HEADER RNA BINDING PROTEIN 14-MAY-05 1X4D TITLE SOLUTION STRUCTURE OF RRM DOMAIN IN MATRIN 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATRIN 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RRM DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MATR3; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: 040809-03; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS STRUCTURAL GENOMICS, RRM DOMAIN, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 10-NOV-21 1X4D 1 REMARK SEQADV REVDAT 2 24-FEB-09 1X4D 1 VERSN REVDAT 1 14-NOV-05 1X4D 0 JRNL AUTH F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RRM DOMAIN IN MATRIN 3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 2.0.29 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT,P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1X4D COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024363. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8MM U-15,13C; 20MM PHOSPHATE REMARK 210 BUFFER NA; 100MM NACL; 1MM D-DTT; REMARK 210 0.02% NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.863, CYANA 2.0.29 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 42.08 -145.04 REMARK 500 1 ARG A 15 -168.82 43.40 REMARK 500 1 PRO A 39 2.21 -69.83 REMARK 500 1 ASN A 45 127.98 -172.71 REMARK 500 1 ASN A 50 33.10 -95.93 REMARK 500 1 LEU A 88 76.54 -113.98 REMARK 500 1 GLN A 90 71.57 -152.90 REMARK 500 1 TYR A 92 75.95 60.95 REMARK 500 1 ILE A 95 -36.95 -35.92 REMARK 500 1 SER A 101 81.80 178.08 REMARK 500 2 SER A 2 81.72 62.37 REMARK 500 2 SER A 5 124.86 63.02 REMARK 500 2 SER A 6 107.73 -58.47 REMARK 500 2 GLN A 8 -51.95 -174.75 REMARK 500 2 ARG A 15 164.75 -46.03 REMARK 500 2 PRO A 39 2.02 -69.78 REMARK 500 2 ASN A 45 128.07 -174.71 REMARK 500 2 ASN A 50 41.18 -94.56 REMARK 500 2 LYS A 51 -45.72 -130.55 REMARK 500 2 ASN A 53 48.88 -86.35 REMARK 500 2 LYS A 91 151.07 62.69 REMARK 500 2 TYR A 92 -36.17 -138.15 REMARK 500 2 LYS A 93 35.08 163.25 REMARK 500 2 ARG A 94 119.35 60.82 REMARK 500 2 LYS A 96 125.81 -179.41 REMARK 500 3 SER A 2 114.51 61.59 REMARK 500 3 ARG A 11 156.45 178.70 REMARK 500 3 ARG A 15 150.44 -34.46 REMARK 500 3 ASP A 22 21.33 47.85 REMARK 500 3 ARG A 30 -25.49 -39.93 REMARK 500 3 PRO A 39 0.38 -69.67 REMARK 500 3 ASN A 45 128.02 -173.83 REMARK 500 3 ASN A 50 32.72 -91.31 REMARK 500 3 ASN A 53 49.65 -90.67 REMARK 500 3 LEU A 88 71.24 -110.98 REMARK 500 3 SER A 89 175.50 -57.58 REMARK 500 3 LYS A 91 149.98 61.18 REMARK 500 3 TYR A 92 -170.89 171.26 REMARK 500 3 LYS A 93 40.00 -82.79 REMARK 500 3 ARG A 94 84.66 34.77 REMARK 500 3 LYS A 96 -62.97 -165.89 REMARK 500 3 PRO A 99 89.36 -69.71 REMARK 500 3 SER A 101 -58.76 -155.93 REMARK 500 4 SER A 2 -69.81 75.22 REMARK 500 4 SER A 5 106.51 175.70 REMARK 500 4 ARG A 15 154.32 -40.05 REMARK 500 4 PRO A 39 2.04 -69.76 REMARK 500 4 ASN A 45 127.87 -173.92 REMARK 500 4 ASN A 50 38.88 -96.77 REMARK 500 4 ASN A 53 50.06 -93.60 REMARK 500 REMARK 500 THIS ENTRY HAS 289 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT008001240.1 RELATED DB: TARGETDB DBREF 1X4D A 8 96 UNP Q8K310 MATR3_MOUSE 390 478 SEQADV 1X4D GLY A 1 UNP Q8K310 CLONING ARTIFACT SEQADV 1X4D SER A 2 UNP Q8K310 CLONING ARTIFACT SEQADV 1X4D SER A 3 UNP Q8K310 CLONING ARTIFACT SEQADV 1X4D GLY A 4 UNP Q8K310 CLONING ARTIFACT SEQADV 1X4D SER A 5 UNP Q8K310 CLONING ARTIFACT SEQADV 1X4D SER A 6 UNP Q8K310 CLONING ARTIFACT SEQADV 1X4D GLY A 7 UNP Q8K310 CLONING ARTIFACT SEQADV 1X4D ARG A 15 UNP Q8K310 SER 397 ENGINEERED MUTATION SEQADV 1X4D SER A 97 UNP Q8K310 CLONING ARTIFACT SEQADV 1X4D GLY A 98 UNP Q8K310 CLONING ARTIFACT SEQADV 1X4D PRO A 99 UNP Q8K310 CLONING ARTIFACT SEQADV 1X4D SER A 100 UNP Q8K310 CLONING ARTIFACT SEQADV 1X4D SER A 101 UNP Q8K310 CLONING ARTIFACT SEQADV 1X4D GLY A 102 UNP Q8K310 CLONING ARTIFACT SEQRES 1 A 102 GLY SER SER GLY SER SER GLY GLN LYS GLY ARG VAL GLU SEQRES 2 A 102 THR ARG ARG VAL VAL HIS ILE MET ASP PHE GLN ARG GLY SEQRES 3 A 102 LYS ASN LEU ARG TYR GLN LEU LEU GLN LEU VAL GLU PRO SEQRES 4 A 102 PHE GLY VAL ILE SER ASN HIS LEU ILE LEU ASN LYS ILE SEQRES 5 A 102 ASN GLU ALA PHE ILE GLU MET ALA THR THR GLU ASP ALA SEQRES 6 A 102 GLN ALA ALA VAL ASP TYR TYR THR THR THR PRO ALA LEU SEQRES 7 A 102 VAL PHE GLY LYS PRO VAL ARG VAL HIS LEU SER GLN LYS SEQRES 8 A 102 TYR LYS ARG ILE LYS SER GLY PRO SER SER GLY HELIX 1 1 LEU A 29 LEU A 34 1 6 HELIX 2 2 GLU A 38 PHE A 40 5 3 HELIX 3 3 THR A 62 THR A 74 1 13 SHEET 1 A 4 VAL A 17 MET A 21 0 SHEET 2 A 4 ILE A 43 ILE A 48 -1 SHEET 3 A 4 ALA A 55 MET A 59 -1 SHEET 4 A 4 LEU A 78 VAL A 79 -1 SHEET 1 B 2 LYS A 82 PRO A 83 0 SHEET 2 B 2 ARG A 85 SER A 89 -1 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1