HEADER SIGNALING PROTEIN 04-APR-05 1X1F TITLE SOLUTION STRUCTURE OF THE PH DOMAIN OF HUMAN DOCKING PROTEIN BRDG1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIGNAL-TRANSDUCING ADAPTOR PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PH DOMAIN; COMPND 5 SYNONYM: STAP-1, STEM CELL ADAPTOR PROTEIN 1, BCR DOWNSTREAM COMPND 6 SIGNALING PROTEIN 1, DOCKING PROTEIN BRDG1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRDG1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040301-57; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS DOCKING PROTEIN BRDG1, PH DOMAIN, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING KEYWDS 4 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.LI,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1X1F 1 REMARK SEQADV REVDAT 2 24-FEB-09 1X1F 1 VERSN REVDAT 1 04-OCT-05 1X1F 0 JRNL AUTH H.LI,T.TOMIZAWA,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE PH DOMAIN OF HUMAN DOCKING PROTEIN JRNL TITL 2 BRDG1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 1.0.7 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1X1F COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-APR-05. REMARK 100 THE DEPOSITION ID IS D_1000024257. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.00MM PH DOMAIN U-13C, 15N; REMARK 210 20MM D-TRIS-HCL(PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.913, CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH REMARK 210 THE LEAST RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 129 H VAL A 133 1.51 REMARK 500 O LEU A 46 H LEU A 61 1.53 REMARK 500 O TRP A 104 H ILE A 108 1.55 REMARK 500 H THR A 67 O VAL A 85 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 14 -69.22 -122.43 REMARK 500 1 ALA A 15 -60.85 -146.63 REMARK 500 1 PHE A 23 108.25 -55.85 REMARK 500 1 SER A 29 112.37 -39.58 REMARK 500 1 ARG A 32 -46.18 84.74 REMARK 500 1 TYR A 34 130.10 -36.32 REMARK 500 1 THR A 44 19.16 -146.82 REMARK 500 1 LEU A 61 -161.91 -120.54 REMARK 500 1 CYS A 68 -179.81 167.94 REMARK 500 1 SER A 74 88.21 49.10 REMARK 500 1 GLU A 76 -59.34 -169.74 REMARK 500 1 THR A 95 -161.61 -122.41 REMARK 500 1 THR A 112 -48.84 -143.47 REMARK 500 1 SER A 115 -156.64 -141.90 REMARK 500 1 ASN A 119 57.23 -109.85 REMARK 500 1 LEU A 122 -176.99 -56.19 REMARK 500 1 ILE A 142 -79.62 -43.27 REMARK 500 1 SER A 144 -53.57 -124.53 REMARK 500 1 SER A 148 163.44 64.43 REMARK 500 2 SER A 2 169.17 179.77 REMARK 500 2 SER A 5 89.75 61.64 REMARK 500 2 SER A 6 111.17 -170.99 REMARK 500 2 GLN A 8 76.20 46.74 REMARK 500 2 LEU A 11 105.77 64.81 REMARK 500 2 PHE A 20 144.94 -176.79 REMARK 500 2 PHE A 23 99.60 -44.11 REMARK 500 2 ARG A 28 -80.89 -40.98 REMARK 500 2 SER A 29 -55.74 -161.28 REMARK 500 2 GLU A 33 148.25 -178.13 REMARK 500 2 TYR A 34 123.94 -37.49 REMARK 500 2 TRP A 38 87.89 -65.81 REMARK 500 2 THR A 44 20.21 -150.16 REMARK 500 2 CYS A 68 -179.32 164.44 REMARK 500 2 SER A 74 -59.16 179.93 REMARK 500 2 GLU A 76 173.25 -50.12 REMARK 500 2 ASN A 78 -49.54 178.20 REMARK 500 2 THR A 112 -45.18 -147.92 REMARK 500 2 GLN A 118 30.78 -90.85 REMARK 500 2 LEU A 122 -179.34 -50.95 REMARK 500 2 ILE A 142 -78.97 -43.27 REMARK 500 3 SER A 2 97.05 -175.30 REMARK 500 3 SER A 6 -57.84 -121.98 REMARK 500 3 ILE A 13 142.41 65.21 REMARK 500 3 PHE A 20 144.08 -176.09 REMARK 500 3 PHE A 23 98.91 -37.53 REMARK 500 3 SER A 29 90.90 -65.41 REMARK 500 3 CYS A 68 -178.65 -179.11 REMARK 500 3 SER A 74 -61.21 -140.70 REMARK 500 3 THR A 75 121.57 62.90 REMARK 500 3 GLU A 76 -58.47 72.44 REMARK 500 REMARK 500 THIS ENTRY HAS 444 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001002916.1 RELATED DB: TARGETDB DBREF 1X1F A 8 143 UNP Q9ULZ2 STAP1_HUMAN 16 151 SEQADV 1X1F GLY A 1 UNP Q9ULZ2 CLONING ARTIFACT SEQADV 1X1F SER A 2 UNP Q9ULZ2 CLONING ARTIFACT SEQADV 1X1F SER A 3 UNP Q9ULZ2 CLONING ARTIFACT SEQADV 1X1F GLY A 4 UNP Q9ULZ2 CLONING ARTIFACT SEQADV 1X1F SER A 5 UNP Q9ULZ2 CLONING ARTIFACT SEQADV 1X1F SER A 6 UNP Q9ULZ2 CLONING ARTIFACT SEQADV 1X1F GLY A 7 UNP Q9ULZ2 CLONING ARTIFACT SEQADV 1X1F SER A 144 UNP Q9ULZ2 CLONING ARTIFACT SEQADV 1X1F GLY A 145 UNP Q9ULZ2 CLONING ARTIFACT SEQADV 1X1F PRO A 146 UNP Q9ULZ2 CLONING ARTIFACT SEQADV 1X1F SER A 147 UNP Q9ULZ2 CLONING ARTIFACT SEQADV 1X1F SER A 148 UNP Q9ULZ2 CLONING ARTIFACT SEQADV 1X1F GLY A 149 UNP Q9ULZ2 CLONING ARTIFACT SEQRES 1 A 149 GLY SER SER GLY SER SER GLY GLN GLU ARG LEU LYS ILE SEQRES 2 A 149 THR ALA LEU PRO LEU TYR PHE GLU GLY PHE LEU LEU ILE SEQRES 3 A 149 LYS ARG SER GLY TYR ARG GLU TYR GLU HIS TYR TRP THR SEQRES 4 A 149 GLU LEU ARG GLY THR THR LEU PHE PHE TYR THR ASP LYS SEQRES 5 A 149 LYS SER ILE ILE TYR VAL ASP LYS LEU ASP ILE VAL ASP SEQRES 6 A 149 LEU THR CYS LEU THR GLU GLN ASN SER THR GLU LYS ASN SEQRES 7 A 149 CYS ALA LYS PHE THR LEU VAL LEU PRO LYS GLU GLU VAL SEQRES 8 A 149 GLN LEU LYS THR GLU ASN THR GLU SER GLY GLU GLU TRP SEQRES 9 A 149 ARG GLY PHE ILE LEU THR VAL THR GLU LEU SER VAL PRO SEQRES 10 A 149 GLN ASN VAL SER LEU LEU PRO GLY GLN VAL ILE LYS LEU SEQRES 11 A 149 HIS GLU VAL LEU GLU ARG GLU LYS LYS ARG ARG ILE GLU SEQRES 12 A 149 SER GLY PRO SER SER GLY HELIX 1 1 THR A 98 GLU A 113 1 16 HELIX 2 2 PRO A 124 ILE A 142 1 19 SHEET 1 A 7 ASP A 59 ASP A 62 0 SHEET 2 A 7 THR A 45 TYR A 49 -1 N PHE A 48 O ASP A 59 SHEET 3 A 7 GLU A 35 ARG A 42 -1 N ARG A 42 O THR A 45 SHEET 4 A 7 LEU A 18 LYS A 27 -1 N ILE A 26 O GLU A 35 SHEET 5 A 7 VAL A 91 LYS A 94 -1 O GLN A 92 N LYS A 27 SHEET 6 A 7 LYS A 81 VAL A 85 -1 N LEU A 84 O VAL A 91 SHEET 7 A 7 CYS A 68 GLU A 71 -1 N CYS A 68 O VAL A 85 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1