data_1X5C # _entry.id 1X5C # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1X5C pdb_00001x5c 10.2210/pdb1x5c/pdb RCSB RCSB024398 ? ? WWPDB D_1000024398 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hss001002456.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1X5C _pdbx_database_status.recvd_initial_deposition_date 2005-05-15 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tochio, N.' 1 'Koshiba, S.' 2 'Inoue, M.' 3 'Kigawa, T.' 4 'Yokoyama, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title 'The solution structure of the second thioredoxin-like domain of human Protein disulfide-isomerase' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tochio, N.' 1 ? primary 'Koshiba, S.' 2 ? primary 'Inoue, M.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Yokoyama, S.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Protein disulfide-isomerase' _entity.formula_weight 13251.812 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 5.3.4.1 _entity.pdbx_mutation ? _entity.pdbx_fragment 'Thioredoxin like domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PDI, Prolyl 4- hydroxylase beta subunit, Cellular thyroid hormone binding protein, p55' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSF PTLKFFPASADRTVIDYNGERTLDGFKKFLESGGQSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSF PTLKFFPASADRTVIDYNGERTLDGFKKFLESGGQSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hss001002456.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 PRO n 1 9 VAL n 1 10 LYS n 1 11 VAL n 1 12 LEU n 1 13 VAL n 1 14 GLY n 1 15 LYS n 1 16 ASN n 1 17 PHE n 1 18 GLU n 1 19 ASP n 1 20 VAL n 1 21 ALA n 1 22 PHE n 1 23 ASP n 1 24 GLU n 1 25 LYS n 1 26 LYS n 1 27 ASN n 1 28 VAL n 1 29 PHE n 1 30 VAL n 1 31 GLU n 1 32 PHE n 1 33 TYR n 1 34 ALA n 1 35 PRO n 1 36 TRP n 1 37 CYS n 1 38 GLY n 1 39 HIS n 1 40 CYS n 1 41 LYS n 1 42 GLN n 1 43 LEU n 1 44 ALA n 1 45 PRO n 1 46 ILE n 1 47 TRP n 1 48 ASP n 1 49 LYS n 1 50 LEU n 1 51 GLY n 1 52 GLU n 1 53 THR n 1 54 TYR n 1 55 LYS n 1 56 ASP n 1 57 HIS n 1 58 GLU n 1 59 ASN n 1 60 ILE n 1 61 VAL n 1 62 ILE n 1 63 ALA n 1 64 LYS n 1 65 MET n 1 66 ASP n 1 67 SER n 1 68 THR n 1 69 ALA n 1 70 ASN n 1 71 GLU n 1 72 VAL n 1 73 GLU n 1 74 ALA n 1 75 VAL n 1 76 LYS n 1 77 VAL n 1 78 HIS n 1 79 SER n 1 80 PHE n 1 81 PRO n 1 82 THR n 1 83 LEU n 1 84 LYS n 1 85 PHE n 1 86 PHE n 1 87 PRO n 1 88 ALA n 1 89 SER n 1 90 ALA n 1 91 ASP n 1 92 ARG n 1 93 THR n 1 94 VAL n 1 95 ILE n 1 96 ASP n 1 97 TYR n 1 98 ASN n 1 99 GLY n 1 100 GLU n 1 101 ARG n 1 102 THR n 1 103 LEU n 1 104 ASP n 1 105 GLY n 1 106 PHE n 1 107 LYS n 1 108 LYS n 1 109 PHE n 1 110 LEU n 1 111 GLU n 1 112 SER n 1 113 GLY n 1 114 GLY n 1 115 GLN n 1 116 SER n 1 117 GLY n 1 118 PRO n 1 119 SER n 1 120 SER n 1 121 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene P4HB _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P040628-09 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PDIA1_HUMAN _struct_ref.pdbx_db_accession P07237 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSFPTLKFFP ASADRTVIDYNGERTLDGFKKFLESGGQ ; _struct_ref.pdbx_align_begin 368 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1X5C _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 115 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P07237 _struct_ref_seq.db_align_beg 368 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 475 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 115 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1X5C GLY A 1 ? UNP P07237 ? ? 'cloning artifact' 1 1 1 1X5C SER A 2 ? UNP P07237 ? ? 'cloning artifact' 2 2 1 1X5C SER A 3 ? UNP P07237 ? ? 'cloning artifact' 3 3 1 1X5C GLY A 4 ? UNP P07237 ? ? 'cloning artifact' 4 4 1 1X5C SER A 5 ? UNP P07237 ? ? 'cloning artifact' 5 5 1 1X5C SER A 6 ? UNP P07237 ? ? 'cloning artifact' 6 6 1 1X5C GLY A 7 ? UNP P07237 ? ? 'cloning artifact' 7 7 1 1X5C SER A 116 ? UNP P07237 ? ? 'cloning artifact' 116 8 1 1X5C GLY A 117 ? UNP P07237 ? ? 'cloning artifact' 117 9 1 1X5C PRO A 118 ? UNP P07237 ? ? 'cloning artifact' 118 10 1 1X5C SER A 119 ? UNP P07237 ? ? 'cloning artifact' 119 11 1 1X5C SER A 120 ? UNP P07237 ? ? 'cloning artifact' 120 12 1 1X5C GLY A 121 ? UNP P07237 ? ? 'cloning artifact' 121 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.2mM thioredoxin like domain U-15N,13C; 20mM d-Tris HCl; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 900 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 1X5C _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1X5C _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function,structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1X5C _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9044 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 1X5C _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1X5C _struct.title 'The solution structure of the second thioredoxin-like domain of human Protein disulfide-isomerase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1X5C _struct_keywords.pdbx_keywords ISOMERASE _struct_keywords.text ;DSI, ERBA2L, GIT, PDI, PDIA1, PO4DB, PO4HB, PROHB, thioredoxin like domain, redox, structural genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, ISOMERASE ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 16 ? ALA A 21 ? ASN A 16 ALA A 21 1 ? 6 HELX_P HELX_P2 2 CYS A 37 ? GLU A 52 ? CYS A 37 GLU A 52 1 ? 16 HELX_P HELX_P3 3 THR A 53 ? LYS A 55 ? THR A 53 LYS A 55 5 ? 3 HELX_P HELX_P4 4 THR A 102 ? GLY A 113 ? THR A 102 GLY A 113 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PHE 80 A . ? PHE 80 A PRO 81 A ? PRO 81 A 1 0.03 2 PHE 80 A . ? PHE 80 A PRO 81 A ? PRO 81 A 2 0.03 3 PHE 80 A . ? PHE 80 A PRO 81 A ? PRO 81 A 3 -0.04 4 PHE 80 A . ? PHE 80 A PRO 81 A ? PRO 81 A 4 0.02 5 PHE 80 A . ? PHE 80 A PRO 81 A ? PRO 81 A 5 0.07 6 PHE 80 A . ? PHE 80 A PRO 81 A ? PRO 81 A 6 0.03 7 PHE 80 A . ? PHE 80 A PRO 81 A ? PRO 81 A 7 0.06 8 PHE 80 A . ? PHE 80 A PRO 81 A ? PRO 81 A 8 -0.04 9 PHE 80 A . ? PHE 80 A PRO 81 A ? PRO 81 A 9 0.02 10 PHE 80 A . ? PHE 80 A PRO 81 A ? PRO 81 A 10 0.03 11 PHE 80 A . ? PHE 80 A PRO 81 A ? PRO 81 A 11 0.00 12 PHE 80 A . ? PHE 80 A PRO 81 A ? PRO 81 A 12 0.00 13 PHE 80 A . ? PHE 80 A PRO 81 A ? PRO 81 A 13 0.07 14 PHE 80 A . ? PHE 80 A PRO 81 A ? PRO 81 A 14 0.04 15 PHE 80 A . ? PHE 80 A PRO 81 A ? PRO 81 A 15 -0.03 16 PHE 80 A . ? PHE 80 A PRO 81 A ? PRO 81 A 16 0.04 17 PHE 80 A . ? PHE 80 A PRO 81 A ? PRO 81 A 17 0.01 18 PHE 80 A . ? PHE 80 A PRO 81 A ? PRO 81 A 18 0.02 19 PHE 80 A . ? PHE 80 A PRO 81 A ? PRO 81 A 19 0.04 20 PHE 80 A . ? PHE 80 A PRO 81 A ? PRO 81 A 20 0.01 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 10 ? LEU A 12 ? LYS A 10 LEU A 12 A 2 ILE A 60 ? ASP A 66 ? ILE A 60 ASP A 66 A 3 ASN A 27 ? TYR A 33 ? ASN A 27 TYR A 33 A 4 THR A 82 ? PHE A 86 ? THR A 82 PHE A 86 A 5 ILE A 95 ? ASP A 96 ? ILE A 95 ASP A 96 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 10 ? N LYS A 10 O LYS A 64 ? O LYS A 64 A 2 3 O VAL A 61 ? O VAL A 61 N ASN A 27 ? N ASN A 27 A 3 4 N PHE A 32 ? N PHE A 32 O THR A 82 ? O THR A 82 A 4 5 N PHE A 85 ? N PHE A 85 O ILE A 95 ? O ILE A 95 # _database_PDB_matrix.entry_id 1X5C _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1X5C _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 ASN 16 16 16 ASN ASN A . n A 1 17 PHE 17 17 17 PHE PHE A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 ASP 19 19 19 ASP ASP A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 PHE 22 22 22 PHE PHE A . n A 1 23 ASP 23 23 23 ASP ASP A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 PHE 29 29 29 PHE PHE A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 PHE 32 32 32 PHE PHE A . n A 1 33 TYR 33 33 33 TYR TYR A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 PRO 35 35 35 PRO PRO A . n A 1 36 TRP 36 36 36 TRP TRP A . n A 1 37 CYS 37 37 37 CYS CYS A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 HIS 39 39 39 HIS HIS A . n A 1 40 CYS 40 40 40 CYS CYS A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 GLN 42 42 42 GLN GLN A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 ILE 46 46 46 ILE ILE A . n A 1 47 TRP 47 47 47 TRP TRP A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 THR 53 53 53 THR THR A . n A 1 54 TYR 54 54 54 TYR TYR A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 ASP 56 56 56 ASP ASP A . n A 1 57 HIS 57 57 57 HIS HIS A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 ILE 60 60 60 ILE ILE A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 MET 65 65 65 MET MET A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 THR 68 68 68 THR THR A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 ASN 70 70 70 ASN ASN A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 HIS 78 78 78 HIS HIS A . n A 1 79 SER 79 79 79 SER SER A . n A 1 80 PHE 80 80 80 PHE PHE A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 THR 82 82 82 THR THR A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 LYS 84 84 84 LYS LYS A . n A 1 85 PHE 85 85 85 PHE PHE A . n A 1 86 PHE 86 86 86 PHE PHE A . n A 1 87 PRO 87 87 87 PRO PRO A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 SER 89 89 89 SER SER A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 ASP 91 91 91 ASP ASP A . n A 1 92 ARG 92 92 92 ARG ARG A . n A 1 93 THR 93 93 93 THR THR A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 ILE 95 95 95 ILE ILE A . n A 1 96 ASP 96 96 96 ASP ASP A . n A 1 97 TYR 97 97 97 TYR TYR A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 GLY 99 99 99 GLY GLY A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 ARG 101 101 101 ARG ARG A . n A 1 102 THR 102 102 102 THR THR A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 ASP 104 104 104 ASP ASP A . n A 1 105 GLY 105 105 105 GLY GLY A . n A 1 106 PHE 106 106 106 PHE PHE A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 LYS 108 108 108 LYS LYS A . n A 1 109 PHE 109 109 109 PHE PHE A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 GLU 111 111 111 GLU GLU A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 GLY 113 113 113 GLY GLY A . n A 1 114 GLY 114 114 114 GLY GLY A . n A 1 115 GLN 115 115 115 GLN GLN A . n A 1 116 SER 116 116 116 SER SER A . n A 1 117 GLY 117 117 117 GLY GLY A . n A 1 118 PRO 118 118 118 PRO PRO A . n A 1 119 SER 119 119 119 SER SER A . n A 1 120 SER 120 120 120 SER SER A . n A 1 121 GLY 121 121 121 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-15 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 3 ? ? -161.78 108.36 2 1 SER A 5 ? ? -130.22 -48.13 3 1 SER A 6 ? ? -41.36 159.78 4 1 HIS A 57 ? ? -66.95 -175.39 5 1 ALA A 88 ? ? -63.41 74.70 6 1 ARG A 92 ? ? -92.10 37.40 7 1 ASN A 98 ? ? -112.69 50.10 8 1 GLU A 111 ? ? -38.72 -35.90 9 2 SER A 5 ? ? -96.77 43.31 10 2 HIS A 39 ? ? -39.28 -33.92 11 2 HIS A 57 ? ? -66.89 -176.31 12 2 ALA A 88 ? ? -83.14 40.45 13 2 ARG A 92 ? ? -93.79 49.75 14 2 GLU A 111 ? ? -38.94 -37.91 15 3 CYS A 37 ? ? -57.21 109.44 16 3 HIS A 57 ? ? -66.26 -174.81 17 3 ARG A 92 ? ? 34.34 46.42 18 3 GLU A 111 ? ? -36.53 -38.82 19 3 SER A 120 ? ? -134.47 -57.86 20 4 SER A 2 ? ? -61.56 89.32 21 4 SER A 5 ? ? -101.69 44.85 22 4 ALA A 21 ? ? -92.28 -63.75 23 4 CYS A 37 ? ? -58.66 103.70 24 4 HIS A 57 ? ? -65.01 -175.02 25 4 SER A 89 ? ? -35.28 140.64 26 4 ARG A 92 ? ? -85.63 40.00 27 4 GLU A 111 ? ? -38.01 -38.83 28 5 HIS A 57 ? ? -66.11 -174.71 29 5 ALA A 88 ? ? -77.96 47.29 30 5 GLU A 111 ? ? -37.35 -37.94 31 5 SER A 119 ? ? -35.49 113.43 32 6 SER A 6 ? ? -64.91 96.53 33 6 HIS A 57 ? ? -68.24 -174.36 34 6 ARG A 101 ? ? 74.50 46.45 35 6 GLU A 111 ? ? -36.57 -36.58 36 6 PRO A 118 ? ? -69.75 2.84 37 7 HIS A 57 ? ? -65.84 -173.52 38 7 ARG A 92 ? ? 34.30 42.35 39 7 GLU A 111 ? ? -38.35 -37.97 40 7 SER A 120 ? ? -95.89 41.75 41 8 SER A 6 ? ? -38.82 -38.45 42 8 HIS A 57 ? ? -64.48 -174.74 43 8 ARG A 92 ? ? 31.98 53.46 44 8 GLU A 111 ? ? -37.36 -36.53 45 8 SER A 119 ? ? -121.91 -55.78 46 9 HIS A 39 ? ? -39.35 -38.31 47 9 HIS A 57 ? ? -66.00 -174.88 48 9 ASP A 91 ? ? -90.95 34.61 49 9 ARG A 92 ? ? 35.94 42.81 50 9 ARG A 101 ? ? 74.43 45.84 51 9 GLU A 111 ? ? -36.59 -38.71 52 9 PRO A 118 ? ? -69.81 4.95 53 10 HIS A 57 ? ? -67.53 -175.99 54 10 ARG A 92 ? ? 37.14 47.25 55 10 SER A 116 ? ? -175.18 134.18 56 10 SER A 119 ? ? -48.89 155.11 57 11 SER A 2 ? ? -116.50 50.86 58 11 HIS A 57 ? ? -64.29 -174.68 59 11 ALA A 88 ? ? -75.75 48.91 60 11 ASP A 91 ? ? -99.66 38.95 61 11 ARG A 92 ? ? 36.20 38.56 62 11 SER A 116 ? ? -173.00 129.46 63 12 SER A 2 ? ? -58.04 97.77 64 12 HIS A 57 ? ? -68.96 -174.54 65 12 ASP A 91 ? ? -84.70 34.77 66 12 ARG A 92 ? ? 34.06 48.94 67 12 GLU A 111 ? ? -37.86 -38.76 68 12 SER A 116 ? ? -107.02 -60.95 69 12 SER A 119 ? ? -125.38 -55.80 70 12 SER A 120 ? ? 38.44 42.01 71 13 SER A 5 ? ? -170.04 140.57 72 13 HIS A 57 ? ? -67.90 -174.42 73 13 ALA A 88 ? ? -66.97 84.45 74 13 ALA A 90 ? ? -49.13 -18.56 75 13 GLU A 111 ? ? -37.61 -34.90 76 14 CYS A 37 ? ? -60.00 106.50 77 14 HIS A 57 ? ? -66.80 -175.04 78 14 ARG A 92 ? ? 28.57 47.82 79 14 ARG A 101 ? ? 73.21 44.08 80 15 SER A 6 ? ? -91.53 43.99 81 15 HIS A 57 ? ? -62.21 -174.33 82 15 ASP A 91 ? ? -91.90 32.49 83 15 ARG A 92 ? ? 33.25 39.89 84 16 HIS A 57 ? ? -67.98 -176.26 85 16 ALA A 88 ? ? -78.62 48.38 86 16 ALA A 90 ? ? -86.80 31.07 87 16 SER A 119 ? ? -47.13 155.67 88 17 HIS A 57 ? ? -64.12 -175.20 89 17 ARG A 92 ? ? 35.38 35.70 90 18 HIS A 57 ? ? -64.15 -175.08 91 18 ALA A 88 ? ? -62.03 80.36 92 18 ARG A 92 ? ? 35.42 54.52 93 18 ASN A 98 ? ? -118.71 51.38 94 18 GLU A 111 ? ? -38.25 -39.26 95 18 PRO A 118 ? ? -69.69 98.67 96 19 ALA A 21 ? ? -91.72 -63.83 97 19 HIS A 57 ? ? -63.99 -175.61 98 19 ARG A 92 ? ? -98.76 40.21 99 19 GLN A 115 ? ? -52.11 108.32 100 20 PHE A 22 ? ? -81.96 48.68 101 20 LYS A 25 ? ? 48.87 28.62 102 20 HIS A 57 ? ? -63.50 -175.82 103 20 ALA A 88 ? ? -81.78 42.24 104 20 ARG A 92 ? ? 35.33 50.57 105 20 PRO A 118 ? ? -69.79 80.94 106 20 SER A 120 ? ? 37.71 40.73 #