data_1X57 # _entry.id 1X57 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1X57 pdb_00001x57 10.2210/pdb1x57/pdb RCSB RCSB024393 ? ? WWPDB D_1000024393 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsi002010852.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1X57 _pdbx_database_status.recvd_initial_deposition_date 2005-05-15 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nameki, N.' 1 'Sato, M.' 2 'Tochio, N.' 3 'Koshiba, S.' 4 'Inoue, M.' 5 'Kigawa, T.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution structures of the HTH domain of human EDF-1 protein' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nameki, N.' 1 ? primary 'Sato, M.' 2 ? primary 'Tochio, N.' 3 ? primary 'Koshiba, S.' 4 ? primary 'Inoue, M.' 5 ? primary 'Kigawa, T.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Endothelial differentiation-related factor 1' _entity.formula_weight 9568.893 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'HTH domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'EDF-1, Multiprotein bridging factor 1, MBF1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKPIEK GPRAKSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKPIEK GPRAKSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsi002010852.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 ASP n 1 9 ARG n 1 10 VAL n 1 11 THR n 1 12 LEU n 1 13 GLU n 1 14 VAL n 1 15 GLY n 1 16 LYS n 1 17 VAL n 1 18 ILE n 1 19 GLN n 1 20 GLN n 1 21 GLY n 1 22 ARG n 1 23 GLN n 1 24 SER n 1 25 LYS n 1 26 GLY n 1 27 LEU n 1 28 THR n 1 29 GLN n 1 30 LYS n 1 31 ASP n 1 32 LEU n 1 33 ALA n 1 34 THR n 1 35 LYS n 1 36 ILE n 1 37 ASN n 1 38 GLU n 1 39 LYS n 1 40 PRO n 1 41 GLN n 1 42 VAL n 1 43 ILE n 1 44 ALA n 1 45 ASP n 1 46 TYR n 1 47 GLU n 1 48 SER n 1 49 GLY n 1 50 ARG n 1 51 ALA n 1 52 ILE n 1 53 PRO n 1 54 ASN n 1 55 ASN n 1 56 GLN n 1 57 VAL n 1 58 LEU n 1 59 GLY n 1 60 LYS n 1 61 ILE n 1 62 GLU n 1 63 ARG n 1 64 ALA n 1 65 ILE n 1 66 GLY n 1 67 LEU n 1 68 LYS n 1 69 LEU n 1 70 ARG n 1 71 GLY n 1 72 LYS n 1 73 ASP n 1 74 ILE n 1 75 GLY n 1 76 LYS n 1 77 PRO n 1 78 ILE n 1 79 GLU n 1 80 LYS n 1 81 GLY n 1 82 PRO n 1 83 ARG n 1 84 ALA n 1 85 LYS n 1 86 SER n 1 87 GLY n 1 88 PRO n 1 89 SER n 1 90 SER n 1 91 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene EDF-1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P041012-15 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code EDF1_HUMAN _struct_ref.pdbx_db_accession O60869 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code DRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKPIEKGPRAK _struct_ref.pdbx_align_begin 71 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1X57 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 85 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O60869 _struct_ref_seq.db_align_beg 71 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 148 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 85 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1X57 GLY A 1 ? UNP O60869 ? ? 'cloning artifact' 1 1 1 1X57 SER A 2 ? UNP O60869 ? ? 'cloning artifact' 2 2 1 1X57 SER A 3 ? UNP O60869 ? ? 'cloning artifact' 3 3 1 1X57 GLY A 4 ? UNP O60869 ? ? 'cloning artifact' 4 4 1 1X57 SER A 5 ? UNP O60869 ? ? 'cloning artifact' 5 5 1 1X57 SER A 6 ? UNP O60869 ? ? 'cloning artifact' 6 6 1 1X57 GLY A 7 ? UNP O60869 ? ? 'cloning artifact' 7 7 1 1X57 SER A 86 ? UNP O60869 ? ? 'cloning artifact' 86 8 1 1X57 GLY A 87 ? UNP O60869 ? ? 'cloning artifact' 87 9 1 1X57 PRO A 88 ? UNP O60869 ? ? 'cloning artifact' 88 10 1 1X57 SER A 89 ? UNP O60869 ? ? 'cloning artifact' 89 11 1 1X57 SER A 90 ? UNP O60869 ? ? 'cloning artifact' 90 12 1 1X57 GLY A 91 ? UNP O60869 ? ? 'cloning artifact' 91 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.5mM HTH domain U-15N,13C; 20mM d-Tris-HCl(pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 900 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 1X57 _pdbx_nmr_refine.method 'torsion angle dynamics, restrained molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1X57 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function,structures with the lowest energy,structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1X57 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9295 'Kobayashi, N.' 4 'structure solution' CYANA 1.0.7 'Guntert, P.' 5 refinement OPALp 1.2 'Koradi, R.,Billeter, M.,Guntert, P.' 6 # _exptl.entry_id 1X57 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1X57 _struct.title 'Solution structures of the HTH domain of human EDF-1 protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1X57 _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' _struct_keywords.text ;EDF1, HMBF1alpha, helix-turn-helix, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, DNA BINDING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 12 ? SER A 24 ? LEU A 12 SER A 24 1 ? 13 HELX_P HELX_P2 2 THR A 28 ? ASN A 37 ? THR A 28 ASN A 37 1 ? 10 HELX_P HELX_P3 3 LYS A 39 ? GLY A 49 ? LYS A 39 GLY A 49 1 ? 11 HELX_P HELX_P4 4 ASN A 54 ? GLY A 66 ? ASN A 54 GLY A 66 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 1X57 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1X57 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 ASP 8 8 8 ASP ASP A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 THR 11 11 11 THR THR A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 GLN 19 19 19 GLN GLN A . n A 1 20 GLN 20 20 20 GLN GLN A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 GLN 23 23 23 GLN GLN A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 GLN 29 29 29 GLN GLN A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 ASP 31 31 31 ASP ASP A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 THR 34 34 34 THR THR A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 ILE 36 36 36 ILE ILE A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 VAL 42 42 42 VAL VAL A . n A 1 43 ILE 43 43 43 ILE ILE A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 ASP 45 45 45 ASP ASP A . n A 1 46 TYR 46 46 46 TYR TYR A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 SER 48 48 48 SER SER A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ARG 50 50 50 ARG ARG A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 PRO 53 53 53 PRO PRO A . n A 1 54 ASN 54 54 54 ASN ASN A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 GLN 56 56 56 GLN GLN A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 GLY 59 59 59 GLY GLY A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 ARG 63 63 63 ARG ARG A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 ARG 70 70 70 ARG ARG A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 LYS 72 72 72 LYS LYS A . n A 1 73 ASP 73 73 73 ASP ASP A . n A 1 74 ILE 74 74 74 ILE ILE A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 PRO 77 77 77 PRO PRO A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 LYS 80 80 80 LYS LYS A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 PRO 82 82 82 PRO PRO A . n A 1 83 ARG 83 83 83 ARG ARG A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 SER 86 86 86 SER SER A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 PRO 88 88 88 PRO PRO A . n A 1 89 SER 89 89 89 SER SER A . n A 1 90 SER 90 90 90 SER SER A . n A 1 91 GLY 91 91 91 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-15 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 14 _pdbx_validate_close_contact.auth_atom_id_1 HG1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 THR _pdbx_validate_close_contact.auth_seq_id_1 28 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OD1 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 ASP _pdbx_validate_close_contact.auth_seq_id_2 31 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.56 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 6 CB A ASP 45 ? ? CG A ASP 45 ? ? OD1 A ASP 45 ? ? 111.05 118.30 -7.25 0.90 N 2 14 CD A ARG 70 ? ? NE A ARG 70 ? ? CZ A ARG 70 ? ? 133.71 123.60 10.11 1.40 N 3 14 NE A ARG 70 ? ? CZ A ARG 70 ? ? NH1 A ARG 70 ? ? 124.92 120.30 4.62 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 5 ? ? 76.60 72.68 2 1 ASP A 8 ? ? 50.28 93.12 3 1 GLU A 79 ? ? 70.48 -72.15 4 1 SER A 89 ? ? -123.91 -165.14 5 2 SER A 2 ? ? -135.67 -52.34 6 2 SER A 5 ? ? 76.87 -12.77 7 2 ASN A 37 ? ? 55.12 6.78 8 2 GLU A 79 ? ? 44.36 80.17 9 2 LYS A 80 ? ? -62.93 84.56 10 2 ARG A 83 ? ? 37.59 53.37 11 2 SER A 86 ? ? -146.90 -63.72 12 2 SER A 90 ? ? 52.48 -179.08 13 3 ASN A 37 ? ? 44.92 71.50 14 3 GLU A 79 ? ? 49.12 23.16 15 3 LYS A 80 ? ? -22.82 85.46 16 3 PRO A 82 ? ? -62.02 95.06 17 3 ALA A 84 ? ? 41.01 75.55 18 3 LYS A 85 ? ? -152.21 -46.89 19 3 SER A 86 ? ? 48.00 72.51 20 3 SER A 89 ? ? -136.45 -69.75 21 3 SER A 90 ? ? -154.68 -67.61 22 4 SER A 3 ? ? -135.60 -53.10 23 4 SER A 6 ? ? 48.06 -160.53 24 4 ASN A 37 ? ? 37.09 68.85 25 4 ASP A 73 ? ? -64.93 8.23 26 4 GLU A 79 ? ? 61.59 -171.15 27 5 SER A 5 ? ? 60.25 -67.56 28 5 SER A 6 ? ? 55.21 177.00 29 5 ASN A 37 ? ? 45.02 74.21 30 5 ASP A 73 ? ? -66.62 11.69 31 5 GLU A 79 ? ? 63.50 -77.27 32 5 LYS A 80 ? ? -65.58 94.04 33 5 SER A 89 ? ? 36.67 79.96 34 6 SER A 2 ? ? 57.13 -172.07 35 6 SER A 5 ? ? -161.81 84.24 36 6 ASP A 8 ? ? -166.71 111.74 37 6 ASN A 37 ? ? 42.27 76.31 38 6 LYS A 85 ? ? 71.03 -35.86 39 6 SER A 86 ? ? -66.12 -177.66 40 7 SER A 2 ? ? 53.32 75.60 41 7 SER A 6 ? ? -148.67 -4.78 42 7 LEU A 12 ? ? 62.06 155.12 43 7 LYS A 85 ? ? 53.12 -160.07 44 7 SER A 86 ? ? -153.77 -66.08 45 7 SER A 89 ? ? 176.53 164.04 46 8 SER A 3 ? ? 52.55 166.84 47 8 SER A 6 ? ? -153.74 48.82 48 8 ARG A 9 ? ? 59.20 162.60 49 8 ARG A 83 ? ? 95.08 121.63 50 8 ALA A 84 ? ? -144.60 -61.49 51 8 LYS A 85 ? ? 61.26 163.21 52 8 SER A 86 ? ? 30.80 77.29 53 9 SER A 2 ? ? -145.95 -37.85 54 9 SER A 3 ? ? 33.96 49.38 55 9 SER A 5 ? ? -162.87 74.88 56 9 LEU A 12 ? ? 66.30 -177.12 57 9 ASN A 37 ? ? 36.74 72.15 58 9 LYS A 80 ? ? -116.65 66.95 59 9 SER A 90 ? ? 63.44 170.20 60 10 SER A 5 ? ? -156.20 26.56 61 10 ASP A 73 ? ? -69.91 16.73 62 10 GLU A 79 ? ? 59.43 -178.33 63 10 ARG A 83 ? ? -152.45 -48.91 64 10 ALA A 84 ? ? 53.39 -176.46 65 10 LYS A 85 ? ? 29.10 83.55 66 11 SER A 2 ? ? -144.48 -64.09 67 11 SER A 3 ? ? 51.99 -165.48 68 11 LEU A 12 ? ? 64.94 172.18 69 11 ASP A 73 ? ? -73.52 21.33 70 11 ARG A 83 ? ? -163.30 88.51 71 11 SER A 90 ? ? -148.15 20.70 72 12 SER A 2 ? ? 64.06 -66.79 73 12 SER A 5 ? ? 52.80 94.01 74 12 ASP A 8 ? ? -81.66 48.44 75 12 ASP A 73 ? ? -67.53 6.94 76 12 GLU A 79 ? ? 23.83 58.97 77 12 ARG A 83 ? ? 47.43 -119.03 78 12 ALA A 84 ? ? 21.30 76.76 79 12 SER A 89 ? ? -156.39 -66.68 80 13 SER A 2 ? ? 93.78 53.72 81 13 ARG A 9 ? ? 56.76 -172.29 82 13 GLU A 79 ? ? 25.02 61.25 83 13 LYS A 80 ? ? -171.00 -30.48 84 14 SER A 5 ? ? -159.26 -40.42 85 14 SER A 6 ? ? 38.05 75.26 86 14 ASN A 37 ? ? 57.53 13.14 87 14 GLU A 79 ? ? 35.42 68.86 88 14 ARG A 83 ? ? -153.11 6.03 89 14 ALA A 84 ? ? -171.66 -177.76 90 14 SER A 86 ? ? 61.37 178.69 91 14 SER A 89 ? ? 57.74 166.89 92 14 SER A 90 ? ? -162.24 -25.72 93 16 SER A 2 ? ? -164.97 -37.75 94 16 SER A 3 ? ? -152.78 -26.17 95 16 GLU A 79 ? ? 38.32 -23.78 96 16 ARG A 83 ? ? -162.82 29.75 97 16 SER A 86 ? ? 176.20 155.76 98 17 SER A 2 ? ? 52.21 169.58 99 17 SER A 5 ? ? -135.86 -51.25 100 17 ASP A 8 ? ? 81.38 136.80 101 17 VAL A 10 ? ? 55.40 -153.68 102 17 THR A 11 ? ? 52.57 -157.02 103 17 LEU A 12 ? ? 74.52 157.98 104 17 GLU A 13 ? ? -98.21 -61.99 105 17 GLU A 79 ? ? 37.26 72.38 106 18 ASP A 8 ? ? -147.17 -53.30 107 18 ARG A 9 ? ? 58.04 154.50 108 18 THR A 11 ? ? -57.67 103.07 109 18 ASP A 73 ? ? -69.44 9.31 110 18 GLU A 79 ? ? 31.19 59.32 111 18 ARG A 83 ? ? 61.15 83.22 112 18 SER A 89 ? ? -114.01 -71.72 113 19 SER A 5 ? ? 67.17 -52.81 114 19 SER A 6 ? ? 50.41 15.84 115 19 ASP A 8 ? ? 61.61 159.38 116 19 GLU A 79 ? ? 58.62 104.81 117 19 LYS A 80 ? ? 70.53 -167.85 118 19 PRO A 88 ? ? -82.26 48.99 119 20 ARG A 9 ? ? 56.74 -165.45 120 20 GLU A 79 ? ? 67.04 161.29 121 20 ALA A 84 ? ? 8.39 92.47 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 9 ARG A 83 ? ? ALA A 84 ? ? 149.33 2 11 SER A 90 ? ? GLY A 91 ? ? -129.52 3 13 SER A 89 ? ? SER A 90 ? ? 149.62 4 16 SER A 90 ? ? GLY A 91 ? ? 149.88 5 17 GLY A 1 ? ? SER A 2 ? ? -133.64 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 3 TYR A 46 ? ? 0.070 'SIDE CHAIN' 2 7 ARG A 50 ? ? 0.115 'SIDE CHAIN' 3 9 ARG A 70 ? ? 0.083 'SIDE CHAIN' 4 20 ARG A 50 ? ? 0.079 'SIDE CHAIN' #