HEADER PROTEIN BINDING 26-APR-05 1X2T TITLE CRYSTAL STRUCTURE OF HABU IX-BP AT PH 6.5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAGULATION FACTOR IX/X-BINDING PROTEIN A CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: COAGULATION FACTOR IX/FACTOR X-BINDING PROTEIN B CHAIN; COMPND 6 CHAIN: B, D; COMPND 7 SYNONYM: IX/X-BP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRIMERESURUS FLAVOVIRIDIS; SOURCE 3 ORGANISM_TAXID: 88087; SOURCE 4 SECRETION: VENOM; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: TRIMERESURUS FLAVOVIRIDIS; SOURCE 7 ORGANISM_TAXID: 88087; SOURCE 8 SECRETION: VENOM KEYWDS HETERODIMER, DOMAIN SWAPPING, C-TYPE LECTIN-LIKE PROTEIN, PROTEIN KEYWDS 2 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR N.SUZUKI,Z.FUJIMOTO,T.MORITA,A.FUKAMIZU,H.MIZUNO REVDAT 4 25-OCT-23 1X2T 1 REMARK LINK REVDAT 3 11-OCT-17 1X2T 1 REMARK REVDAT 2 24-FEB-09 1X2T 1 VERSN REVDAT 1 04-OCT-05 1X2T 0 JRNL AUTH N.SUZUKI,Z.FUJIMOTO,T.MORITA,A.FUKAMIZU,H.MIZUNO JRNL TITL PH-DEPENDENT STRUCTURAL CHANGES AT CA(2+)-BINDING SITES OF JRNL TITL 2 COAGULATION FACTOR IX-BINDING PROTEIN JRNL REF J.MOL.BIOL. V. 353 80 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 16165155 JRNL DOI 10.1016/J.JMB.2005.08.018 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1224138.880 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 47807 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2383 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.72 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7269 REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 393 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4094 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 568 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : 3.74000 REMARK 3 B33 (A**2) : -3.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.26000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM SIGMAA (A) : 0.15 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.17 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.690 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.200 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.820 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.990 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.900 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 37.09 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : PG4.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : PG4.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1X2T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-APR-05. REMARK 100 THE DEPOSITION ID IS D_1000024307. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-AUG-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : COLLIMATION REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : R-AXIS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47809 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 54.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.17300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1BJ3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 1000, PEG 8000, CALCIUM CHLORIDE, REMARK 280 MES, PH 6.5, MICROBATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.75450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 95 N - CA - C ANGL. DEV. = -17.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 18 58.79 -92.67 REMARK 500 GLU A 82 129.25 178.65 REMARK 500 ASN A 93 52.16 -149.84 REMARK 500 HIS B 34 149.55 -177.61 REMARK 500 SER B 62 -176.46 -171.52 REMARK 500 ASN B 70 52.44 39.22 REMARK 500 ARG B 86 -72.43 -133.22 REMARK 500 ALA B 89 42.25 -143.09 REMARK 500 SER B 101 15.13 -61.00 REMARK 500 TYR C 9 113.17 -161.16 REMARK 500 SER C 90 -72.53 -127.14 REMARK 500 ASN C 93 54.48 -148.27 REMARK 500 ASP D 5 -6.42 79.24 REMARK 500 GLU D 10 59.76 39.97 REMARK 500 SER D 62 -176.75 -170.70 REMARK 500 ARG D 86 -65.32 -136.81 REMARK 500 ALA D 89 41.09 -141.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PE B 602 REMARK 610 1PE D 601 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 41 O REMARK 620 2 SER A 41 OG 74.4 REMARK 620 3 GLU A 43 OE2 98.6 76.0 REMARK 620 4 GLU A 47 OE2 71.8 145.3 116.5 REMARK 620 5 GLU A 128 OE1 77.9 77.0 152.7 88.4 REMARK 620 6 GLU A 128 OE2 126.8 104.5 133.5 89.7 51.5 REMARK 620 7 HOH A 627 O 128.6 134.9 63.5 75.0 139.0 90.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 604 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 41 O REMARK 620 2 SER B 41 OG 71.8 REMARK 620 3 GLN B 43 OE1 80.5 77.2 REMARK 620 4 GLU B 47 OE2 77.1 146.1 110.9 REMARK 620 5 GLU B 120 OE1 83.0 72.0 148.3 91.3 REMARK 620 6 GLU B 120 OE2 120.0 113.0 158.8 71.8 48.9 REMARK 620 7 HOH B 626 O 134.7 137.5 76.8 75.3 132.5 83.9 REMARK 620 8 HOH B 633 O 138.3 66.9 84.4 144.5 90.3 82.9 77.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 605 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER C 41 O REMARK 620 2 SER C 41 OG 75.2 REMARK 620 3 GLU C 43 OE2 100.4 74.1 REMARK 620 4 GLU C 47 OE2 72.3 147.0 117.5 REMARK 620 5 GLU C 128 OE1 82.5 75.1 147.1 94.7 REMARK 620 6 GLU C 128 OE2 133.5 97.7 122.1 100.2 51.8 REMARK 620 7 HOH C 656 O 139.3 131.7 67.8 79.1 129.0 79.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 606 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER D 41 O REMARK 620 2 SER D 41 OG 72.3 REMARK 620 3 GLN D 43 OE1 84.0 78.8 REMARK 620 4 GLU D 47 OE2 74.9 144.9 109.8 REMARK 620 5 GLU D 120 OE1 81.2 74.2 152.1 89.0 REMARK 620 6 GLU D 120 OE2 121.5 111.8 154.0 75.8 48.9 REMARK 620 7 HOH D 628 O 135.1 141.1 78.3 73.0 128.3 79.4 REMARK 620 8 HOH D 637 O 140.6 69.1 81.3 144.6 95.4 80.9 76.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE D 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE B 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1X2W RELATED DB: PDB REMARK 900 APO-HABU IX-BP AT PH 4.6 DBREF 1X2T A 1 129 UNP Q7LZ71 Q7LZ71_TRIFL 1 129 DBREF 1X2T C 1 129 UNP Q7LZ71 Q7LZ71_TRIFL 1 129 DBREF 1X2T B 1 123 UNP P23807 IXB_TRIFL 24 146 DBREF 1X2T D 1 123 UNP P23807 IXB_TRIFL 24 146 SEQRES 1 A 129 ASP CYS PRO SER GLY TRP SER SER TYR GLU GLY HIS CYS SEQRES 2 A 129 TYR LYS PRO PHE LYS LEU TYR LYS THR TRP ASP ASP ALA SEQRES 3 A 129 GLU ARG PHE CYS THR GLU GLN ALA LYS GLY GLY HIS LEU SEQRES 4 A 129 VAL SER ILE GLU SER ALA GLY GLU ALA ASP PHE VAL ALA SEQRES 5 A 129 GLN LEU VAL THR GLU ASN ILE GLN ASN THR LYS SER TYR SEQRES 6 A 129 VAL TRP ILE GLY LEU ARG VAL GLN GLY LYS GLU LYS GLN SEQRES 7 A 129 CYS SER SER GLU TRP SER ASP GLY SER SER VAL SER TYR SEQRES 8 A 129 GLU ASN TRP ILE GLU ALA GLU SER LYS THR CYS LEU GLY SEQRES 9 A 129 LEU GLU LYS GLU THR GLY PHE ARG LYS TRP VAL ASN ILE SEQRES 10 A 129 TYR CYS GLY GLN GLN ASN PRO PHE VAL CYS GLU ALA SEQRES 1 B 123 ASP CYS PRO SER ASP TRP SER SER TYR GLU GLY HIS CYS SEQRES 2 B 123 TYR LYS PRO PHE SER GLU PRO LYS ASN TRP ALA ASP ALA SEQRES 3 B 123 GLU ASN PHE CYS THR GLN GLN HIS ALA GLY GLY HIS LEU SEQRES 4 B 123 VAL SER PHE GLN SER SER GLU GLU ALA ASP PHE VAL VAL SEQRES 5 B 123 LYS LEU ALA PHE GLN THR PHE GLY HIS SER ILE PHE TRP SEQRES 6 B 123 MET GLY LEU SER ASN VAL TRP ASN GLN CYS ASN TRP GLN SEQRES 7 B 123 TRP SER ASN ALA ALA MET LEU ARG TYR LYS ALA TRP ALA SEQRES 8 B 123 GLU GLU SER TYR CYS VAL TYR PHE LYS SER THR ASN ASN SEQRES 9 B 123 LYS TRP ARG SER ARG ALA CYS ARG MET MET ALA GLN PHE SEQRES 10 B 123 VAL CYS GLU PHE GLN ALA SEQRES 1 C 129 ASP CYS PRO SER GLY TRP SER SER TYR GLU GLY HIS CYS SEQRES 2 C 129 TYR LYS PRO PHE LYS LEU TYR LYS THR TRP ASP ASP ALA SEQRES 3 C 129 GLU ARG PHE CYS THR GLU GLN ALA LYS GLY GLY HIS LEU SEQRES 4 C 129 VAL SER ILE GLU SER ALA GLY GLU ALA ASP PHE VAL ALA SEQRES 5 C 129 GLN LEU VAL THR GLU ASN ILE GLN ASN THR LYS SER TYR SEQRES 6 C 129 VAL TRP ILE GLY LEU ARG VAL GLN GLY LYS GLU LYS GLN SEQRES 7 C 129 CYS SER SER GLU TRP SER ASP GLY SER SER VAL SER TYR SEQRES 8 C 129 GLU ASN TRP ILE GLU ALA GLU SER LYS THR CYS LEU GLY SEQRES 9 C 129 LEU GLU LYS GLU THR GLY PHE ARG LYS TRP VAL ASN ILE SEQRES 10 C 129 TYR CYS GLY GLN GLN ASN PRO PHE VAL CYS GLU ALA SEQRES 1 D 123 ASP CYS PRO SER ASP TRP SER SER TYR GLU GLY HIS CYS SEQRES 2 D 123 TYR LYS PRO PHE SER GLU PRO LYS ASN TRP ALA ASP ALA SEQRES 3 D 123 GLU ASN PHE CYS THR GLN GLN HIS ALA GLY GLY HIS LEU SEQRES 4 D 123 VAL SER PHE GLN SER SER GLU GLU ALA ASP PHE VAL VAL SEQRES 5 D 123 LYS LEU ALA PHE GLN THR PHE GLY HIS SER ILE PHE TRP SEQRES 6 D 123 MET GLY LEU SER ASN VAL TRP ASN GLN CYS ASN TRP GLN SEQRES 7 D 123 TRP SER ASN ALA ALA MET LEU ARG TYR LYS ALA TRP ALA SEQRES 8 D 123 GLU GLU SER TYR CYS VAL TYR PHE LYS SER THR ASN ASN SEQRES 9 D 123 LYS TRP ARG SER ARG ALA CYS ARG MET MET ALA GLN PHE SEQRES 10 D 123 VAL CYS GLU PHE GLN ALA HET CA A 603 1 HET CA B 604 1 HET 1PE B 602 13 HET CA C 605 1 HET CA D 606 1 HET 1PE D 601 13 HETNAM CA CALCIUM ION HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 5 CA 4(CA 2+) FORMUL 7 1PE 2(C10 H22 O6) FORMUL 11 HOH *568(H2 O) HELIX 1 1 THR A 22 GLU A 32 1 11 HELIX 2 2 SER A 44 ILE A 59 1 16 HELIX 3 3 ILE A 95 SER A 99 5 5 HELIX 4 4 GLU A 106 GLY A 110 5 5 HELIX 5 5 ASN B 22 GLN B 32 1 11 HELIX 6 6 SER B 44 GLY B 60 1 17 HELIX 7 7 THR C 22 GLU C 32 1 11 HELIX 8 8 SER C 44 ILE C 59 1 16 HELIX 9 9 ILE C 95 SER C 99 5 5 HELIX 10 10 GLU C 106 GLY C 110 5 5 HELIX 11 11 ASN D 22 HIS D 34 1 13 HELIX 12 12 SER D 44 GLY D 60 1 17 SHEET 1 A 4 SER A 7 TYR A 9 0 SHEET 2 A 4 HIS A 12 LYS A 21 -1 O TYR A 14 N SER A 7 SHEET 3 A 4 ASN A 123 ALA A 129 -1 O ALA A 129 N CYS A 13 SHEET 4 A 4 HIS A 38 LEU A 39 -1 N HIS A 38 O GLU A 128 SHEET 1 B 4 VAL A 115 ILE A 117 0 SHEET 2 B 4 CYS A 102 LEU A 105 -1 N GLY A 104 O VAL A 115 SHEET 3 B 4 VAL A 66 VAL A 72 -1 N VAL A 66 O LEU A 105 SHEET 4 B 4 TRP B 77 TRP B 79 -1 O GLN B 78 N ARG A 71 SHEET 1 C 4 SER B 7 TYR B 9 0 SHEET 2 C 4 HIS B 12 LYS B 21 -1 O TYR B 14 N SER B 7 SHEET 3 C 4 ALA B 115 GLN B 122 -1 O PHE B 117 N PHE B 17 SHEET 4 C 4 HIS B 38 LEU B 39 -1 N HIS B 38 O GLU B 120 SHEET 1 D 6 SER B 7 TYR B 9 0 SHEET 2 D 6 HIS B 12 LYS B 21 -1 O TYR B 14 N SER B 7 SHEET 3 D 6 ALA B 115 GLN B 122 -1 O PHE B 117 N PHE B 17 SHEET 4 D 6 ILE B 63 TRP B 65 1 N TRP B 65 O GLN B 116 SHEET 5 D 6 TYR B 95 LYS B 100 -1 O PHE B 99 N PHE B 64 SHEET 6 D 6 ARG B 107 ALA B 110 -1 O ARG B 109 N CYS B 96 SHEET 1 E 4 SER C 7 TYR C 9 0 SHEET 2 E 4 HIS C 12 LYS C 21 -1 O TYR C 14 N SER C 7 SHEET 3 E 4 ASN C 123 ALA C 129 -1 O PHE C 125 N PHE C 17 SHEET 4 E 4 HIS C 38 LEU C 39 -1 N HIS C 38 O GLU C 128 SHEET 1 F 4 VAL C 115 ILE C 117 0 SHEET 2 F 4 CYS C 102 LEU C 105 -1 N GLY C 104 O VAL C 115 SHEET 3 F 4 VAL C 66 VAL C 72 -1 N VAL C 66 O LEU C 105 SHEET 4 F 4 TRP D 77 TRP D 79 -1 O GLN D 78 N ARG C 71 SHEET 1 G 4 SER D 7 TYR D 9 0 SHEET 2 G 4 HIS D 12 LYS D 21 -1 O TYR D 14 N SER D 7 SHEET 3 G 4 ALA D 115 GLN D 122 -1 O PHE D 117 N PHE D 17 SHEET 4 G 4 HIS D 38 LEU D 39 -1 N HIS D 38 O GLU D 120 SHEET 1 H 6 SER D 7 TYR D 9 0 SHEET 2 H 6 HIS D 12 LYS D 21 -1 O TYR D 14 N SER D 7 SHEET 3 H 6 ALA D 115 GLN D 122 -1 O PHE D 117 N PHE D 17 SHEET 4 H 6 ILE D 63 TRP D 65 1 N TRP D 65 O GLN D 116 SHEET 5 H 6 TYR D 95 LYS D 100 -1 O PHE D 99 N PHE D 64 SHEET 6 H 6 ARG D 107 ALA D 110 -1 O ARG D 109 N CYS D 96 SSBOND 1 CYS A 2 CYS A 13 1555 1555 2.03 SSBOND 2 CYS A 30 CYS A 127 1555 1555 2.03 SSBOND 3 CYS A 79 CYS B 75 1555 1555 2.03 SSBOND 4 CYS A 102 CYS A 119 1555 1555 2.03 SSBOND 5 CYS B 2 CYS B 13 1555 1555 2.02 SSBOND 6 CYS B 30 CYS B 119 1555 1555 2.03 SSBOND 7 CYS B 96 CYS B 111 1555 1555 2.04 SSBOND 8 CYS C 2 CYS C 13 1555 1555 2.03 SSBOND 9 CYS C 30 CYS C 127 1555 1555 2.03 SSBOND 10 CYS C 79 CYS D 75 1555 1555 2.03 SSBOND 11 CYS C 102 CYS C 119 1555 1555 2.03 SSBOND 12 CYS D 2 CYS D 13 1555 1555 2.03 SSBOND 13 CYS D 30 CYS D 119 1555 1555 2.03 SSBOND 14 CYS D 96 CYS D 111 1555 1555 2.04 LINK O SER A 41 CA CA A 603 1555 1555 2.54 LINK OG SER A 41 CA CA A 603 1555 1555 2.34 LINK OE2BGLU A 43 CA CA A 603 1555 1555 2.52 LINK OE2 GLU A 47 CA CA A 603 1555 1555 2.46 LINK OE1 GLU A 128 CA CA A 603 1555 1555 2.65 LINK OE2 GLU A 128 CA CA A 603 1555 1555 2.35 LINK CA CA A 603 O HOH A 627 1555 1555 2.65 LINK O SER B 41 CA CA B 604 1555 1555 2.33 LINK OG SER B 41 CA CA B 604 1555 1555 2.55 LINK OE1 GLN B 43 CA CA B 604 1555 1555 2.40 LINK OE2 GLU B 47 CA CA B 604 1555 1555 2.42 LINK OE1 GLU B 120 CA CA B 604 1555 1555 2.71 LINK OE2 GLU B 120 CA CA B 604 1555 1555 2.58 LINK CA CA B 604 O HOH B 626 1555 1555 2.37 LINK CA CA B 604 O HOH B 633 1555 1555 2.71 LINK O SER C 41 CA CA C 605 1555 1555 2.39 LINK OG SER C 41 CA CA C 605 1555 1555 2.37 LINK OE2BGLU C 43 CA CA C 605 1555 1555 2.60 LINK OE2 GLU C 47 CA CA C 605 1555 1555 2.37 LINK OE1 GLU C 128 CA CA C 605 1555 1555 2.56 LINK OE2 GLU C 128 CA CA C 605 1555 1555 2.45 LINK CA CA C 605 O HOH C 656 1555 1555 2.47 LINK O SER D 41 CA CA D 606 1555 1555 2.47 LINK OG SER D 41 CA CA D 606 1555 1555 2.57 LINK OE1 GLN D 43 CA CA D 606 1555 1555 2.34 LINK OE2 GLU D 47 CA CA D 606 1555 1555 2.45 LINK OE1 GLU D 120 CA CA D 606 1555 1555 2.78 LINK OE2 GLU D 120 CA CA D 606 1555 1555 2.45 LINK CA CA D 606 O HOH D 628 1555 1555 2.42 LINK CA CA D 606 O HOH D 637 1555 1555 2.46 SITE 1 AC1 5 SER A 41 GLU A 43 GLU A 47 GLU A 128 SITE 2 AC1 5 HOH A 627 SITE 1 AC2 6 SER B 41 GLN B 43 GLU B 47 GLU B 120 SITE 2 AC2 6 HOH B 626 HOH B 633 SITE 1 AC3 5 SER C 41 GLU C 43 GLU C 47 GLU C 128 SITE 2 AC3 5 HOH C 656 SITE 1 AC4 6 SER D 41 GLN D 43 GLU D 47 GLU D 120 SITE 2 AC4 6 HOH D 628 HOH D 637 SITE 1 AC5 7 ASN D 73 TRP D 77 LYS D 88 TRP D 90 SITE 2 AC5 7 HOH D 609 HOH D 638 HOH D 658 SITE 1 AC6 4 ASN B 73 LYS B 88 TRP B 90 GLU B 93 CRYST1 60.710 63.509 66.902 90.00 117.00 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016472 0.000000 0.008393 0.00000 SCALE2 0.000000 0.015746 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016776 0.00000