data_1X59 # _entry.id 1X59 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1X59 pdb_00001x59 10.2210/pdb1x59/pdb RCSB RCSB024395 ? ? WWPDB D_1000024395 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsi002013898.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1X59 _pdbx_database_status.recvd_initial_deposition_date 2005-05-15 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nameki, N.' 1 'Sasagawa, A.' 2 'Tomizawa, T.' 3 'Koshiba, S.' 4 'Inoue, M.' 5 'Kigawa, T.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution structures of the WHEP-TRS domain of human histidyl-tRNA synthetase' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nameki, N.' 1 ? primary 'Sasagawa, A.' 2 ? primary 'Tomizawa, T.' 3 ? primary 'Koshiba, S.' 4 ? primary 'Inoue, M.' 5 ? primary 'Kigawa, T.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Histidyl-tRNA synthetase' _entity.formula_weight 7748.883 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 6.1.1.21 _entity.pdbx_mutation ? _entity.pdbx_fragment 'WHEP-TRS domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Histidine--tRNA ligase, HisRS' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSSGSSGMAERAALEELVKLQGERVRGLKQQKASAELIEEEVAKLLKLKAQLGPDESKQKFVLKTPKSGPSSG _entity_poly.pdbx_seq_one_letter_code_can GSSGSSGMAERAALEELVKLQGERVRGLKQQKASAELIEEEVAKLLKLKAQLGPDESKQKFVLKTPKSGPSSG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsi002013898.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 MET n 1 9 ALA n 1 10 GLU n 1 11 ARG n 1 12 ALA n 1 13 ALA n 1 14 LEU n 1 15 GLU n 1 16 GLU n 1 17 LEU n 1 18 VAL n 1 19 LYS n 1 20 LEU n 1 21 GLN n 1 22 GLY n 1 23 GLU n 1 24 ARG n 1 25 VAL n 1 26 ARG n 1 27 GLY n 1 28 LEU n 1 29 LYS n 1 30 GLN n 1 31 GLN n 1 32 LYS n 1 33 ALA n 1 34 SER n 1 35 ALA n 1 36 GLU n 1 37 LEU n 1 38 ILE n 1 39 GLU n 1 40 GLU n 1 41 GLU n 1 42 VAL n 1 43 ALA n 1 44 LYS n 1 45 LEU n 1 46 LEU n 1 47 LYS n 1 48 LEU n 1 49 LYS n 1 50 ALA n 1 51 GLN n 1 52 LEU n 1 53 GLY n 1 54 PRO n 1 55 ASP n 1 56 GLU n 1 57 SER n 1 58 LYS n 1 59 GLN n 1 60 LYS n 1 61 PHE n 1 62 VAL n 1 63 LEU n 1 64 LYS n 1 65 THR n 1 66 PRO n 1 67 LYS n 1 68 SER n 1 69 GLY n 1 70 PRO n 1 71 SER n 1 72 SER n 1 73 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene HARS _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P041108-12 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SYH_HUMAN _struct_ref.pdbx_db_accession P12081 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MAERAALEELVKLQGERVRGLKQQKASAELIEEEVAKLLKLKAQLGPDESKQKFVLKTPK _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1X59 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 67 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P12081 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 60 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 67 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1X59 GLY A 1 ? UNP P12081 ? ? 'cloning artifact' 1 1 1 1X59 SER A 2 ? UNP P12081 ? ? 'cloning artifact' 2 2 1 1X59 SER A 3 ? UNP P12081 ? ? 'cloning artifact' 3 3 1 1X59 GLY A 4 ? UNP P12081 ? ? 'cloning artifact' 4 4 1 1X59 SER A 5 ? UNP P12081 ? ? 'cloning artifact' 5 5 1 1X59 SER A 6 ? UNP P12081 ? ? 'cloning artifact' 6 6 1 1X59 GLY A 7 ? UNP P12081 ? ? 'cloning artifact' 7 7 1 1X59 SER A 68 ? UNP P12081 ? ? 'cloning artifact' 68 8 1 1X59 GLY A 69 ? UNP P12081 ? ? 'cloning artifact' 69 9 1 1X59 PRO A 70 ? UNP P12081 ? ? 'cloning artifact' 70 10 1 1X59 SER A 71 ? UNP P12081 ? ? 'cloning artifact' 71 11 1 1X59 SER A 72 ? UNP P12081 ? ? 'cloning artifact' 72 12 1 1X59 GLY A 73 ? UNP P12081 ? ? 'cloning artifact' 73 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.85mM whep-trs domain U-15N,13C; 20mM d-Tris-HCl(pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 1X59 _pdbx_nmr_refine.method 'torsion angle dynamics, restrained molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1X59 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function,structures with the lowest energy,structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1X59 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 2.6 Bruker 1 processing NMRPipe 20030801 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9295 'Kobayashi, N.' 4 'structure solution' CYANA 1.0.7 'Guntert, P.' 5 refinement OPALp 1.2 'Koradi, R.,Billeter, M.,Guntert, P.' 6 # _exptl.entry_id 1X59 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1X59 _struct.title 'Solution structures of the WHEP-TRS domain of human histidyl-tRNA synthetase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1X59 _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text ;HisRS, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, PROTEIN BINDING ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 7 ? GLN A 31 ? GLY A 7 GLN A 31 1 ? 25 HELX_P HELX_P2 2 SER A 34 ? GLY A 53 ? SER A 34 GLY A 53 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 1X59 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1X59 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 MET 8 8 8 MET MET A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 LYS 19 19 19 LYS LYS A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 GLN 21 21 21 GLN GLN A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 GLN 30 30 30 GLN GLN A . n A 1 31 GLN 31 31 31 GLN GLN A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 GLU 41 41 41 GLU GLU A . n A 1 42 VAL 42 42 42 VAL VAL A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 GLN 51 51 51 GLN GLN A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 PRO 54 54 54 PRO PRO A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 GLN 59 59 59 GLN GLN A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 PHE 61 61 61 PHE PHE A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 THR 65 65 65 THR THR A . n A 1 66 PRO 66 66 66 PRO PRO A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 SER 68 68 68 SER SER A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 PRO 70 70 70 PRO PRO A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 GLY 73 73 73 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-15 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 58 ? ? 63.61 154.71 2 1 LYS A 60 ? ? -144.16 -69.03 3 1 SER A 71 ? ? -85.27 -152.74 4 2 ASP A 55 ? ? 46.66 -69.00 5 2 PHE A 61 ? ? -143.88 -11.30 6 2 LYS A 64 ? ? -68.54 5.57 7 2 SER A 68 ? ? -19.90 95.20 8 2 SER A 71 ? ? -154.84 -50.76 9 3 SER A 2 ? ? -153.62 58.55 10 3 SER A 5 ? ? 35.68 58.06 11 3 GLN A 59 ? ? 53.92 -168.10 12 3 PRO A 70 ? ? -73.16 21.08 13 4 SER A 2 ? ? 62.86 174.30 14 4 PRO A 54 ? ? -69.94 -170.90 15 4 GLU A 56 ? ? 65.24 140.56 16 4 SER A 57 ? ? 34.13 59.89 17 4 LYS A 58 ? ? -38.20 117.10 18 4 VAL A 62 ? ? -146.79 58.81 19 4 LEU A 63 ? ? 57.62 -175.95 20 5 SER A 3 ? ? -67.74 -76.39 21 5 SER A 5 ? ? -154.55 -26.64 22 5 SER A 6 ? ? -71.77 -75.48 23 5 GLN A 31 ? ? -68.46 4.82 24 5 GLU A 56 ? ? -155.09 75.08 25 5 GLN A 59 ? ? 64.48 -79.92 26 5 VAL A 62 ? ? -161.85 80.63 27 5 LEU A 63 ? ? -133.51 -45.77 28 5 LYS A 64 ? ? 49.69 82.37 29 5 PRO A 70 ? ? -80.56 35.09 30 5 SER A 71 ? ? 65.85 120.81 31 5 SER A 72 ? ? 69.58 102.48 32 6 SER A 6 ? ? 50.71 177.68 33 6 PRO A 54 ? ? -78.24 49.56 34 6 ASP A 55 ? ? 69.27 145.80 35 6 GLU A 56 ? ? 42.46 92.02 36 6 GLN A 59 ? ? 45.04 -172.82 37 6 LYS A 64 ? ? 35.42 83.51 38 6 SER A 72 ? ? 53.18 -150.79 39 7 SER A 6 ? ? -59.01 102.57 40 7 ALA A 33 ? ? -55.28 171.93 41 7 ASP A 55 ? ? -167.68 -62.69 42 7 GLU A 56 ? ? 30.30 78.69 43 7 PHE A 61 ? ? -155.52 82.92 44 7 LEU A 63 ? ? -143.72 58.57 45 8 SER A 3 ? ? 48.22 -159.19 46 8 ASP A 55 ? ? -163.40 -63.18 47 8 LYS A 58 ? ? 39.30 68.46 48 8 LYS A 64 ? ? 39.08 68.54 49 8 SER A 71 ? ? 47.47 -98.57 50 8 SER A 72 ? ? -146.22 -39.61 51 9 SER A 5 ? ? -165.36 -79.79 52 9 SER A 6 ? ? 99.13 76.36 53 9 GLN A 31 ? ? -69.39 1.52 54 9 LYS A 32 ? ? 39.44 51.36 55 9 PRO A 54 ? ? -71.93 30.89 56 9 SER A 57 ? ? -150.54 -31.84 57 9 LYS A 58 ? ? 60.26 -5.84 58 9 LYS A 60 ? ? -163.04 77.74 59 9 SER A 72 ? ? 67.34 -35.32 60 10 ASP A 55 ? ? 175.68 121.79 61 10 GLU A 56 ? ? -139.89 -64.89 62 10 SER A 57 ? ? 44.72 -166.23 63 10 GLN A 59 ? ? 59.18 -85.60 64 10 LYS A 67 ? ? -73.68 48.50 65 10 SER A 72 ? ? -158.32 -98.17 66 11 ALA A 33 ? ? -59.52 172.21 67 11 SER A 57 ? ? -56.25 102.87 68 11 LYS A 58 ? ? -165.67 94.52 69 11 SER A 68 ? ? 59.25 170.90 70 11 SER A 71 ? ? -155.24 -74.57 71 12 SER A 3 ? ? -59.34 100.26 72 12 GLN A 59 ? ? -67.54 99.02 73 12 LEU A 63 ? ? 53.57 -145.96 74 12 THR A 65 ? ? 62.95 147.42 75 12 SER A 72 ? ? 56.83 175.01 76 13 SER A 2 ? ? 57.88 85.07 77 13 SER A 3 ? ? 69.91 171.13 78 13 MET A 8 ? ? -67.67 -71.37 79 13 THR A 65 ? ? 68.05 152.60 80 13 SER A 72 ? ? -135.45 -39.73 81 14 SER A 3 ? ? -143.91 45.08 82 14 LEU A 52 ? ? -60.10 -75.66 83 14 ASP A 55 ? ? -170.31 94.51 84 14 LYS A 58 ? ? -136.04 -63.19 85 14 GLN A 59 ? ? 65.11 -66.77 86 14 LYS A 60 ? ? 59.00 17.88 87 14 PHE A 61 ? ? -117.38 67.78 88 14 PRO A 70 ? ? -69.25 95.02 89 14 SER A 71 ? ? -66.01 -176.22 90 15 LYS A 58 ? ? -150.51 -50.44 91 15 LYS A 60 ? ? 44.93 94.44 92 15 LYS A 64 ? ? 52.12 -155.08 93 16 SER A 2 ? ? -153.05 -39.67 94 16 LYS A 60 ? ? 68.19 -178.99 95 16 LYS A 64 ? ? -125.09 -167.90 96 16 SER A 68 ? ? 42.96 74.07 97 17 LYS A 32 ? ? 39.13 59.20 98 17 PRO A 54 ? ? -59.97 3.72 99 17 SER A 57 ? ? 28.58 55.48 100 17 SER A 68 ? ? 60.48 -153.93 101 17 SER A 71 ? ? 56.46 -171.41 102 18 SER A 6 ? ? -72.97 26.81 103 18 PRO A 66 ? ? -66.65 -166.96 104 18 PRO A 70 ? ? -69.63 -71.02 105 18 SER A 72 ? ? -81.29 36.55 106 19 SER A 3 ? ? -126.75 -68.74 107 19 SER A 5 ? ? 36.78 59.80 108 19 GLU A 56 ? ? -155.66 46.70 109 19 SER A 68 ? ? 70.27 -0.81 110 19 SER A 72 ? ? -173.90 112.81 111 20 SER A 3 ? ? -155.62 -13.20 112 20 SER A 57 ? ? -138.14 -83.98 113 20 GLN A 59 ? ? 35.44 66.96 114 20 LEU A 63 ? ? -122.17 -93.54 115 20 SER A 71 ? ? -156.15 -70.98 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 5 SER A 2 ? ? SER A 3 ? ? 149.98 2 5 PRO A 70 ? ? SER A 71 ? ? -149.55 3 10 GLY A 53 ? ? PRO A 54 ? ? -146.01 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 3 ARG A 11 ? ? 0.088 'SIDE CHAIN' 2 3 ARG A 26 ? ? 0.078 'SIDE CHAIN' 3 6 ARG A 11 ? ? 0.083 'SIDE CHAIN' 4 6 ARG A 24 ? ? 0.097 'SIDE CHAIN' 5 10 ARG A 24 ? ? 0.081 'SIDE CHAIN' 6 16 ARG A 11 ? ? 0.082 'SIDE CHAIN' #