data_1X4Z # _entry.id 1X4Z # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1X4Z pdb_00001x4z 10.2210/pdb1x4z/pdb RCSB RCSB024385 ? ? WWPDB D_1000024385 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id mmt008000800.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1X4Z _pdbx_database_status.recvd_initial_deposition_date 2005-05-15 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tomizawa, T.' 1 'Kigawa, T.' 2 'Koshiba, S.' 3 'Inoue, M.' 4 'Yokoyama, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title ;Solution structure of the 2nd fibronectin type III domain from mouse biregional cell adhesion molecule-related/down-regulated oncogenes (Cdon) binding protein ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tomizawa, T.' 1 ? primary 'Kigawa, T.' 2 ? primary 'Koshiba, S.' 3 ? primary 'Inoue, M.' 4 ? primary 'Yokoyama, S.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'biregional cell adhesion molecule-related/down-regulated oncogenes (Cdon)binding protein' _entity.formula_weight 12820.342 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'fibronectin type III (fn3) domain' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGSQPDHGRLSPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEI TGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGSQPDHGRLSPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEI TGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier mmt008000800.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 SER n 1 9 GLN n 1 10 PRO n 1 11 ASP n 1 12 HIS n 1 13 GLY n 1 14 ARG n 1 15 LEU n 1 16 SER n 1 17 PRO n 1 18 PRO n 1 19 GLU n 1 20 ALA n 1 21 PRO n 1 22 ASP n 1 23 ARG n 1 24 PRO n 1 25 THR n 1 26 ILE n 1 27 SER n 1 28 THR n 1 29 ALA n 1 30 SER n 1 31 GLU n 1 32 THR n 1 33 SER n 1 34 VAL n 1 35 TYR n 1 36 VAL n 1 37 THR n 1 38 TRP n 1 39 ILE n 1 40 PRO n 1 41 ARG n 1 42 GLY n 1 43 ASN n 1 44 GLY n 1 45 GLY n 1 46 PHE n 1 47 PRO n 1 48 ILE n 1 49 GLN n 1 50 SER n 1 51 PHE n 1 52 ARG n 1 53 VAL n 1 54 GLU n 1 55 TYR n 1 56 LYS n 1 57 LYS n 1 58 LEU n 1 59 LYS n 1 60 LYS n 1 61 VAL n 1 62 GLY n 1 63 ASP n 1 64 TRP n 1 65 ILE n 1 66 LEU n 1 67 ALA n 1 68 THR n 1 69 SER n 1 70 ALA n 1 71 ILE n 1 72 PRO n 1 73 PRO n 1 74 SER n 1 75 ARG n 1 76 LEU n 1 77 SER n 1 78 VAL n 1 79 GLU n 1 80 ILE n 1 81 THR n 1 82 GLY n 1 83 LEU n 1 84 GLU n 1 85 LYS n 1 86 GLY n 1 87 ILE n 1 88 SER n 1 89 TYR n 1 90 LYS n 1 91 PHE n 1 92 ARG n 1 93 VAL n 1 94 ARG n 1 95 ALA n 1 96 LEU n 1 97 ASN n 1 98 MET n 1 99 LEU n 1 100 GLY n 1 101 GLU n 1 102 SER n 1 103 GLU n 1 104 PRO n 1 105 SER n 1 106 ALA n 1 107 PRO n 1 108 SER n 1 109 ARG n 1 110 PRO n 1 111 TYR n 1 112 VAL n 1 113 VAL n 1 114 SER n 1 115 GLY n 1 116 SER n 1 117 GLY n 1 118 PRO n 1 119 SER n 1 120 SER n 1 121 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene Boc _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P040719-11 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q6KAM5_MOUSE _struct_ref.pdbx_db_accession Q6KAM5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SQPDHGRLSPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGI SYKFRVRALNMLGESEPSAPSRPYVVSG ; _struct_ref.pdbx_align_begin 591 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1X4Z _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 115 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q6KAM5 _struct_ref_seq.db_align_beg 591 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 698 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 115 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1X4Z GLY A 1 ? UNP Q6KAM5 ? ? 'cloning artifact' 1 1 1 1X4Z SER A 2 ? UNP Q6KAM5 ? ? 'cloning artifact' 2 2 1 1X4Z SER A 3 ? UNP Q6KAM5 ? ? 'cloning artifact' 3 3 1 1X4Z GLY A 4 ? UNP Q6KAM5 ? ? 'cloning artifact' 4 4 1 1X4Z SER A 5 ? UNP Q6KAM5 ? ? 'cloning artifact' 5 5 1 1X4Z SER A 6 ? UNP Q6KAM5 ? ? 'cloning artifact' 6 6 1 1X4Z GLY A 7 ? UNP Q6KAM5 ? ? 'cloning artifact' 7 7 1 1X4Z SER A 116 ? UNP Q6KAM5 ? ? 'cloning artifact' 116 8 1 1X4Z GLY A 117 ? UNP Q6KAM5 ? ? 'cloning artifact' 117 9 1 1X4Z PRO A 118 ? UNP Q6KAM5 ? ? 'cloning artifact' 118 10 1 1X4Z SER A 119 ? UNP Q6KAM5 ? ? 'cloning artifact' 119 11 1 1X4Z SER A 120 ? UNP Q6KAM5 ? ? 'cloning artifact' 120 12 1 1X4Z GLY A 121 ? UNP Q6KAM5 ? ? 'cloning artifact' 121 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.43mM fn3 domain U-15N,13C; 20mM d-Tris-HCl; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 1X4Z _pdbx_nmr_refine.method 'torsion angle dynamics, restrainted molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1X4Z _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1X4Z _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 2.6 Bruker 1 processing NMRPipe 20030801 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9295 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 1X4Z _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1X4Z _struct.title ;Solution structure of the 2nd fibronectin type III domain from mouse biregional cell adhesion molecule-related/down-regulated oncogenes (Cdon) binding protein ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1X4Z _struct_keywords.pdbx_keywords 'CELL ADHESION' _struct_keywords.text ;fibronectin type III, fn3, immunoglobulin-like beta-sandwich fold, cell adhesion, structural genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 4 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 25 ? THR A 28 ? THR A 25 THR A 28 A 2 SER A 33 ? THR A 37 ? SER A 33 THR A 37 A 3 SER A 77 ? THR A 81 ? SER A 77 THR A 81 B 1 ILE A 65 ? ILE A 71 ? ILE A 65 ILE A 71 B 2 SER A 50 ? LYS A 57 ? SER A 50 LYS A 57 B 3 SER A 88 ? ASN A 97 ? SER A 88 ASN A 97 B 4 GLY A 100 ? GLU A 101 ? GLY A 100 GLU A 101 C 1 ILE A 65 ? ILE A 71 ? ILE A 65 ILE A 71 C 2 SER A 50 ? LYS A 57 ? SER A 50 LYS A 57 C 3 SER A 88 ? ASN A 97 ? SER A 88 ASN A 97 C 4 TYR A 111 ? VAL A 112 ? TYR A 111 VAL A 112 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 25 ? N THR A 25 O THR A 37 ? O THR A 37 A 2 3 N VAL A 36 ? N VAL A 36 O VAL A 78 ? O VAL A 78 B 1 2 O ILE A 65 ? O ILE A 65 N TYR A 55 ? N TYR A 55 B 2 3 N SER A 50 ? N SER A 50 O LEU A 96 ? O LEU A 96 B 3 4 N ASN A 97 ? N ASN A 97 O GLY A 100 ? O GLY A 100 C 1 2 O ILE A 65 ? O ILE A 65 N TYR A 55 ? N TYR A 55 C 2 3 N SER A 50 ? N SER A 50 O LEU A 96 ? O LEU A 96 C 3 4 N TYR A 89 ? N TYR A 89 O TYR A 111 ? O TYR A 111 # _database_PDB_matrix.entry_id 1X4Z _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1X4Z _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 GLN 9 9 9 GLN GLN A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 HIS 12 12 12 HIS HIS A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 PRO 17 17 17 PRO PRO A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 PRO 21 21 21 PRO PRO A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 ARG 23 23 23 ARG ARG A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 SER 27 27 27 SER SER A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 TYR 35 35 35 TYR TYR A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 THR 37 37 37 THR THR A . n A 1 38 TRP 38 38 38 TRP TRP A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 ASN 43 43 43 ASN ASN A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 PHE 46 46 46 PHE PHE A . n A 1 47 PRO 47 47 47 PRO PRO A . n A 1 48 ILE 48 48 48 ILE ILE A . n A 1 49 GLN 49 49 49 GLN GLN A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 PHE 51 51 51 PHE PHE A . n A 1 52 ARG 52 52 52 ARG ARG A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 TYR 55 55 55 TYR TYR A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 ASP 63 63 63 ASP ASP A . n A 1 64 TRP 64 64 64 TRP TRP A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 THR 68 68 68 THR THR A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 ILE 71 71 71 ILE ILE A . n A 1 72 PRO 72 72 72 PRO PRO A . n A 1 73 PRO 73 73 73 PRO PRO A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 ARG 75 75 75 ARG ARG A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 ILE 80 80 80 ILE ILE A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 ILE 87 87 87 ILE ILE A . n A 1 88 SER 88 88 88 SER SER A . n A 1 89 TYR 89 89 89 TYR TYR A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 PHE 91 91 91 PHE PHE A . n A 1 92 ARG 92 92 92 ARG ARG A . n A 1 93 VAL 93 93 93 VAL VAL A . n A 1 94 ARG 94 94 94 ARG ARG A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 ASN 97 97 97 ASN ASN A . n A 1 98 MET 98 98 98 MET MET A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 GLY 100 100 100 GLY GLY A . n A 1 101 GLU 101 101 101 GLU GLU A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 GLU 103 103 103 GLU GLU A . n A 1 104 PRO 104 104 104 PRO PRO A . n A 1 105 SER 105 105 105 SER SER A . n A 1 106 ALA 106 106 106 ALA ALA A . n A 1 107 PRO 107 107 107 PRO PRO A . n A 1 108 SER 108 108 108 SER SER A . n A 1 109 ARG 109 109 109 ARG ARG A . n A 1 110 PRO 110 110 110 PRO PRO A . n A 1 111 TYR 111 111 111 TYR TYR A . n A 1 112 VAL 112 112 112 VAL VAL A . n A 1 113 VAL 113 113 113 VAL VAL A . n A 1 114 SER 114 114 114 SER SER A . n A 1 115 GLY 115 115 115 GLY GLY A . n A 1 116 SER 116 116 116 SER SER A . n A 1 117 GLY 117 117 117 GLY GLY A . n A 1 118 PRO 118 118 118 PRO PRO A . n A 1 119 SER 119 119 119 SER SER A . n A 1 120 SER 120 120 120 SER SER A . n A 1 121 GLY 121 121 121 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-15 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 2 ? ? 38.10 42.27 2 1 SER A 6 ? ? 37.42 43.36 3 1 PRO A 10 ? ? -69.73 98.03 4 1 ARG A 14 ? ? -67.42 90.62 5 1 ASP A 22 ? ? -50.45 176.07 6 1 ASP A 63 ? ? -52.15 -179.83 7 1 ALA A 67 ? ? -87.92 -71.58 8 1 SER A 108 ? ? -51.31 171.55 9 1 SER A 116 ? ? -87.41 43.93 10 1 PRO A 118 ? ? -69.70 -168.24 11 2 PRO A 10 ? ? -69.65 96.68 12 2 ASP A 11 ? ? -174.71 -177.87 13 2 HIS A 12 ? ? -40.62 96.36 14 2 ARG A 14 ? ? -67.39 91.19 15 2 ASP A 22 ? ? -51.57 175.04 16 2 ARG A 41 ? ? -94.54 -69.33 17 2 LEU A 58 ? ? -78.67 -70.85 18 2 ALA A 67 ? ? -95.62 -69.86 19 2 PRO A 107 ? ? -69.66 94.29 20 2 SER A 108 ? ? -43.26 165.37 21 2 SER A 116 ? ? -96.23 50.56 22 2 PRO A 118 ? ? -69.73 94.78 23 2 SER A 119 ? ? -35.89 101.60 24 3 PRO A 10 ? ? -69.77 -170.82 25 3 ARG A 14 ? ? -66.71 79.43 26 3 ASP A 22 ? ? -49.78 174.01 27 3 ARG A 41 ? ? -107.39 -69.88 28 3 ASP A 63 ? ? -52.02 177.04 29 3 SER A 108 ? ? -47.27 170.31 30 3 PRO A 118 ? ? -69.74 2.05 31 3 SER A 119 ? ? -38.57 119.98 32 4 PRO A 10 ? ? -69.78 5.56 33 4 ARG A 14 ? ? -47.87 96.14 34 4 ASP A 22 ? ? -48.46 175.78 35 4 ARG A 41 ? ? -102.74 -69.48 36 4 ALA A 67 ? ? -91.51 -71.69 37 4 PRO A 107 ? ? -69.77 99.50 38 4 SER A 108 ? ? -44.80 162.80 39 4 SER A 114 ? ? -99.89 44.21 40 5 SER A 8 ? ? -44.77 95.89 41 5 PRO A 10 ? ? -69.76 -167.79 42 5 ASP A 11 ? ? -79.40 48.16 43 5 ASP A 22 ? ? -47.36 174.49 44 5 ALA A 70 ? ? 72.01 32.83 45 5 SER A 105 ? ? -48.21 152.18 46 5 SER A 108 ? ? -48.45 157.17 47 5 ARG A 109 ? ? -49.57 151.60 48 6 PRO A 10 ? ? -69.77 3.85 49 6 ASP A 22 ? ? -53.97 177.24 50 6 ARG A 41 ? ? -94.16 -67.76 51 6 LEU A 58 ? ? -91.73 -71.31 52 6 MET A 98 ? ? -69.48 1.45 53 6 SER A 105 ? ? -45.94 150.52 54 6 PRO A 107 ? ? -69.72 97.66 55 6 SER A 108 ? ? -43.53 154.46 56 6 PRO A 118 ? ? -69.92 3.96 57 7 GLN A 9 ? ? -39.66 154.65 58 7 PRO A 10 ? ? -69.75 3.94 59 7 ASP A 22 ? ? -49.39 174.52 60 7 ARG A 41 ? ? -103.58 -69.68 61 7 LEU A 58 ? ? -96.31 -65.46 62 7 ASP A 63 ? ? -59.88 -175.85 63 7 ALA A 67 ? ? -91.41 -71.33 64 7 MET A 98 ? ? -68.98 0.78 65 7 SER A 105 ? ? -47.95 158.88 66 7 PRO A 107 ? ? -69.68 96.89 67 7 SER A 108 ? ? -47.21 160.04 68 8 PRO A 10 ? ? -69.66 3.23 69 8 ARG A 14 ? ? -63.42 89.21 70 8 ASP A 22 ? ? -50.42 174.32 71 8 LYS A 59 ? ? -91.81 35.11 72 8 ASP A 63 ? ? -60.06 -175.18 73 8 SER A 108 ? ? -46.10 163.88 74 8 PRO A 118 ? ? -69.74 90.36 75 8 SER A 120 ? ? -133.09 -43.78 76 9 PRO A 10 ? ? -69.80 -175.17 77 9 ASP A 22 ? ? -51.27 174.77 78 9 ARG A 41 ? ? -93.00 -70.41 79 9 LEU A 58 ? ? -87.48 -70.71 80 9 LYS A 59 ? ? -34.72 -38.38 81 9 ALA A 67 ? ? -90.19 -69.00 82 9 SER A 105 ? ? -43.93 153.85 83 9 PRO A 107 ? ? -69.74 98.05 84 9 SER A 108 ? ? -45.80 151.24 85 9 ARG A 109 ? ? -45.57 156.18 86 9 SER A 114 ? ? -104.84 43.01 87 10 PRO A 10 ? ? -69.86 82.96 88 10 ASP A 22 ? ? -49.51 174.15 89 10 ARG A 41 ? ? -109.43 -69.14 90 10 LEU A 58 ? ? -90.37 -68.55 91 10 LYS A 59 ? ? -39.45 -31.28 92 10 ALA A 67 ? ? -94.16 -69.84 93 10 MET A 98 ? ? -68.72 0.65 94 10 SER A 105 ? ? -46.32 154.57 95 10 PRO A 107 ? ? -69.79 92.98 96 10 ARG A 109 ? ? -44.62 150.22 97 10 SER A 114 ? ? -91.62 -60.07 98 10 PRO A 118 ? ? -69.77 1.83 99 10 SER A 119 ? ? 74.51 51.32 100 11 HIS A 12 ? ? -35.86 152.73 101 11 ARG A 14 ? ? -57.10 95.73 102 11 ASP A 22 ? ? -52.44 175.39 103 11 ARG A 41 ? ? -100.32 -70.44 104 11 LYS A 59 ? ? -91.89 35.54 105 11 ASP A 63 ? ? -50.34 -179.42 106 11 MET A 98 ? ? -69.03 0.73 107 11 SER A 105 ? ? -44.31 151.95 108 11 PRO A 107 ? ? -69.79 97.11 109 11 SER A 108 ? ? -48.30 159.59 110 11 SER A 114 ? ? -114.67 50.01 111 12 HIS A 12 ? ? -65.21 99.53 112 12 ARG A 14 ? ? -48.00 91.09 113 12 ASP A 22 ? ? -50.00 177.95 114 12 ARG A 41 ? ? -103.31 -70.45 115 12 LEU A 58 ? ? -91.13 -61.85 116 12 LYS A 59 ? ? -37.40 -36.45 117 12 ASP A 63 ? ? -52.34 -176.45 118 12 ALA A 67 ? ? -92.52 -64.71 119 12 MET A 98 ? ? -69.84 1.56 120 12 PRO A 107 ? ? -69.75 98.06 121 12 SER A 108 ? ? -45.19 164.75 122 12 SER A 116 ? ? -36.52 136.94 123 12 PRO A 118 ? ? -69.66 -169.27 124 13 ASP A 22 ? ? -51.67 174.26 125 13 ARG A 41 ? ? -109.81 -70.34 126 13 LEU A 58 ? ? -105.56 -71.25 127 13 ASP A 63 ? ? -50.09 -178.67 128 13 MET A 98 ? ? -69.58 1.69 129 13 SER A 105 ? ? -41.70 150.33 130 13 PRO A 107 ? ? -69.76 88.81 131 13 SER A 108 ? ? -41.06 153.27 132 13 ARG A 109 ? ? -48.96 151.81 133 13 SER A 116 ? ? -35.02 123.33 134 14 SER A 6 ? ? -132.22 -55.70 135 14 ASP A 11 ? ? -41.59 100.68 136 14 ASP A 22 ? ? -46.88 174.59 137 14 ARG A 41 ? ? -111.54 -70.74 138 14 LYS A 59 ? ? -85.67 36.89 139 14 LYS A 60 ? ? -172.97 -177.67 140 14 ASP A 63 ? ? -79.38 -73.77 141 14 ALA A 67 ? ? -103.18 -68.35 142 14 MET A 98 ? ? -69.70 1.13 143 14 PRO A 107 ? ? -69.87 99.52 144 14 SER A 108 ? ? -47.80 170.37 145 15 ASP A 22 ? ? -48.03 174.24 146 15 ARG A 41 ? ? -110.88 -70.51 147 15 VAL A 61 ? ? -46.73 165.81 148 15 ASP A 63 ? ? -48.81 176.77 149 15 ALA A 70 ? ? 71.59 34.08 150 15 SER A 105 ? ? -44.54 157.57 151 15 SER A 108 ? ? -48.00 159.04 152 16 ASP A 22 ? ? -48.41 172.59 153 16 ARG A 41 ? ? -95.58 -70.15 154 16 LYS A 59 ? ? -92.39 48.52 155 16 SER A 69 ? ? -174.29 -178.03 156 16 SER A 105 ? ? -45.82 154.46 157 16 PRO A 107 ? ? -69.78 94.74 158 16 SER A 108 ? ? -42.14 158.79 159 16 SER A 116 ? ? -47.68 162.71 160 16 PRO A 118 ? ? -69.85 -164.56 161 17 ARG A 14 ? ? -59.55 84.95 162 17 ASP A 22 ? ? -51.63 176.62 163 17 ARG A 41 ? ? -103.89 -70.26 164 17 LYS A 59 ? ? -57.98 -71.54 165 17 VAL A 61 ? ? -32.35 107.90 166 17 ALA A 67 ? ? -103.31 -69.78 167 17 PRO A 107 ? ? -69.74 97.42 168 17 SER A 108 ? ? -45.75 167.49 169 18 SER A 2 ? ? -38.39 157.18 170 18 ASP A 22 ? ? -51.77 175.52 171 18 ASP A 63 ? ? -52.51 177.14 172 18 ALA A 67 ? ? -93.78 -66.90 173 18 ALA A 70 ? ? 71.49 36.13 174 18 SER A 105 ? ? -45.20 156.61 175 18 PRO A 107 ? ? -69.69 89.26 176 18 SER A 108 ? ? -40.70 152.28 177 18 ARG A 109 ? ? -44.75 153.57 178 19 GLN A 9 ? ? -39.86 144.16 179 19 HIS A 12 ? ? -36.19 115.78 180 19 ARG A 14 ? ? -61.52 87.36 181 19 ASP A 22 ? ? -52.53 172.50 182 19 ARG A 41 ? ? -102.17 -70.63 183 19 LEU A 58 ? ? -94.93 -60.67 184 19 ASP A 63 ? ? -62.43 -174.87 185 19 ALA A 67 ? ? -102.58 -70.27 186 19 ALA A 106 ? ? -32.67 141.70 187 19 PRO A 107 ? ? -69.85 97.69 188 19 ARG A 109 ? ? -46.75 151.89 189 19 PRO A 118 ? ? -69.79 91.21 190 20 ASP A 22 ? ? -51.50 176.76 191 20 ARG A 41 ? ? -104.78 -69.98 192 20 LEU A 58 ? ? -97.52 -61.09 193 20 ASP A 63 ? ? -66.51 -176.19 194 20 SER A 69 ? ? -174.42 -177.30 195 20 SER A 116 ? ? -37.03 115.52 196 20 SER A 120 ? ? -165.31 118.05 #