HEADER DNA BINDING PROTEIN 02-MAY-05 1X3C TITLE SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC-BINDING DOMAIN OF HUMAN ZINC TITLE 2 FINGER PROTEIN 292 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER PROTEIN 292; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C2H2 TYPE ZINC-BINDING DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZNF292; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P041018-02; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS DNA BINDING, NUCLEAR PROTEIN, C2H2-TYPE ZINC FINGER, KIAA0530, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.YONEYAMA,T.TOMIZAWA,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 02-MAR-22 1X3C 1 REMARK SEQADV LINK REVDAT 3 24-FEB-09 1X3C 1 VERSN REVDAT 2 17-JAN-06 1X3C 1 JRNL TITLE REVDAT 1 02-NOV-05 1X3C 0 JRNL AUTH M.YONEYAMA,T.TOMIZAWA,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE C2H2 TYPE ZINC-BINDING DOMAIN OF JRNL TITL 2 HUMAN ZINC FINGER PROTEIN 292 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUENTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1X3C COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024326. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.90MM C2H2 TYPE ZINC-BINDING REMARK 210 DOMAIN U-15N, 13C; 20MM D-TRIS- REMARK 210 HCL (PH7.0); 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3; 0.05MM ZNCL2; REMARK 210 0.1MM NTA; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9295, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH REMARK 210 THE LEAST RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 9 108.25 -161.43 REMARK 500 1 PHE A 18 130.57 -34.49 REMARK 500 1 HIS A 32 115.77 -37.41 REMARK 500 1 GLN A 33 91.40 -60.61 REMARK 500 1 LYS A 54 52.35 33.87 REMARK 500 1 LEU A 57 154.03 -47.46 REMARK 500 1 PRO A 58 -172.25 -69.75 REMARK 500 1 GLU A 63 85.19 -57.83 REMARK 500 1 GLU A 67 -64.01 -108.28 REMARK 500 1 SER A 68 40.31 37.92 REMARK 500 1 PRO A 70 87.54 -69.78 REMARK 500 2 SER A 2 144.77 -172.93 REMARK 500 2 PRO A 11 -177.04 -69.81 REMARK 500 2 VAL A 12 119.77 -167.17 REMARK 500 2 GLU A 17 -39.10 -34.77 REMARK 500 2 HIS A 32 94.25 -59.80 REMARK 500 2 GLN A 33 85.48 -53.80 REMARK 500 2 LYS A 54 41.36 32.71 REMARK 500 2 ALA A 62 163.90 -41.97 REMARK 500 2 GLU A 63 45.75 -80.83 REMARK 500 2 VAL A 64 125.92 -34.69 REMARK 500 2 SER A 71 165.76 -43.55 REMARK 500 3 GLN A 14 122.80 -172.75 REMARK 500 3 CYS A 30 152.73 -37.38 REMARK 500 3 HIS A 32 90.02 -61.20 REMARK 500 3 CYS A 35 -43.81 -130.40 REMARK 500 3 LYS A 54 36.20 35.47 REMARK 500 3 SER A 61 45.05 -99.28 REMARK 500 3 GLU A 65 41.53 32.41 REMARK 500 4 VAL A 12 132.70 -175.01 REMARK 500 4 SER A 15 171.14 -48.75 REMARK 500 4 PRO A 19 3.51 -69.71 REMARK 500 4 HIS A 32 157.21 -39.67 REMARK 500 4 LYS A 54 37.47 33.88 REMARK 500 4 GLU A 63 44.43 -85.62 REMARK 500 4 GLU A 65 104.12 -56.91 REMARK 500 4 GLU A 67 130.62 -175.05 REMARK 500 4 PRO A 70 -175.26 -69.73 REMARK 500 4 SER A 72 93.25 -69.43 REMARK 500 5 PRO A 11 81.14 -69.77 REMARK 500 5 GLN A 14 168.71 -44.12 REMARK 500 5 THR A 20 -52.88 -134.85 REMARK 500 5 ARG A 21 -176.81 -172.86 REMARK 500 5 TYR A 22 167.88 -43.35 REMARK 500 5 CYS A 35 107.95 -51.07 REMARK 500 5 PHE A 36 43.41 -81.39 REMARK 500 5 ALA A 38 125.15 -174.24 REMARK 500 5 LYS A 54 40.66 31.55 REMARK 500 5 ALA A 62 174.13 -49.19 REMARK 500 5 VAL A 64 40.52 -81.32 REMARK 500 REMARK 500 THIS ENTRY HAS 195 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 30 SG REMARK 620 2 CYS A 35 SG 109.4 REMARK 620 3 HIS A 48 NE2 90.8 116.8 REMARK 620 4 HIS A 53 NE2 117.9 104.2 117.8 REMARK 620 N 1 2 3 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002000517.1 RELATED DB: TARGETDB DBREF 1X3C A 8 67 UNP O60281 ZN292_HUMAN 1340 1399 SEQADV 1X3C GLY A 1 UNP O60281 CLONING ARTIFACT SEQADV 1X3C SER A 2 UNP O60281 CLONING ARTIFACT SEQADV 1X3C SER A 3 UNP O60281 CLONING ARTIFACT SEQADV 1X3C GLY A 4 UNP O60281 CLONING ARTIFACT SEQADV 1X3C SER A 5 UNP O60281 CLONING ARTIFACT SEQADV 1X3C SER A 6 UNP O60281 CLONING ARTIFACT SEQADV 1X3C GLY A 7 UNP O60281 CLONING ARTIFACT SEQADV 1X3C SER A 68 UNP O60281 CLONING ARTIFACT SEQADV 1X3C GLY A 69 UNP O60281 CLONING ARTIFACT SEQADV 1X3C PRO A 70 UNP O60281 CLONING ARTIFACT SEQADV 1X3C SER A 71 UNP O60281 CLONING ARTIFACT SEQADV 1X3C SER A 72 UNP O60281 CLONING ARTIFACT SEQADV 1X3C GLY A 73 UNP O60281 CLONING ARTIFACT SEQRES 1 A 73 GLY SER SER GLY SER SER GLY ARG LYS LYS PRO VAL SER SEQRES 2 A 73 GLN SER LEU GLU PHE PRO THR ARG TYR SER PRO TYR ARG SEQRES 3 A 73 PRO TYR ARG CYS VAL HIS GLN GLY CYS PHE ALA ALA PHE SEQRES 4 A 73 THR ILE GLN GLN ASN LEU ILE LEU HIS TYR GLN ALA VAL SEQRES 5 A 73 HIS LYS SER ASP LEU PRO ALA PHE SER ALA GLU VAL GLU SEQRES 6 A 73 GLU GLU SER GLY PRO SER SER GLY HET ZN A 201 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 ILE A 41 HIS A 53 1 13 SHEET 1 A 2 TYR A 28 CYS A 30 0 SHEET 2 A 2 ALA A 37 PHE A 39 -1 N CYS A 30 O TYR A 28 LINK SG CYS A 30 ZN ZN A 201 1555 1555 2.33 LINK SG CYS A 35 ZN ZN A 201 1555 1555 2.37 LINK NE2 HIS A 48 ZN ZN A 201 1555 1555 2.33 LINK NE2 HIS A 53 ZN ZN A 201 1555 1555 2.34 SITE 1 AC1 4 CYS A 30 CYS A 35 HIS A 48 HIS A 53 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1