HEADER CELL ADHESION 02-MAY-05 1X3B TITLE SOLUTION STRUCTURE OF THE FAS1 DOMAIN OF HUMAN TRANSFORMING GROWTH TITLE 2 FACTOR-BETA INDUCED PROTEIN IG-H3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSFORMING GROWTH FACTOR-BETA INDUCED PROTEIN IG-H3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FAS1 DOMAIN; COMPND 5 SYNONYM: BETA IG-H3, KERATO-EPITHELIN, RGD-CONTAINING COLLAGEN COMPND 6 ASSOCIATED PROTEIN, RGD-CAP; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TGFBI; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040524-06; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS BETA IG-H3, CELL ADHESION PROTEIN, EXTRACELLULAR MATRIX PROTEIN, KEYWDS 2 INTEGRIN-INTERACTING MOTIF, FAS1 DOMAIN, FASCICLIN, STRUCTURAL KEYWDS 3 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 4 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 5 INITIATIVE, RSGI, CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.YONEYAMA,T.TOMIZAWA,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 02-MAR-22 1X3B 1 REMARK SEQADV REVDAT 3 24-FEB-09 1X3B 1 VERSN REVDAT 2 17-JAN-06 1X3B 1 JRNL TITLE REVDAT 1 02-NOV-05 1X3B 0 JRNL AUTH M.YONEYAMA,T.TOMIZAWA,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FAS1 DOMAIN OF HUMAN TRANSFORMING JRNL TITL 2 GROWTH FACTOR-BETA INDUCED PROTEIN IG-H3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 1.0.7 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1X3B COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024325. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.39MM FAS1 DOMAIN U-15N, 13C; REMARK 210 20MM D-TRIS-HCL (PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.921, CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH REMARK 210 THE LEAST RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 10 H VAL A 14 1.49 REMARK 500 O ALA A 72 H LYS A 76 1.52 REMARK 500 H ALA A 120 O VAL A 133 1.55 REMARK 500 O LYS A 108 H VAL A 111 1.59 REMARK 500 O ASP A 13 H GLY A 17 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -61.46 -175.57 REMARK 500 1 SER A 5 -60.60 77.00 REMARK 500 1 GLU A 40 168.01 -45.78 REMARK 500 1 THR A 49 -166.48 -73.93 REMARK 500 1 LEU A 71 -70.04 -62.51 REMARK 500 1 ILE A 89 -122.07 -79.74 REMARK 500 1 ALA A 91 -55.05 -148.69 REMARK 500 1 ASN A 109 18.14 57.63 REMARK 500 1 ASP A 123 62.07 72.90 REMARK 500 1 ALA A 126 -166.70 -113.36 REMARK 500 1 ASN A 128 46.80 -151.99 REMARK 500 1 SER A 145 -58.04 -145.37 REMARK 500 2 PHE A 21 54.85 -108.28 REMARK 500 2 ASP A 81 40.46 -101.46 REMARK 500 2 GLU A 82 160.77 171.54 REMARK 500 2 SER A 86 67.05 -69.47 REMARK 500 2 ALA A 91 -51.06 -177.26 REMARK 500 2 ASN A 110 10.82 81.96 REMARK 500 2 ASN A 115 33.17 75.46 REMARK 500 2 ASP A 123 60.50 76.62 REMARK 500 2 ALA A 126 -166.35 -122.76 REMARK 500 2 ASN A 128 48.02 -158.58 REMARK 500 2 ASN A 136 148.01 179.39 REMARK 500 2 SER A 145 -58.10 -142.41 REMARK 500 3 MET A 8 128.66 66.17 REMARK 500 3 PHE A 21 58.37 -109.16 REMARK 500 3 ARG A 61 -73.65 -70.36 REMARK 500 3 GLU A 82 158.32 178.43 REMARK 500 3 ILE A 89 -112.84 -63.74 REMARK 500 3 ALA A 91 -71.87 79.38 REMARK 500 3 ASN A 109 18.75 59.59 REMARK 500 3 ASN A 115 31.56 75.02 REMARK 500 3 ASP A 123 65.92 63.32 REMARK 500 3 ALA A 126 -166.24 -122.15 REMARK 500 3 ASN A 128 49.43 -152.59 REMARK 500 3 ASN A 136 144.94 174.43 REMARK 500 3 SER A 141 104.16 -45.70 REMARK 500 4 SER A 2 88.66 67.91 REMARK 500 4 MET A 8 128.64 62.76 REMARK 500 4 PHE A 21 54.53 -103.80 REMARK 500 4 ARG A 61 -73.64 -64.22 REMARK 500 4 LEU A 71 -70.16 -50.21 REMARK 500 4 GLU A 82 158.71 171.65 REMARK 500 4 ALA A 91 -60.39 -175.87 REMARK 500 4 ASN A 109 18.92 56.50 REMARK 500 4 LYS A 116 30.16 73.64 REMARK 500 4 ASP A 123 61.62 75.72 REMARK 500 4 ALA A 126 -167.08 -112.09 REMARK 500 4 ASN A 128 47.35 -169.66 REMARK 500 4 ASN A 136 149.74 170.86 REMARK 500 REMARK 500 THIS ENTRY HAS 294 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001001558.1 RELATED DB: TARGETDB DBREF 1X3B A 8 140 UNP Q15582 BGH3_HUMAN 502 634 SEQADV 1X3B GLY A 1 UNP Q15582 CLONING ARTIFACT SEQADV 1X3B SER A 2 UNP Q15582 CLONING ARTIFACT SEQADV 1X3B SER A 3 UNP Q15582 CLONING ARTIFACT SEQADV 1X3B GLY A 4 UNP Q15582 CLONING ARTIFACT SEQADV 1X3B SER A 5 UNP Q15582 CLONING ARTIFACT SEQADV 1X3B SER A 6 UNP Q15582 CLONING ARTIFACT SEQADV 1X3B GLY A 7 UNP Q15582 CLONING ARTIFACT SEQADV 1X3B SER A 141 UNP Q15582 CLONING ARTIFACT SEQADV 1X3B GLY A 142 UNP Q15582 CLONING ARTIFACT SEQADV 1X3B PRO A 143 UNP Q15582 CLONING ARTIFACT SEQADV 1X3B SER A 144 UNP Q15582 CLONING ARTIFACT SEQADV 1X3B SER A 145 UNP Q15582 CLONING ARTIFACT SEQADV 1X3B GLY A 146 UNP Q15582 CLONING ARTIFACT SEQRES 1 A 146 GLY SER SER GLY SER SER GLY MET GLY THR VAL MET ASP SEQRES 2 A 146 VAL LEU LYS GLY ASP ASN ARG PHE SER MET LEU VAL ALA SEQRES 3 A 146 ALA ILE GLN SER ALA GLY LEU THR GLU THR LEU ASN ARG SEQRES 4 A 146 GLU GLY VAL TYR THR VAL PHE ALA PRO THR ASN GLU ALA SEQRES 5 A 146 PHE ARG ALA LEU PRO PRO ARG GLU ARG SER ARG LEU LEU SEQRES 6 A 146 GLY ASP ALA LYS GLU LEU ALA ASN ILE LEU LYS TYR HIS SEQRES 7 A 146 ILE GLY ASP GLU ILE LEU VAL SER GLY GLY ILE GLY ALA SEQRES 8 A 146 LEU VAL ARG LEU LYS SER LEU GLN GLY ASP LYS LEU GLU SEQRES 9 A 146 VAL SER LEU LYS ASN ASN VAL VAL SER VAL ASN LYS GLU SEQRES 10 A 146 PRO VAL ALA GLU PRO ASP ILE MET ALA THR ASN GLY VAL SEQRES 11 A 146 VAL HIS VAL ILE THR ASN VAL LEU GLN PRO SER GLY PRO SEQRES 12 A 146 SER SER GLY HELIX 1 1 THR A 10 ASP A 18 1 9 HELIX 2 2 PHE A 21 GLY A 32 1 12 HELIX 3 3 LEU A 33 ARG A 39 1 7 HELIX 4 4 ASN A 50 LEU A 56 1 7 HELIX 5 5 GLU A 60 ASP A 67 1 8 HELIX 6 6 ASP A 67 ILE A 79 1 13 SHEET 1 A 3 THR A 44 VAL A 45 0 SHEET 2 A 3 VAL A 130 ILE A 134 1 O HIS A 132 N VAL A 45 SHEET 3 A 3 VAL A 119 MET A 125 -1 N ALA A 120 O VAL A 133 SHEET 1 B 3 VAL A 93 LEU A 95 0 SHEET 2 B 3 LEU A 103 LYS A 108 -1 O LEU A 103 N LEU A 95 SHEET 3 B 3 VAL A 111 VAL A 114 -1 O VAL A 111 N LYS A 108 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1