111 N LEU B1089 SHEET 7 D 8 THR B1359 ARG B1362 -1 O ILE B1361 N VAL B1112 SHEET 8 D 8 GLU B1365 ILE B1366 -1 O GLU B1365 N ARG B1362 SHEET 1 E 2 GLN B1156 THR B1158 0 SHEET 2 E 2 GLY B1161 VAL B1163 -1 O VAL B1163 N GLN B1156 SHEET 1 F 7 GLU B1210 PHE B1211 0 SHEET 2 F 7 ILE B1190 PHE B1194 1 N ALA B1193 O GLU B1210 SHEET 3 F 7 LYS B1167 ILE B1171 1 N VAL B1168 O ARG B1192 SHEET 4 F 7 ILE B1251 THR B1254 1 O VAL B1253 N ILE B1171 SHEET 5 F 7 VAL B1280 ASP B1283 1 O VAL B1282 N ILE B1252 SHEET 6 F 7 LYS B1308 ILE B1310 1 O ILE B1310 N ILE B1281 SHEET 7 F 7 ILE B1300 THR B1302 -1 N PHE B1301 O VAL B1309 CISPEP 1 TRP A 1368 PRO A 1369 0 -9.09 CISPEP 2 TRP B 1368 PRO B 1369 0 3.48 SITE 1 AC1 17 HOH B 35 HOH B 313 ARG B1120 ILE B1121 SITE 2 AC1 17 SER B1122 GLN B1125 GLY B1172 GLY B1174 SITE 3 AC1 17 VAL B1175 ASP B1195 THR B1196 ARG B1197 SITE 4 AC1 17 GLU B1238 THR B1255 ALA B1256 LEU B1257 SITE 5 AC1 17 LEU B1266 CRYST1 38.728 67.089 76.836 67.22 80.19 81.60 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025821 -0.003815 -0.003282 0.00000 SCALE2 0.000000 0.015067 -0.006031 0.00000 SCALE3 0.000000 0.000000 0.014227 0.00000