HEADER ENDOCYTOSIS/EXOCYTOSIS 13-MAY-05 1X43 TITLE SOLUTION STRUCTURE OF THE SH3 DOMAIN OF ENDOPHILIN B1 (SH3G1B1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SH3 DOMAIN GRB2-LIKE PROTEIN B1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN; COMPND 5 SYNONYM: ENDOPHILIN B1; COMPND 6 EC: 2.3.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIKEN CDNA LIBRARY 4930422M04; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P041220-01; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS SH3 DOMAIN, GRB2-LIKE PROTEIN B1, ENDOPHILIN B1, STRUCTURAL GENOMICS, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 4 ENDOCYTOSIS-EXOCYTOSIS COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.-R.QIN,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 02-MAR-22 1X43 1 REMARK SEQADV REVDAT 2 24-FEB-09 1X43 1 VERSN REVDAT 1 13-NOV-05 1X43 0 JRNL AUTH X.-R.QIN,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SH3 DOMAIN OF ENDOPHILIN B1 JRNL TITL 2 (SH3G1B1) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT,P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1X43 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024353. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.52MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL(PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9296, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 42.33 -103.03 REMARK 500 1 THR A 32 -38.07 -38.82 REMARK 500 1 ASP A 39 42.37 71.40 REMARK 500 1 MET A 50 166.99 -43.96 REMARK 500 1 LEU A 73 106.46 -40.21 REMARK 500 2 GLU A 13 41.02 -86.78 REMARK 500 2 ASP A 39 40.02 75.01 REMARK 500 2 MET A 50 156.07 -44.18 REMARK 500 3 GLU A 13 41.32 -89.83 REMARK 500 3 ASP A 39 33.21 71.48 REMARK 500 3 PRO A 78 1.80 -69.80 REMARK 500 4 SER A 6 41.27 73.05 REMARK 500 4 GLU A 13 -50.62 -127.96 REMARK 500 4 SER A 15 96.40 -69.39 REMARK 500 4 ASN A 16 46.92 -84.00 REMARK 500 4 THR A 32 -37.23 -38.69 REMARK 500 4 ASP A 39 36.80 74.97 REMARK 500 4 ASN A 61 43.45 -108.78 REMARK 500 4 SER A 76 41.33 -98.45 REMARK 500 5 ASP A 39 44.38 72.86 REMARK 500 5 ASN A 61 43.57 -106.95 REMARK 500 5 LEU A 74 45.29 -82.72 REMARK 500 5 SER A 79 174.58 -56.09 REMARK 500 6 GLU A 13 43.52 -89.71 REMARK 500 6 SER A 15 51.84 -92.80 REMARK 500 6 ASN A 16 39.32 -85.98 REMARK 500 6 MET A 50 151.37 -41.97 REMARK 500 6 LEU A 73 106.19 -46.67 REMARK 500 6 LEU A 74 83.66 -69.18 REMARK 500 6 SER A 76 112.29 -168.92 REMARK 500 6 SER A 79 -61.06 -101.39 REMARK 500 7 ASP A 10 105.10 -173.72 REMARK 500 7 SER A 14 48.21 -85.80 REMARK 500 7 ALA A 28 140.72 -37.61 REMARK 500 7 ASP A 39 43.15 75.02 REMARK 500 7 VAL A 48 126.00 -37.36 REMARK 500 7 MET A 50 148.90 -34.89 REMARK 500 8 SER A 14 129.58 -172.07 REMARK 500 8 ASP A 39 43.86 75.07 REMARK 500 8 LEU A 73 105.43 -45.52 REMARK 500 8 ASN A 75 118.59 -171.59 REMARK 500 8 PRO A 78 97.11 -69.76 REMARK 500 8 SER A 79 152.52 -46.60 REMARK 500 8 SER A 80 128.81 -173.20 REMARK 500 9 SER A 15 59.58 -98.67 REMARK 500 9 ASN A 16 47.06 -92.36 REMARK 500 9 ALA A 20 146.63 -175.01 REMARK 500 9 THR A 32 -37.01 -39.30 REMARK 500 9 ASP A 39 44.73 71.51 REMARK 500 9 LEU A 73 105.75 -39.00 REMARK 500 REMARK 500 THIS ENTRY HAS 111 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT008001379.1 RELATED DB: TARGETDB DBREF 1X43 A 8 75 UNP Q9JK48 SHLB1_MOUSE 298 365 SEQADV 1X43 GLY A 1 UNP Q9JK48 CLONING ARTIFACT SEQADV 1X43 SER A 2 UNP Q9JK48 CLONING ARTIFACT SEQADV 1X43 SER A 3 UNP Q9JK48 CLONING ARTIFACT SEQADV 1X43 GLY A 4 UNP Q9JK48 CLONING ARTIFACT SEQADV 1X43 SER A 5 UNP Q9JK48 CLONING ARTIFACT SEQADV 1X43 SER A 6 UNP Q9JK48 CLONING ARTIFACT SEQADV 1X43 GLY A 7 UNP Q9JK48 CLONING ARTIFACT SEQADV 1X43 SER A 76 UNP Q9JK48 CLONING ARTIFACT SEQADV 1X43 GLY A 77 UNP Q9JK48 CLONING ARTIFACT SEQADV 1X43 PRO A 78 UNP Q9JK48 CLONING ARTIFACT SEQADV 1X43 SER A 79 UNP Q9JK48 CLONING ARTIFACT SEQADV 1X43 SER A 80 UNP Q9JK48 CLONING ARTIFACT SEQADV 1X43 GLY A 81 UNP Q9JK48 CLONING ARTIFACT SEQRES 1 A 81 GLY SER SER GLY SER SER GLY LEU ASN ASP LEU LYS GLU SEQRES 2 A 81 SER SER ASN ASN ARG LYS ALA ARG VAL LEU TYR ASP TYR SEQRES 3 A 81 ASP ALA ALA ASN SER THR GLU LEU SER LEU LEU ALA ASP SEQRES 4 A 81 GLU VAL ILE THR VAL PHE SER VAL VAL GLY MET ASP SER SEQRES 5 A 81 ASP TRP LEU MET GLY GLU ARG GLY ASN GLN LYS GLY LYS SEQRES 6 A 81 VAL PRO ILE THR TYR LEU GLU LEU LEU ASN SER GLY PRO SEQRES 7 A 81 SER SER GLY SHEET 1 A 5 GLN A 62 PRO A 67 0 SHEET 2 A 5 TRP A 54 ARG A 59 -1 N LEU A 55 O VAL A 66 SHEET 3 A 5 VAL A 41 PHE A 45 -1 N PHE A 45 O MET A 56 SHEET 4 A 5 ARG A 18 VAL A 22 -1 N ARG A 18 O VAL A 44 SHEET 5 A 5 LEU A 71 LEU A 73 -1 O GLU A 72 N ARG A 21 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1