HEADER DNA 26-APR-05 1X2Z TITLE NMR SOLUTION STRUCTURES OF A DNA DODECAMER CONTAINING A TANDEM GT TITLE 2 MISMATCHES USING NOE AND RESIDUAL DIPOLAR COUPLINGS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*AP*CP*TP*GP*TP*GP*CP*AP*GP*TP*C)-3'; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS RDC, DEOXYRIBONUCLEIC ACID, LIQUID CRYSTAL, TANDEM GT MISMATCHES, DNA EXPDTA SOLUTION NMR AUTHOR F.ALVAREZ-SALGADO,H.DESVAUX,Y.BOULARD REVDAT 4 02-MAR-22 1X2Z 1 REMARK REVDAT 3 24-FEB-09 1X2Z 1 VERSN REVDAT 2 05-DEC-06 1X2Z 1 JRNL REVDAT 1 01-AUG-06 1X2Z 0 JRNL AUTH F.ALVAREZ-SALGADO,H.DESVAUX,Y.BOULARD JRNL TITL NMR ASSESSMENT OF THE GLOBAL SHAPE OF A NON-LABELLED DNA JRNL TITL 2 DODECAMER CONTAINING A TANDEM OF G--T MISMATCHES JRNL REF MAGN.RESON.CHEM. V. 44 1081 2006 JRNL REFN ISSN 0749-1581 JRNL PMID 16972306 JRNL DOI 10.1002/MRC.1902 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1X2Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-APR-05. REMARK 100 THE DEPOSITION ID IS D_1000024313. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 10MM PHOSPHATE BUFFER, 50MM REMARK 210 NACL, 0.2MM EDTA REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5MM DNA, 10MM PHOSPHATE REMARK 210 BUFFER, 50MM NACL, 0.5MM EDTA REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; COSY; TOCSY; HSQC 1H-13C REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.5, CURVES 5.3, MOLMOL REMARK 210 2.6 REMARK 210 METHOD USED : SIMULATED ANNEALING, ENERGY REMARK 210 MINIMIZATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: RDCS WERE MEASURED IN PEG SOLUTION REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1X2O RELATED DB: PDB REMARK 900 RDCS WERE MEASURED IN BICELLES SDS SOLUTION REMARK 900 RELATED ID: 1X2S RELATED DB: PDB REMARK 900 RDCS WERE MEASURED IN PF1 SOLUTION REMARK 900 RELATED ID: 1X2U RELATED DB: PDB REMARK 900 RDCS WERE MEASURED IN PEG SOLUTION REMARK 900 RELATED ID: 1X2V RELATED DB: PDB REMARK 900 THIS STRUCTURE IS THE WILD DNA SEQUENCE (WITHOUT MISMATCH) THAT REMARK 900 SERVES AS REFERENCE REMARK 900 RELATED ID: 1X2X RELATED DB: PDB REMARK 900 RDCS WERE MEASURED IN BICELLES SDS SOLUTION, A TANDEM GT MISMATCHES REMARK 900 RELATED ID: 1X2Y RELATED DB: PDB REMARK 900 RDCS WERE MEASURED IN PF1 SOLUTION, A TANDEM GT MISMATCHES REMARK 900 RELATED ID: 1X30 RELATED DB: PDB REMARK 900 THIS STRUCTURE CONTAINS A TANDEM GT MISMATCHES DBREF 1X2Z A 1 12 PDB 1X2Z 1X2Z 1 12 DBREF 1X2Z B 13 24 PDB 1X2Z 1X2Z 13 24 SEQRES 1 A 12 DG DA DC DT DG DT DG DC DA DG DT DC SEQRES 1 B 12 DG DA DC DT DG DT DG DC DA DG DT DC CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000