HEADER TRANSFERASE 08-APR-05 1X1N TITLE STRUCTURE DETERMINATION AND REFINEMENT AT 1.8 A RESOLUTION OF TITLE 2 DISPROPORTIONATING ENZYME FROM POTATO COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4-ALPHA-GLUCANOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DISPROPORTIONATING ENZYME, AMYLOMALTASE, D-ENZYME; COMPND 5 EC: 2.4.1.25; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SOLANUM TUBEROSUM; SOURCE 3 ORGANISM_COMMON: POTATO; SOURCE 4 ORGANISM_TAXID: 4113; SOURCE 5 TISSUE: TUBER; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21D KEYWDS DISPROPORTIONATING ENZYME, AMYLOMALTASE, D-ENZYME, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.IMAMURA,T.MATSUURA,T.TAKAHA,K.FUJII,A.NAKAGAWA,M.KUSUNOKI,Y.NITTA REVDAT 4 25-OCT-23 1X1N 1 REMARK LINK REVDAT 3 13-JUL-11 1X1N 1 VERSN REVDAT 2 24-FEB-09 1X1N 1 VERSN REVDAT 1 18-APR-06 1X1N 0 JRNL AUTH K.IMAMURA,T.MATSUURA,T.TAKAHA,K.FUJII,A.NAKAGAWA,M.KUSUNOKI, JRNL AUTH 2 Y.NITTA JRNL TITL STRUCTURE DETERMINATION AND REFINEMENT AT 1.8 A RESOLUTION JRNL TITL 2 OF DISPROPORTIONATING ENZYME FROM POTATO JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 87.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.6 REMARK 3 NUMBER OF REFLECTIONS : 58187 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3136 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2434 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 51.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.2460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4183 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 55 REMARK 3 SOLVENT ATOMS : 662 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.01000 REMARK 3 B22 (A**2) : -0.31000 REMARK 3 B33 (A**2) : -0.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.122 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.941 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4385 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5946 ; 1.150 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 522 ; 5.316 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 215 ;34.464 ;24.186 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 726 ;12.586 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;18.268 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 623 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3372 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2265 ; 0.188 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3034 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 601 ; 0.134 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.161 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 86 ; 0.173 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 37 ; 0.177 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2692 ; 0.793 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4234 ; 1.318 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1969 ; 1.736 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1712 ; 2.772 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1X1N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-APR-05. REMARK 100 THE DEPOSITION ID IS D_1000024265. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61336 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 87.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.8 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.03100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 55.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.14400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 11.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1WW0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, HEPES, CALCIUM CHLORIDE, PH REMARK 280 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.19100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 87.19100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.93450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.26750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.93450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.26750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 87.19100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.93450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.26750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 87.19100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.93450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.26750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 8930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 87.19100 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 194 O HOH A 2558 2.04 REMARK 500 OD2 ASP A 80 O HOH A 2652 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 46 32.00 -89.03 REMARK 500 ARG A 76 53.21 -101.87 REMARK 500 ASP A 80 109.34 -34.38 REMARK 500 SER A 85 53.45 -117.68 REMARK 500 ASN A 256 47.24 -143.11 REMARK 500 SER A 280 23.62 44.42 REMARK 500 GLU A 281 -45.31 67.07 REMARK 500 SER A 398 -108.93 -125.66 REMARK 500 THR A 419 -168.44 -108.40 REMARK 500 LEU A 444 32.43 -80.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 180 OD1 REMARK 620 2 HOH A2002 O 83.6 REMARK 620 3 HOH A2044 O 86.4 74.1 REMARK 620 4 HOH A2059 O 86.1 132.9 150.7 REMARK 620 5 HOH A2087 O 88.4 147.6 74.1 77.4 REMARK 620 6 HOH A2258 O 88.5 60.5 134.6 73.4 150.8 REMARK 620 7 HOH A2290 O 171.9 104.4 95.5 88.4 84.7 95.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1009 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1WW0 RELATED DB: PDB REMARK 900 THE SAME PROTEIN LABELED WITH SELENO-METHIONIN DBREF 1X1N A 1 524 UNP Q06801 DPEP_SOLTU 53 576 SEQRES 1 A 524 ALA VAL PRO ALA VAL GLY GLU ASP PHE PRO ILE ASP TYR SEQRES 2 A 524 ALA ASP TRP LEU PRO LYS ARG ASP PRO ASN ASP ARG ARG SEQRES 3 A 524 ARG ALA GLY ILE LEU LEU HIS PRO THR SER PHE PRO GLY SEQRES 4 A 524 PRO TYR GLY ILE GLY ASP LEU GLY PRO GLN ALA PHE LYS SEQRES 5 A 524 PHE LEU ASP TRP LEU HIS LEU ALA GLY CYS SER LEU TRP SEQRES 6 A 524 GLN VAL LEU PRO LEU VAL PRO PRO GLY LYS ARG GLY ASN SEQRES 7 A 524 GLU ASP GLY SER PRO TYR SER GLY GLN ASP ALA ASN CYS SEQRES 8 A 524 GLY ASN THR LEU LEU ILE SER LEU GLU GLU LEU VAL ASP SEQRES 9 A 524 ASP GLY LEU LEU LYS MET GLU GLU LEU PRO GLU PRO LEU SEQRES 10 A 524 PRO THR ASP ARG VAL ASN TYR SER THR ILE SER GLU ILE SEQRES 11 A 524 LYS ASP PRO LEU ILE THR LYS ALA ALA LYS ARG LEU LEU SEQRES 12 A 524 SER SER GLU GLY GLU LEU LYS ASP GLN LEU GLU ASN PHE SEQRES 13 A 524 ARG ARG ASP PRO ASN ILE SER SER TRP LEU GLU ASP ALA SEQRES 14 A 524 ALA TYR PHE ALA ALA ILE ASP ASN SER VAL ASN THR ILE SEQRES 15 A 524 SER TRP TYR ASP TRP PRO GLU PRO LEU LYS ASN ARG HIS SEQRES 16 A 524 LEU ALA ALA LEU GLU GLU VAL TYR GLN SER GLU LYS ASP SEQRES 17 A 524 PHE ILE ASP ILE PHE ILE ALA GLN GLN PHE LEU PHE GLN SEQRES 18 A 524 ARG GLN TRP LYS LYS VAL ARG ASP TYR ALA ARG SER LYS SEQRES 19 A 524 GLY ILE SER ILE MET GLY ASP MET PRO ILE TYR VAL GLY SEQRES 20 A 524 TYR HIS SER ALA ASP VAL TRP ALA ASN LYS LYS GLN PHE SEQRES 21 A 524 LEU LEU ASN ARG LYS GLY PHE PRO LEU ILE VAL SER GLY SEQRES 22 A 524 VAL PRO PRO ASP ALA PHE SER GLU THR GLY GLN LEU TRP SEQRES 23 A 524 GLY SER PRO LEU TYR ASP TRP LYS ALA MET GLU LYS ASP SEQRES 24 A 524 GLY PHE SER TRP TRP VAL ARG ARG ILE GLN ARG ALA THR SEQRES 25 A 524 ASP LEU PHE ASP GLU PHE ARG ILE ASP HIS PHE ARG GLY SEQRES 26 A 524 PHE ALA GLY PHE TRP ALA VAL PRO SER GLU GLU LYS ILE SEQRES 27 A 524 ALA ILE LEU GLY ARG TRP LYS VAL GLY PRO GLY LYS PRO SEQRES 28 A 524 LEU PHE ASP ALA ILE LEU GLN ALA VAL GLY LYS ILE ASN SEQRES 29 A 524 ILE ILE ALA GLU ASP LEU GLY VAL ILE THR GLU ASP VAL SEQRES 30 A 524 VAL GLN LEU ARG LYS SER ILE GLU ALA PRO GLY MET ALA SEQRES 31 A 524 VAL LEU GLN PHE ALA PHE GLY SER ASP ALA GLU ASN PRO SEQRES 32 A 524 HIS LEU PRO HIS ASN HIS GLU GLN ASN GLN VAL VAL TYR SEQRES 33 A 524 THR GLY THR HIS ASP ASN ASP THR ILE ARG GLY TRP TRP SEQRES 34 A 524 ASP THR LEU PRO GLN GLU GLU LYS SER ASN VAL LEU LYS SEQRES 35 A 524 TYR LEU SER ASN ILE GLU GLU GLU GLU ILE SER ARG GLY SEQRES 36 A 524 LEU ILE GLU GLY ALA VAL SER SER VAL ALA ARG ILE ALA SEQRES 37 A 524 ILE ILE PRO MET GLN ASP VAL LEU GLY LEU GLY SER ASP SEQRES 38 A 524 SER ARG MET ASN ILE PRO ALA THR GLN PHE GLY ASN TRP SEQRES 39 A 524 SER TRP ARG ILE PRO SER SER THR SER PHE ASP ASN LEU SEQRES 40 A 524 ASP ALA GLU ALA LYS LYS LEU ARG ASP ILE LEU ALA THR SEQRES 41 A 524 TYR GLY ARG LEU HET CA A2001 1 HET GOL A1001 6 HET GOL A1002 6 HET GOL A1003 6 HET GOL A1004 6 HET GOL A1005 6 HET GOL A1006 6 HET GOL A1007 6 HET GOL A1008 6 HET GOL A1009 6 HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CA CA 2+ FORMUL 3 GOL 9(C3 H8 O3) FORMUL 12 HOH *662(H2 O) HELIX 1 1 ASP A 12 TRP A 16 5 5 HELIX 2 2 ASP A 21 ARG A 25 5 5 HELIX 3 3 HIS A 33 PHE A 37 5 5 HELIX 4 4 GLY A 47 GLY A 61 1 15 HELIX 5 5 ASN A 93 ILE A 97 5 5 HELIX 6 6 SER A 98 ASP A 105 1 8 HELIX 7 7 LYS A 109 LEU A 113 5 5 HELIX 8 8 THR A 126 SER A 145 1 20 HELIX 9 9 GLY A 147 ASP A 159 1 13 HELIX 10 10 ASP A 159 ASN A 180 1 22 HELIX 11 11 SER A 183 TRP A 187 5 5 HELIX 12 12 PRO A 188 ASN A 193 1 6 HELIX 13 13 HIS A 195 GLU A 206 1 12 HELIX 14 14 GLU A 206 LYS A 234 1 29 HELIX 15 15 SER A 250 ALA A 255 1 6 HELIX 16 16 ASN A 256 PHE A 260 5 5 HELIX 17 17 ASP A 292 ASP A 299 1 8 HELIX 18 18 PHE A 301 PHE A 315 1 15 HELIX 19 19 HIS A 322 PHE A 326 5 5 HELIX 20 20 GLY A 349 GLY A 361 1 13 HELIX 21 21 THR A 374 ILE A 384 1 11 HELIX 22 22 GLN A 393 ALA A 395 5 3 HELIX 23 23 LEU A 405 HIS A 409 5 5 HELIX 24 24 THR A 424 THR A 431 1 8 HELIX 25 25 PRO A 433 LEU A 444 1 12 HELIX 26 26 GLU A 448 GLU A 450 5 3 HELIX 27 27 GLU A 451 SER A 462 1 12 HELIX 28 28 MET A 472 LEU A 476 1 5 HELIX 29 29 GLY A 479 ARG A 483 5 5 HELIX 30 30 SER A 503 ASN A 506 5 4 HELIX 31 31 LEU A 507 TYR A 521 1 15 SHEET 1 A 8 ASN A 364 ALA A 367 0 SHEET 2 A 8 GLU A 317 ASP A 321 1 N PHE A 318 O ILE A 366 SHEET 3 A 8 SER A 237 PRO A 243 1 N MET A 242 O ASP A 321 SHEET 4 A 8 LEU A 64 GLN A 66 1 N TRP A 65 O MET A 239 SHEET 5 A 8 ARG A 27 LEU A 31 1 N ILE A 30 O GLN A 66 SHEET 6 A 8 ILE A 467 PRO A 471 1 O ALA A 468 N GLY A 29 SHEET 7 A 8 GLN A 413 TYR A 416 1 N VAL A 415 O ILE A 469 SHEET 8 A 8 GLY A 388 VAL A 391 1 N ALA A 390 O TYR A 416 SHEET 1 B 3 ILE A 270 GLY A 273 0 SHEET 2 B 3 GLY A 328 PRO A 333 -1 O VAL A 332 N VAL A 271 SHEET 3 B 3 ARG A 343 VAL A 346 -1 O LYS A 345 N PHE A 329 LINK OD1 ASN A 180 CA CA A2001 1555 1555 2.30 LINK CA CA A2001 O HOH A2002 1555 1555 2.47 LINK CA CA A2001 O HOH A2044 1555 1555 2.45 LINK CA CA A2001 O HOH A2059 1555 1555 2.42 LINK CA CA A2001 O HOH A2087 1555 1555 2.56 LINK CA CA A2001 O HOH A2258 1555 1555 2.61 LINK CA CA A2001 O HOH A2290 1555 1555 2.23 SITE 1 AC1 7 ASN A 180 HOH A2002 HOH A2044 HOH A2059 SITE 2 AC1 7 HOH A2087 HOH A2258 HOH A2290 SITE 1 AC2 6 HIS A 420 ASP A 421 ASN A 485 HOH A2381 SITE 2 AC2 6 HOH A2470 HOH A2500 SITE 1 AC3 6 PRO A 243 ILE A 244 TYR A 245 TRP A 286 SITE 2 AC3 6 ASP A 321 HOH A2541 SITE 1 AC4 3 GLY A 371 PHE A 394 HIS A 404 SITE 1 AC5 8 GLY A 77 ASP A 80 ASP A 104 ASP A 105 SITE 2 AC5 8 LEU A 149 HOH A2333 HOH A2394 HOH A2652 SITE 1 AC6 10 TYR A 41 GLU A 100 MET A 110 THR A 181 SITE 2 AC6 10 ILE A 182 SER A 183 ASP A 186 HOH A2422 SITE 3 AC6 10 HOH A2556 HOH A2651 SITE 1 AC7 5 ASP A 168 TYR A 171 ARG A 194 LEU A 196 SITE 2 AC7 5 HOH A2551 SITE 1 AC8 9 ARG A 426 SER A 453 ARG A 454 ASP A 474 SITE 2 AC8 9 GLY A 477 LYS A 513 HOH A2092 HOH A2222 SITE 3 AC8 9 HOH A2240 SITE 1 AC9 3 ASP A 505 ASP A 508 HOH A2489 SITE 1 BC1 6 SER A 163 SER A 164 ASP A 168 HOH A2251 SITE 2 BC1 6 HOH A2429 HOH A2663 CRYST1 69.869 120.535 174.382 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014312 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008296 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005735 0.00000