data_1X58 # _entry.id 1X58 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1X58 pdb_00001x58 10.2210/pdb1x58/pdb RCSB RCSB024394 ? ? WWPDB D_1000024394 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id mmt008001488.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1X58 _pdbx_database_status.recvd_initial_deposition_date 2005-05-15 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nameki, N.' 1 'Tomizawa, T.' 2 'Koshiba, S.' 3 'Inoue, M.' 4 'Kigawa, T.' 5 'Yokoyama, S.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title 'Solution structures of the myb-like DNA binding domain of 4930532D21Rik protein' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nameki, N.' 1 ? primary 'Tomizawa, T.' 2 ? primary 'Koshiba, S.' 3 ? primary 'Inoue, M.' 4 ? primary 'Kigawa, T.' 5 ? primary 'Yokoyama, S.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Hypothetical protein 4930532D21Rik' _entity.formula_weight 6977.819 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'Myb-like DNA binding domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'hypothetical protein LOC320022' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSSGSSGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGPSSG _entity_poly.pdbx_seq_one_letter_code_can GSSGSSGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGPSSG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier mmt008001488.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 ARG n 1 9 LYS n 1 10 ASP n 1 11 PHE n 1 12 THR n 1 13 LYS n 1 14 GLU n 1 15 GLU n 1 16 VAL n 1 17 ASN n 1 18 TYR n 1 19 LEU n 1 20 PHE n 1 21 HIS n 1 22 GLY n 1 23 VAL n 1 24 LYS n 1 25 THR n 1 26 MET n 1 27 GLY n 1 28 ASN n 1 29 HIS n 1 30 TRP n 1 31 ASN n 1 32 SER n 1 33 ILE n 1 34 LEU n 1 35 TRP n 1 36 SER n 1 37 PHE n 1 38 PRO n 1 39 PHE n 1 40 GLN n 1 41 LYS n 1 42 GLY n 1 43 ARG n 1 44 ARG n 1 45 ALA n 1 46 VAL n 1 47 ASP n 1 48 LEU n 1 49 ALA n 1 50 HIS n 1 51 LYS n 1 52 TYR n 1 53 HIS n 1 54 ARG n 1 55 LEU n 1 56 ILE n 1 57 SER n 1 58 GLY n 1 59 PRO n 1 60 SER n 1 61 SER n 1 62 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene 4930532D21Rik _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P040727-09 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8C0V1_MOUSE _struct_ref.pdbx_db_accession Q8C0V1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLI _struct_ref.pdbx_align_begin 712 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1X58 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 56 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8C0V1 _struct_ref_seq.db_align_beg 712 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 760 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 56 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1X58 GLY A 1 ? UNP Q8C0V1 ? ? 'cloning artifact' 1 1 1 1X58 SER A 2 ? UNP Q8C0V1 ? ? 'cloning artifact' 2 2 1 1X58 SER A 3 ? UNP Q8C0V1 ? ? 'cloning artifact' 3 3 1 1X58 GLY A 4 ? UNP Q8C0V1 ? ? 'cloning artifact' 4 4 1 1X58 SER A 5 ? UNP Q8C0V1 ? ? 'cloning artifact' 5 5 1 1X58 SER A 6 ? UNP Q8C0V1 ? ? 'cloning artifact' 6 6 1 1X58 GLY A 7 ? UNP Q8C0V1 ? ? 'cloning artifact' 7 7 1 1X58 SER A 57 ? UNP Q8C0V1 ? ? 'cloning artifact' 57 8 1 1X58 GLY A 58 ? UNP Q8C0V1 ? ? 'cloning artifact' 58 9 1 1X58 PRO A 59 ? UNP Q8C0V1 ? ? 'cloning artifact' 59 10 1 1X58 SER A 60 ? UNP Q8C0V1 ? ? 'cloning artifact' 60 11 1 1X58 SER A 61 ? UNP Q8C0V1 ? ? 'cloning artifact' 61 12 1 1X58 GLY A 62 ? UNP Q8C0V1 ? ? 'cloning artifact' 62 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.89mM myb-like DNA binding domain U-15N,13C; 20mM d-Tris-HCl(pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 1X58 _pdbx_nmr_refine.method 'torsion angle dynamics, restrained molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1X58 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function,structures with the lowest energy,structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1X58 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9295 'Kobayashi, N.' 4 'structure solution' CYANA 1.0.7 'Guntert, P.' 5 refinement OPALp 1.2 'Koradi, R.,Billeter, M.,Guntert, P.' 6 # _exptl.entry_id 1X58 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1X58 _struct.title 'Solution structures of the myb-like DNA binding domain of 4930532D21Rik protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1X58 _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;Mus musculus adult male testis cDNA, RIKEN full-length enriched library, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, UNKNOWN FUNCTION ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 12 ? GLY A 27 ? THR A 12 GLY A 27 1 ? 16 HELX_P HELX_P2 2 HIS A 29 ? PHE A 37 ? HIS A 29 PHE A 37 1 ? 9 HELX_P HELX_P3 3 ARG A 44 ? SER A 57 ? ARG A 44 SER A 57 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 1X58 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1X58 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 PHE 11 11 11 PHE PHE A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 ASN 17 17 17 ASN ASN A . n A 1 18 TYR 18 18 18 TYR TYR A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 PHE 20 20 20 PHE PHE A . n A 1 21 HIS 21 21 21 HIS HIS A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 MET 26 26 26 MET MET A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ASN 28 28 28 ASN ASN A . n A 1 29 HIS 29 29 29 HIS HIS A . n A 1 30 TRP 30 30 30 TRP TRP A . n A 1 31 ASN 31 31 31 ASN ASN A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 TRP 35 35 35 TRP TRP A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 PHE 37 37 37 PHE PHE A . n A 1 38 PRO 38 38 38 PRO PRO A . n A 1 39 PHE 39 39 39 PHE PHE A . n A 1 40 GLN 40 40 40 GLN GLN A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 ARG 43 43 43 ARG ARG A . n A 1 44 ARG 44 44 44 ARG ARG A . n A 1 45 ALA 45 45 45 ALA ALA A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 HIS 50 50 50 HIS HIS A . n A 1 51 LYS 51 51 51 LYS LYS A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 HIS 53 53 53 HIS HIS A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 PRO 59 59 59 PRO PRO A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 GLY 62 62 62 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-15 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 13 HG1 A THR 12 ? ? OE2 A GLU 15 ? ? 1.56 2 20 HG1 A THR 12 ? ? OE1 A GLU 14 ? ? 1.57 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 2 ? ? -164.29 104.73 2 1 SER A 5 ? ? -157.66 23.00 3 1 LYS A 9 ? ? -51.72 92.40 4 1 SER A 60 ? ? 55.20 174.60 5 1 SER A 61 ? ? 48.28 74.97 6 2 ARG A 8 ? ? -157.51 -49.41 7 2 ASP A 10 ? ? 47.13 -152.72 8 2 SER A 36 ? ? -59.92 -71.60 9 2 SER A 57 ? ? 32.60 79.65 10 2 SER A 61 ? ? 55.83 178.05 11 3 SER A 2 ? ? -172.16 -147.77 12 3 SER A 6 ? ? 59.57 156.69 13 3 ARG A 8 ? ? -133.22 -62.53 14 3 LYS A 9 ? ? -137.48 -78.55 15 3 PHE A 11 ? ? 54.68 94.75 16 3 ASN A 28 ? ? -72.00 21.54 17 3 SER A 57 ? ? 68.93 -77.41 18 3 SER A 61 ? ? 65.01 85.09 19 4 SER A 2 ? ? 38.98 94.34 20 4 SER A 3 ? ? 64.29 84.22 21 4 ARG A 8 ? ? -132.33 -45.33 22 4 ASP A 10 ? ? 65.72 104.75 23 4 PHE A 11 ? ? 67.62 88.79 24 4 SER A 60 ? ? 27.66 73.07 25 5 ARG A 8 ? ? 73.53 156.36 26 5 LYS A 9 ? ? 45.18 84.48 27 5 ASP A 10 ? ? 59.28 103.08 28 5 PHE A 11 ? ? 104.93 132.87 29 5 SER A 57 ? ? -104.83 72.47 30 5 SER A 61 ? ? -154.50 77.88 31 6 SER A 3 ? ? 49.79 -97.26 32 6 SER A 5 ? ? 27.62 82.11 33 6 LYS A 9 ? ? -138.83 -70.04 34 6 ASP A 10 ? ? -144.18 -79.83 35 6 SER A 60 ? ? 85.62 99.12 36 6 SER A 61 ? ? 58.92 19.98 37 7 SER A 5 ? ? -58.34 105.96 38 7 ASP A 10 ? ? 130.96 -40.00 39 7 SER A 60 ? ? -144.82 18.27 40 8 SER A 2 ? ? 59.02 -33.34 41 8 LYS A 9 ? ? 56.76 -92.75 42 8 PHE A 11 ? ? 70.64 122.07 43 8 THR A 25 ? ? -95.75 -61.73 44 8 ASN A 28 ? ? -69.51 9.17 45 8 SER A 57 ? ? -111.65 66.36 46 9 LYS A 9 ? ? -70.65 -166.57 47 9 ASP A 10 ? ? 56.89 -101.89 48 10 SER A 2 ? ? 56.01 84.72 49 10 SER A 3 ? ? 58.14 -154.98 50 10 SER A 5 ? ? 119.17 139.29 51 10 LYS A 9 ? ? -141.86 17.39 52 10 PHE A 11 ? ? 97.17 123.25 53 10 MET A 26 ? ? -128.86 -93.82 54 10 HIS A 29 ? ? -69.94 98.67 55 10 SER A 61 ? ? 75.06 -43.80 56 11 SER A 2 ? ? -150.41 -22.42 57 11 LYS A 9 ? ? 60.70 -41.90 58 11 ASN A 28 ? ? -68.93 24.32 59 11 SER A 61 ? ? -155.00 -61.16 60 12 SER A 2 ? ? 63.15 96.25 61 12 SER A 3 ? ? 58.09 -161.52 62 12 ARG A 8 ? ? -134.17 -67.41 63 12 LYS A 9 ? ? -147.41 -50.55 64 12 PHE A 11 ? ? 70.09 115.26 65 12 ASN A 28 ? ? -72.96 38.49 66 13 LYS A 9 ? ? 128.27 -163.86 67 13 PHE A 11 ? ? 68.15 111.55 68 13 GLN A 40 ? ? 37.36 -124.94 69 13 SER A 61 ? ? 52.07 -83.21 70 14 ARG A 8 ? ? -76.37 -72.56 71 14 SER A 57 ? ? -162.45 83.54 72 14 PRO A 59 ? ? -81.41 44.35 73 15 ARG A 8 ? ? 61.68 -43.08 74 15 GLN A 40 ? ? 31.09 -141.46 75 15 SER A 61 ? ? -145.07 10.55 76 16 SER A 2 ? ? 62.06 73.20 77 16 SER A 5 ? ? 40.42 72.81 78 16 ARG A 8 ? ? -146.84 -87.27 79 16 ASN A 28 ? ? -61.97 15.15 80 16 PRO A 59 ? ? -66.78 99.73 81 16 SER A 60 ? ? -179.17 108.20 82 17 SER A 6 ? ? -148.56 -33.05 83 17 LYS A 9 ? ? 54.16 -169.16 84 17 ASP A 10 ? ? 47.29 -155.77 85 17 MET A 26 ? ? -86.29 -105.22 86 18 SER A 3 ? ? -138.67 -85.13 87 18 SER A 6 ? ? 55.57 -164.57 88 18 ASP A 10 ? ? 56.40 162.69 89 18 PHE A 11 ? ? 62.39 144.57 90 18 ASN A 28 ? ? -78.89 23.47 91 18 SER A 57 ? ? -160.22 118.44 92 18 PRO A 59 ? ? -69.13 71.54 93 18 SER A 60 ? ? -143.21 16.39 94 19 SER A 2 ? ? -153.74 85.96 95 19 ARG A 8 ? ? -133.21 -36.38 96 19 ASP A 10 ? ? 64.95 -53.45 97 19 ASN A 28 ? ? -83.44 33.07 98 19 SER A 61 ? ? 62.36 -170.57 99 20 SER A 5 ? ? 55.50 -2.89 100 20 SER A 6 ? ? -68.68 -85.60 101 20 ASP A 10 ? ? -152.31 49.47 102 20 SER A 60 ? ? 49.53 -137.29 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 2 LYS A 9 ? ? ASP A 10 ? ? -141.72 2 3 GLY A 7 ? ? ARG A 8 ? ? 148.96 3 15 GLN A 40 ? ? LYS A 41 ? ? 144.55 4 18 MET A 26 ? ? GLY A 27 ? ? -146.42 5 19 SER A 61 ? ? GLY A 62 ? ? 145.58 6 20 SER A 60 ? ? SER A 61 ? ? 145.29 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 2 ARG A 43 ? ? 0.089 'SIDE CHAIN' 2 3 ARG A 43 ? ? 0.091 'SIDE CHAIN' 3 4 ARG A 44 ? ? 0.130 'SIDE CHAIN' 4 10 ARG A 8 ? ? 0.075 'SIDE CHAIN' 5 10 ARG A 43 ? ? 0.080 'SIDE CHAIN' 6 14 ARG A 54 ? ? 0.145 'SIDE CHAIN' 7 15 ARG A 44 ? ? 0.074 'SIDE CHAIN' 8 20 TYR A 18 ? ? 0.082 'SIDE CHAIN' 9 20 ARG A 44 ? ? 0.096 'SIDE CHAIN' 10 20 ARG A 54 ? ? 0.103 'SIDE CHAIN' #