data_1X48 # _entry.id 1X48 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1X48 pdb_00001x48 10.2210/pdb1x48/pdb RCSB RCSB024358 ? ? WWPDB D_1000024358 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id mmt008000608.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1X48 _pdbx_database_status.recvd_initial_deposition_date 2005-05-14 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'He, F.' 1 'Muto, Y.' 2 'Inoue, M.' 3 'Tarada, T.' 4 'Shirouzu, M.' 5 'Kigawa, T.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution structure of the second DSRM domain in Interferon-induced, double-stranded RNA-activated protein kinase' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'He, F.' 1 ? primary 'Muto, Y.' 2 ? primary 'Inoue, M.' 3 ? primary 'Tarada, T.' 4 ? primary 'Shirouzu, M.' 5 ? primary 'Kigawa, T.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Interferon-induced, double-stranded RNA-activated protein kinase' _entity.formula_weight 9274.507 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 2.7.1.- _entity.pdbx_mutation ? _entity.pdbx_fragment 'DSRM domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Interferon-inducible RNA-dependent protein kinase, p68 kinase, P1/eIF-2A protein kinase, Serine/threonine-protein kinase TIK' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGYIGLVNSFAQKKKLSVNYEQCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPPKTA GTSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGYIGLVNSFAQKKKLSVNYEQCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPPKTA GTSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier mmt008000608.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 TYR n 1 9 ILE n 1 10 GLY n 1 11 LEU n 1 12 VAL n 1 13 ASN n 1 14 SER n 1 15 PHE n 1 16 ALA n 1 17 GLN n 1 18 LYS n 1 19 LYS n 1 20 LYS n 1 21 LEU n 1 22 SER n 1 23 VAL n 1 24 ASN n 1 25 TYR n 1 26 GLU n 1 27 GLN n 1 28 CYS n 1 29 GLU n 1 30 PRO n 1 31 ASN n 1 32 SER n 1 33 GLU n 1 34 LEU n 1 35 PRO n 1 36 GLN n 1 37 ARG n 1 38 PHE n 1 39 ILE n 1 40 CYS n 1 41 LYS n 1 42 CYS n 1 43 LYS n 1 44 ILE n 1 45 GLY n 1 46 GLN n 1 47 THR n 1 48 MET n 1 49 TYR n 1 50 GLY n 1 51 THR n 1 52 GLY n 1 53 SER n 1 54 GLY n 1 55 VAL n 1 56 THR n 1 57 LYS n 1 58 GLN n 1 59 GLU n 1 60 ALA n 1 61 LYS n 1 62 GLN n 1 63 LEU n 1 64 ALA n 1 65 ALA n 1 66 LYS n 1 67 GLU n 1 68 ALA n 1 69 TYR n 1 70 GLN n 1 71 LYS n 1 72 LEU n 1 73 LEU n 1 74 LYS n 1 75 SER n 1 76 PRO n 1 77 PRO n 1 78 LYS n 1 79 THR n 1 80 ALA n 1 81 GLY n 1 82 THR n 1 83 SER n 1 84 GLY n 1 85 PRO n 1 86 SER n 1 87 SER n 1 88 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene 'Prkr, Eif2ak2, Pkr, Tik' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P040712-16 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code E2AK2_MOUSE _struct_ref.pdbx_db_accession Q03963 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code YIGLVNSFAQKKKLSVNYEQCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPPKTAGT _struct_ref.pdbx_align_begin 96 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1X48 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 82 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q03963 _struct_ref_seq.db_align_beg 96 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 170 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 82 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1X48 GLY A 1 ? UNP Q03963 ? ? 'cloning artifact' 1 1 1 1X48 SER A 2 ? UNP Q03963 ? ? 'cloning artifact' 2 2 1 1X48 SER A 3 ? UNP Q03963 ? ? 'cloning artifact' 3 3 1 1X48 GLY A 4 ? UNP Q03963 ? ? 'cloning artifact' 4 4 1 1X48 SER A 5 ? UNP Q03963 ? ? 'cloning artifact' 5 5 1 1X48 SER A 6 ? UNP Q03963 ? ? 'cloning artifact' 6 6 1 1X48 GLY A 7 ? UNP Q03963 ? ? 'cloning artifact' 7 7 1 1X48 SER A 83 ? UNP Q03963 ? ? 'cloning artifact' 83 8 1 1X48 GLY A 84 ? UNP Q03963 ? ? 'cloning artifact' 84 9 1 1X48 PRO A 85 ? UNP Q03963 ? ? 'cloning artifact' 85 10 1 1X48 SER A 86 ? UNP Q03963 ? ? 'cloning artifact' 86 11 1 1X48 SER A 87 ? UNP Q03963 ? ? 'cloning artifact' 87 12 1 1X48 GLY A 88 ? UNP Q03963 ? ? 'cloning artifact' 88 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '20mM phosphate buffer NA; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 1X48 _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1X48 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1X48 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 2.6 Bruker 1 processing NMRPipe 20031121 Delaglio,F. 2 'data analysis' NMRView 5.0.4 Johnson,B.A. 3 'data analysis' KUJIRA 0.863 Kobayashi,N. 4 'structure solution' CYANA 2.0.17 Guntert,P. 5 refinement CYANA 2.0.17 Guntert,P. 6 # _exptl.entry_id 1X48 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1X48 _struct.title 'Solution structure of the second DSRM domain in Interferon-induced, double-stranded RNA-activated protein kinase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1X48 _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text ;structure genomics, DSRM domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, RNA BINDING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR A 8 ? LYS A 18 ? TYR A 8 LYS A 18 1 ? 11 HELX_P HELX_P2 2 LYS A 57 ? LYS A 74 ? LYS A 57 LYS A 74 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 LEU 34 A . ? LEU 34 A PRO 35 A ? PRO 35 A 1 -0.22 2 LEU 34 A . ? LEU 34 A PRO 35 A ? PRO 35 A 2 -0.10 3 LEU 34 A . ? LEU 34 A PRO 35 A ? PRO 35 A 3 -0.15 4 LEU 34 A . ? LEU 34 A PRO 35 A ? PRO 35 A 4 -0.11 5 LEU 34 A . ? LEU 34 A PRO 35 A ? PRO 35 A 5 -0.17 6 LEU 34 A . ? LEU 34 A PRO 35 A ? PRO 35 A 6 -0.13 7 LEU 34 A . ? LEU 34 A PRO 35 A ? PRO 35 A 7 -0.13 8 LEU 34 A . ? LEU 34 A PRO 35 A ? PRO 35 A 8 -0.12 9 LEU 34 A . ? LEU 34 A PRO 35 A ? PRO 35 A 9 -0.14 10 LEU 34 A . ? LEU 34 A PRO 35 A ? PRO 35 A 10 -0.15 11 LEU 34 A . ? LEU 34 A PRO 35 A ? PRO 35 A 11 -0.14 12 LEU 34 A . ? LEU 34 A PRO 35 A ? PRO 35 A 12 -0.07 13 LEU 34 A . ? LEU 34 A PRO 35 A ? PRO 35 A 13 -0.11 14 LEU 34 A . ? LEU 34 A PRO 35 A ? PRO 35 A 14 -0.15 15 LEU 34 A . ? LEU 34 A PRO 35 A ? PRO 35 A 15 -0.16 16 LEU 34 A . ? LEU 34 A PRO 35 A ? PRO 35 A 16 -0.17 17 LEU 34 A . ? LEU 34 A PRO 35 A ? PRO 35 A 17 -0.04 18 LEU 34 A . ? LEU 34 A PRO 35 A ? PRO 35 A 18 -0.06 19 LEU 34 A . ? LEU 34 A PRO 35 A ? PRO 35 A 19 -0.13 20 LEU 34 A . ? LEU 34 A PRO 35 A ? PRO 35 A 20 -0.14 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 23 ? GLN A 27 ? VAL A 23 GLN A 27 A 2 PHE A 38 ? ILE A 44 ? PHE A 38 ILE A 44 A 3 MET A 48 ? GLY A 54 ? MET A 48 GLY A 54 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASN A 24 ? N ASN A 24 O LYS A 43 ? O LYS A 43 A 2 3 N CYS A 40 ? N CYS A 40 O GLY A 52 ? O GLY A 52 # _database_PDB_matrix.entry_id 1X48 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1X48 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 TYR 8 8 8 TYR TYR A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 PHE 15 15 15 PHE PHE A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 GLN 17 17 17 GLN GLN A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 SER 22 22 22 SER SER A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 ASN 24 24 24 ASN ASN A . n A 1 25 TYR 25 25 25 TYR TYR A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 GLN 27 27 27 GLN GLN A . n A 1 28 CYS 28 28 28 CYS CYS A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 PRO 30 30 30 PRO PRO A . n A 1 31 ASN 31 31 31 ASN ASN A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 PRO 35 35 35 PRO PRO A . n A 1 36 GLN 36 36 36 GLN GLN A . n A 1 37 ARG 37 37 37 ARG ARG A . n A 1 38 PHE 38 38 38 PHE PHE A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 CYS 40 40 40 CYS CYS A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 CYS 42 42 42 CYS CYS A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 GLN 46 46 46 GLN GLN A . n A 1 47 THR 47 47 47 THR THR A . n A 1 48 MET 48 48 48 MET MET A . n A 1 49 TYR 49 49 49 TYR TYR A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 SER 53 53 53 SER SER A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 VAL 55 55 55 VAL VAL A . n A 1 56 THR 56 56 56 THR THR A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 GLN 62 62 62 GLN GLN A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 TYR 69 69 69 TYR TYR A . n A 1 70 GLN 70 70 70 GLN GLN A . n A 1 71 LYS 71 71 71 LYS LYS A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 PRO 76 76 76 PRO PRO A . n A 1 77 PRO 77 77 77 PRO PRO A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 THR 79 79 79 THR THR A . n A 1 80 ALA 80 80 80 ALA ALA A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 THR 82 82 82 THR THR A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 GLY 84 84 84 GLY GLY A . n A 1 85 PRO 85 85 85 PRO PRO A . n A 1 86 SER 86 86 86 SER SER A . n A 1 87 SER 87 87 87 SER SER A . n A 1 88 GLY 88 88 88 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-14 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_remark.id 650 _pdbx_database_remark.text ;HELIX DETERMINATION METHOD: AUTHOR DETERMINED ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 20 ? ? 39.56 39.83 2 1 GLU A 33 ? ? -39.05 -70.85 3 1 PRO A 35 ? ? -69.73 -179.60 4 1 ALA A 60 ? ? -69.00 -72.75 5 1 LYS A 78 ? ? -47.34 101.47 6 2 SER A 3 ? ? -46.94 150.36 7 2 SER A 5 ? ? -93.67 45.09 8 2 GLN A 62 ? ? -61.11 -72.84 9 2 LYS A 74 ? ? -81.56 -74.39 10 2 ALA A 80 ? ? -173.34 141.77 11 3 SER A 2 ? ? -133.18 -50.75 12 3 ILE A 9 ? ? -34.04 -39.40 13 3 CYS A 28 ? ? -50.83 -179.36 14 3 GLN A 62 ? ? -50.67 -72.47 15 4 ILE A 9 ? ? -34.33 -39.21 16 4 PRO A 30 ? ? -69.74 -163.98 17 4 ASN A 31 ? ? -55.96 178.14 18 4 TYR A 49 ? ? -121.79 -59.94 19 4 GLN A 62 ? ? -38.87 -70.19 20 4 LYS A 78 ? ? -55.84 88.84 21 4 THR A 82 ? ? -57.63 170.44 22 5 SER A 3 ? ? -88.32 49.15 23 5 SER A 6 ? ? -110.25 57.60 24 5 ASN A 13 ? ? -35.68 -39.46 25 5 GLN A 62 ? ? -82.93 -70.42 26 5 ALA A 64 ? ? -36.12 -30.04 27 5 SER A 86 ? ? -41.09 107.77 28 6 ILE A 9 ? ? -33.96 -35.45 29 6 GLU A 33 ? ? -35.28 121.26 30 6 LYS A 61 ? ? -38.70 -28.77 31 6 GLN A 62 ? ? -70.83 -70.44 32 7 ILE A 9 ? ? -34.47 -39.10 33 7 GLU A 33 ? ? -171.73 125.84 34 7 GLN A 46 ? ? 47.26 25.00 35 7 ALA A 60 ? ? -69.60 -71.27 36 7 GLN A 62 ? ? -57.25 -72.06 37 7 SER A 87 ? ? -97.77 -60.09 38 8 ASN A 13 ? ? -34.61 -72.09 39 8 CYS A 28 ? ? -38.36 157.48 40 8 PRO A 30 ? ? -69.77 -166.47 41 8 SER A 32 ? ? -133.16 -39.55 42 8 PRO A 35 ? ? -69.76 -178.96 43 8 ALA A 60 ? ? -65.17 -72.64 44 8 LYS A 61 ? ? -36.87 -31.54 45 8 ALA A 64 ? ? -39.02 -37.49 46 8 LYS A 78 ? ? 34.40 47.61 47 8 THR A 82 ? ? 39.83 40.32 48 9 SER A 6 ? ? -173.52 130.42 49 9 ASN A 31 ? ? -37.31 -31.42 50 9 SER A 32 ? ? -97.81 -65.92 51 9 GLN A 36 ? ? -38.29 96.94 52 9 PRO A 85 ? ? -69.77 90.57 53 10 TYR A 49 ? ? -121.57 -60.27 54 10 ALA A 60 ? ? -74.92 -71.96 55 10 GLN A 62 ? ? -78.46 -72.62 56 10 SER A 87 ? ? -92.04 41.72 57 11 ILE A 9 ? ? -34.71 -38.99 58 11 ASN A 31 ? ? -103.79 69.32 59 11 TYR A 49 ? ? -106.19 -60.81 60 11 ALA A 64 ? ? -34.65 -36.09 61 11 PRO A 85 ? ? -69.79 97.66 62 11 SER A 86 ? ? 34.38 42.53 63 12 ILE A 9 ? ? -37.46 -38.20 64 12 SER A 32 ? ? -92.64 38.66 65 12 TYR A 49 ? ? -104.90 -62.94 66 12 LYS A 61 ? ? -38.63 -29.27 67 12 THR A 79 ? ? -82.92 44.02 68 12 SER A 83 ? ? -171.31 125.11 69 12 PRO A 85 ? ? -69.72 94.93 70 13 SER A 6 ? ? -110.53 -70.34 71 13 TYR A 49 ? ? -121.20 -58.88 72 13 GLN A 62 ? ? -63.46 -71.22 73 13 ALA A 64 ? ? -33.91 -39.73 74 13 PRO A 85 ? ? -69.73 -177.79 75 13 SER A 86 ? ? -131.75 -47.02 76 14 TYR A 8 ? ? -39.64 -28.60 77 14 PRO A 30 ? ? -69.72 92.17 78 14 ASN A 31 ? ? -102.50 46.70 79 14 ALA A 80 ? ? -94.12 55.53 80 15 SER A 32 ? ? -91.87 30.42 81 15 GLN A 62 ? ? -58.41 -70.51 82 15 ALA A 64 ? ? -36.23 -38.93 83 15 PRO A 77 ? ? -69.75 -173.91 84 15 PRO A 85 ? ? -69.78 -175.41 85 15 SER A 87 ? ? -91.91 42.14 86 16 ILE A 9 ? ? -34.26 -38.99 87 16 ASN A 13 ? ? -34.88 -35.71 88 16 CYS A 28 ? ? -43.82 155.89 89 16 PRO A 30 ? ? -69.70 2.91 90 16 ASN A 31 ? ? -34.32 125.80 91 16 SER A 32 ? ? -66.34 97.75 92 16 PRO A 35 ? ? -69.74 -178.81 93 16 LYS A 66 ? ? -35.96 -36.58 94 16 LYS A 71 ? ? -38.91 -39.77 95 17 CYS A 28 ? ? -47.67 153.80 96 18 ILE A 9 ? ? -33.70 -39.84 97 18 TYR A 49 ? ? -108.58 -62.52 98 19 SER A 2 ? ? -56.27 87.17 99 19 SER A 6 ? ? -67.50 94.13 100 20 SER A 2 ? ? -69.29 80.51 101 20 SER A 3 ? ? -59.33 109.84 102 20 PHE A 15 ? ? -47.25 -70.54 103 20 GLN A 62 ? ? -66.84 -72.78 104 20 ALA A 64 ? ? -33.72 -33.86 105 20 LYS A 74 ? ? -71.01 -71.65 106 20 LYS A 78 ? ? -174.84 125.04 107 20 SER A 83 ? ? -81.07 42.03 #