data_1X5H # _entry.id 1X5H # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1X5H pdb_00001x5h 10.2210/pdb1x5h/pdb RCSB RCSB024403 ? ? WWPDB D_1000024403 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hso002001179.4 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1X5H _pdbx_database_status.recvd_initial_deposition_date 2005-05-15 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tochio, N.' 1 'Sasagawa, A.' 2 'Koshiba, S.' 3 'Inoue, M.' 4 'Kigawa, T.' 5 'Yokoyama, S.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title 'The solution structure of the third fibronectin type III domain of human Neogenin' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tochio, N.' 1 ? primary 'Sasagawa, A.' 2 ? primary 'Koshiba, S.' 3 ? primary 'Inoue, M.' 4 ? primary 'Kigawa, T.' 5 ? primary 'Yokoyama, S.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Neogenin _entity.formula_weight 14051.392 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'fn3 domain' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQL IEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLDETRVPEVSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQL IEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLDETRVPEVSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hso002001179.4 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 ASP n 1 9 VAL n 1 10 ALA n 1 11 VAL n 1 12 ARG n 1 13 THR n 1 14 LEU n 1 15 SER n 1 16 ASP n 1 17 VAL n 1 18 PRO n 1 19 SER n 1 20 ALA n 1 21 ALA n 1 22 PRO n 1 23 GLN n 1 24 ASN n 1 25 LEU n 1 26 SER n 1 27 LEU n 1 28 GLU n 1 29 VAL n 1 30 ARG n 1 31 ASN n 1 32 SER n 1 33 LYS n 1 34 SER n 1 35 ILE n 1 36 MET n 1 37 ILE n 1 38 HIS n 1 39 TRP n 1 40 GLN n 1 41 PRO n 1 42 PRO n 1 43 ALA n 1 44 PRO n 1 45 ALA n 1 46 THR n 1 47 GLN n 1 48 ASN n 1 49 GLY n 1 50 GLN n 1 51 ILE n 1 52 THR n 1 53 GLY n 1 54 TYR n 1 55 LYS n 1 56 ILE n 1 57 ARG n 1 58 TYR n 1 59 ARG n 1 60 LYS n 1 61 ALA n 1 62 SER n 1 63 ARG n 1 64 LYS n 1 65 SER n 1 66 ASP n 1 67 VAL n 1 68 THR n 1 69 GLU n 1 70 THR n 1 71 LEU n 1 72 VAL n 1 73 SER n 1 74 GLY n 1 75 THR n 1 76 GLN n 1 77 LEU n 1 78 SER n 1 79 GLN n 1 80 LEU n 1 81 ILE n 1 82 GLU n 1 83 GLY n 1 84 LEU n 1 85 ASP n 1 86 ARG n 1 87 GLY n 1 88 THR n 1 89 GLU n 1 90 TYR n 1 91 ASN n 1 92 PHE n 1 93 ARG n 1 94 VAL n 1 95 ALA n 1 96 ALA n 1 97 LEU n 1 98 THR n 1 99 ILE n 1 100 ASN n 1 101 GLY n 1 102 THR n 1 103 GLY n 1 104 PRO n 1 105 ALA n 1 106 THR n 1 107 ASP n 1 108 TRP n 1 109 LEU n 1 110 SER n 1 111 ALA n 1 112 GLU n 1 113 THR n 1 114 PHE n 1 115 GLU n 1 116 SER n 1 117 ASP n 1 118 LEU n 1 119 ASP n 1 120 GLU n 1 121 THR n 1 122 ARG n 1 123 VAL n 1 124 PRO n 1 125 GLU n 1 126 VAL n 1 127 SER n 1 128 GLY n 1 129 PRO n 1 130 SER n 1 131 SER n 1 132 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene NEO1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P041213-04 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NEO1_HUMAN _struct_ref.pdbx_db_accession Q92859 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRG TEYNFRVAALTINGTGPATDWLSAETFESDLDETRVPEV ; _struct_ref.pdbx_align_begin 616 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1X5H _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 126 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q92859 _struct_ref_seq.db_align_beg 616 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 734 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 126 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1X5H GLY A 1 ? UNP Q92859 ? ? 'cloning artifact' 1 1 1 1X5H SER A 2 ? UNP Q92859 ? ? 'cloning artifact' 2 2 1 1X5H SER A 3 ? UNP Q92859 ? ? 'cloning artifact' 3 3 1 1X5H GLY A 4 ? UNP Q92859 ? ? 'cloning artifact' 4 4 1 1X5H SER A 5 ? UNP Q92859 ? ? 'cloning artifact' 5 5 1 1X5H SER A 6 ? UNP Q92859 ? ? 'cloning artifact' 6 6 1 1X5H GLY A 7 ? UNP Q92859 ? ? 'cloning artifact' 7 7 1 1X5H SER A 127 ? UNP Q92859 ? ? 'cloning artifact' 127 8 1 1X5H GLY A 128 ? UNP Q92859 ? ? 'cloning artifact' 128 9 1 1X5H PRO A 129 ? UNP Q92859 ? ? 'cloning artifact' 129 10 1 1X5H SER A 130 ? UNP Q92859 ? ? 'cloning artifact' 130 11 1 1X5H SER A 131 ? UNP Q92859 ? ? 'cloning artifact' 131 12 1 1X5H GLY A 132 ? UNP Q92859 ? ? 'cloning artifact' 132 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.5mM FN3 domain U-15N,13C; 20mM d-Tris HCl; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 900 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 1X5H _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1X5H _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function,structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1X5H _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9295 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 1X5H _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1X5H _struct.title 'The solution structure of the third fibronectin type III domain of human Neogenin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1X5H _struct_keywords.pdbx_keywords 'CELL ADHESION' _struct_keywords.text ;RGM binding, fibronectin type III domain, structural genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, CELL ADHESION ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 23 ? GLU A 28 ? GLN A 23 GLU A 28 A 2 SER A 34 ? GLN A 40 ? SER A 34 GLN A 40 A 3 SER A 78 ? GLU A 82 ? SER A 78 GLU A 82 B 1 ILE A 51 ? TYR A 54 ? ILE A 51 TYR A 54 B 2 ALA A 95 ? THR A 98 ? ALA A 95 THR A 98 B 3 GLY A 101 ? ALA A 105 ? GLY A 101 ALA A 105 C 1 ARG A 63 ? THR A 68 ? ARG A 63 THR A 68 C 2 ARG A 57 ? LYS A 60 ? ARG A 57 LYS A 60 C 3 GLU A 89 ? ARG A 93 ? GLU A 89 ARG A 93 C 4 LEU A 109 ? GLU A 112 ? LEU A 109 GLU A 112 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 26 ? N SER A 26 O HIS A 38 ? O HIS A 38 A 2 3 N ILE A 37 ? N ILE A 37 O GLN A 79 ? O GLN A 79 B 1 2 N THR A 52 ? N THR A 52 O LEU A 97 ? O LEU A 97 B 2 3 N THR A 98 ? N THR A 98 O GLY A 101 ? O GLY A 101 C 1 2 O THR A 68 ? O THR A 68 N TYR A 58 ? N TYR A 58 C 2 3 N ARG A 59 ? N ARG A 59 O ASN A 91 ? O ASN A 91 C 3 4 N TYR A 90 ? N TYR A 90 O ALA A 111 ? O ALA A 111 # _database_PDB_matrix.entry_id 1X5H _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1X5H _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 ASP 8 8 8 ASP ASP A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 ARG 12 12 12 ARG ARG A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 ASP 16 16 16 ASP ASP A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 SER 19 19 19 SER SER A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 GLN 23 23 23 GLN GLN A . n A 1 24 ASN 24 24 24 ASN ASN A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 GLU 28 28 28 GLU GLU A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 ARG 30 30 30 ARG ARG A . n A 1 31 ASN 31 31 31 ASN ASN A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 MET 36 36 36 MET MET A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 HIS 38 38 38 HIS HIS A . n A 1 39 TRP 39 39 39 TRP TRP A . n A 1 40 GLN 40 40 40 GLN GLN A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 ALA 45 45 45 ALA ALA A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 GLN 47 47 47 GLN GLN A . n A 1 48 ASN 48 48 48 ASN ASN A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 GLN 50 50 50 GLN GLN A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 TYR 54 54 54 TYR TYR A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 TYR 58 58 58 TYR TYR A . n A 1 59 ARG 59 59 59 ARG ARG A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 ARG 63 63 63 ARG ARG A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 THR 68 68 68 THR THR A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 THR 70 70 70 THR THR A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 SER 73 73 73 SER SER A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 THR 75 75 75 THR THR A . n A 1 76 GLN 76 76 76 GLN GLN A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 GLN 79 79 79 GLN GLN A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 ILE 81 81 81 ILE ILE A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 GLY 83 83 83 GLY GLY A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 ARG 86 86 86 ARG ARG A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 THR 88 88 88 THR THR A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 TYR 90 90 90 TYR TYR A . n A 1 91 ASN 91 91 91 ASN ASN A . n A 1 92 PHE 92 92 92 PHE PHE A . n A 1 93 ARG 93 93 93 ARG ARG A . n A 1 94 VAL 94 94 94 VAL VAL A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 THR 98 98 98 THR THR A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 ASN 100 100 100 ASN ASN A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 THR 102 102 102 THR THR A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 PRO 104 104 104 PRO PRO A . n A 1 105 ALA 105 105 105 ALA ALA A . n A 1 106 THR 106 106 106 THR THR A . n A 1 107 ASP 107 107 107 ASP ASP A . n A 1 108 TRP 108 108 108 TRP TRP A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 SER 110 110 110 SER SER A . n A 1 111 ALA 111 111 111 ALA ALA A . n A 1 112 GLU 112 112 112 GLU GLU A . n A 1 113 THR 113 113 113 THR THR A . n A 1 114 PHE 114 114 114 PHE PHE A . n A 1 115 GLU 115 115 115 GLU GLU A . n A 1 116 SER 116 116 116 SER SER A . n A 1 117 ASP 117 117 117 ASP ASP A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 ASP 119 119 119 ASP ASP A . n A 1 120 GLU 120 120 120 GLU GLU A . n A 1 121 THR 121 121 121 THR THR A . n A 1 122 ARG 122 122 122 ARG ARG A . n A 1 123 VAL 123 123 123 VAL VAL A . n A 1 124 PRO 124 124 124 PRO PRO A . n A 1 125 GLU 125 125 125 GLU GLU A . n A 1 126 VAL 126 126 126 VAL VAL A . n A 1 127 SER 127 127 127 SER SER A . n A 1 128 GLY 128 128 128 GLY GLY A . n A 1 129 PRO 129 129 129 PRO PRO A . n A 1 130 SER 130 130 130 SER SER A . n A 1 131 SER 131 131 131 SER SER A . n A 1 132 GLY 132 132 132 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-15 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 47 ? ? -45.56 103.93 2 1 ASN A 48 ? ? -86.79 37.27 3 1 ASP A 107 ? ? -44.14 168.51 4 1 PRO A 124 ? ? -69.77 -171.63 5 1 PRO A 129 ? ? -69.80 -174.94 6 2 VAL A 17 ? ? -35.24 145.97 7 2 VAL A 29 ? ? -55.80 92.89 8 2 GLN A 47 ? ? -38.52 146.77 9 3 SER A 6 ? ? -55.82 176.54 10 3 ASP A 8 ? ? -48.56 175.64 11 3 ALA A 10 ? ? -173.90 117.82 12 3 ARG A 12 ? ? 38.04 39.09 13 3 THR A 13 ? ? -85.94 32.56 14 3 VAL A 17 ? ? -38.00 154.25 15 3 VAL A 29 ? ? -58.41 80.37 16 3 TRP A 108 ? ? -52.17 106.33 17 3 ASP A 117 ? ? -51.78 93.97 18 3 ASP A 119 ? ? -55.51 93.24 19 3 PRO A 124 ? ? -69.70 -177.32 20 3 PRO A 129 ? ? -69.72 -176.14 21 4 SER A 3 ? ? -35.67 151.86 22 4 VAL A 17 ? ? -37.94 153.22 23 4 VAL A 29 ? ? -57.21 84.75 24 4 GLN A 47 ? ? -36.74 133.79 25 4 LYS A 64 ? ? -80.87 42.94 26 4 SER A 65 ? ? -130.74 -33.38 27 4 TRP A 108 ? ? -45.80 109.45 28 4 VAL A 126 ? ? -33.86 138.88 29 4 PRO A 129 ? ? -69.77 -165.87 30 5 VAL A 17 ? ? -41.51 153.34 31 5 VAL A 29 ? ? -45.61 92.67 32 5 GLN A 47 ? ? -33.15 -35.19 33 5 VAL A 72 ? ? -130.32 -77.42 34 5 PRO A 124 ? ? -69.77 -177.43 35 5 SER A 131 ? ? -35.91 148.27 36 6 ALA A 10 ? ? -166.65 114.34 37 6 ASP A 16 ? ? -82.53 46.39 38 6 PRO A 18 ? ? -69.72 84.13 39 6 ALA A 20 ? ? -169.69 115.43 40 6 VAL A 29 ? ? -52.41 108.57 41 6 GLN A 47 ? ? -48.96 107.38 42 6 ASP A 107 ? ? -36.34 142.69 43 6 TRP A 108 ? ? -56.65 98.36 44 6 THR A 113 ? ? -58.32 178.24 45 6 LEU A 118 ? ? -48.01 98.85 46 6 ASP A 119 ? ? -100.81 42.46 47 6 SER A 131 ? ? -123.66 -58.66 48 7 SER A 2 ? ? -49.38 175.70 49 7 VAL A 9 ? ? -39.66 154.42 50 7 LEU A 14 ? ? -67.77 99.83 51 7 PRO A 18 ? ? -69.70 81.19 52 7 ALA A 20 ? ? -174.54 121.62 53 7 VAL A 29 ? ? -62.61 95.45 54 7 ASN A 48 ? ? 38.65 32.68 55 7 ARG A 63 ? ? -108.16 63.91 56 7 LEU A 118 ? ? -61.26 91.74 57 7 PRO A 129 ? ? -69.82 -171.87 58 8 ALA A 10 ? ? -67.34 71.75 59 8 VAL A 17 ? ? -46.41 153.30 60 8 VAL A 29 ? ? -52.55 94.20 61 8 SER A 65 ? ? -134.34 -38.30 62 8 THR A 106 ? ? -46.24 160.59 63 8 ASP A 107 ? ? -57.32 177.82 64 8 GLU A 115 ? ? -37.16 -37.69 65 8 ASP A 119 ? ? -51.83 104.48 66 8 PRO A 129 ? ? -69.75 -174.57 67 9 VAL A 17 ? ? -47.03 150.60 68 9 VAL A 29 ? ? -53.05 105.64 69 9 GLN A 47 ? ? -39.10 143.97 70 9 ASP A 107 ? ? -33.02 136.23 71 9 TRP A 108 ? ? -55.61 104.70 72 9 ASP A 117 ? ? -67.07 85.73 73 10 VAL A 9 ? ? 32.62 42.07 74 10 VAL A 17 ? ? -44.38 154.16 75 10 VAL A 29 ? ? -58.90 90.02 76 10 GLN A 47 ? ? -59.73 99.93 77 10 SER A 65 ? ? -134.12 -36.22 78 10 ASP A 107 ? ? -33.96 139.04 79 10 TRP A 108 ? ? -49.13 106.26 80 10 GLU A 115 ? ? -39.73 -34.30 81 10 LEU A 118 ? ? -52.29 95.98 82 11 SER A 2 ? ? 35.66 42.27 83 11 VAL A 17 ? ? -43.90 150.30 84 11 VAL A 29 ? ? -51.49 88.06 85 11 ARG A 63 ? ? -104.34 73.39 86 11 ASP A 107 ? ? -39.59 138.40 87 11 TRP A 108 ? ? -54.00 106.11 88 11 GLU A 115 ? ? -38.62 -27.32 89 12 VAL A 9 ? ? -171.71 139.29 90 12 VAL A 17 ? ? -37.05 151.92 91 12 VAL A 29 ? ? -59.76 94.97 92 12 ARG A 63 ? ? -107.56 71.60 93 12 ASP A 107 ? ? -33.97 141.88 94 12 LEU A 118 ? ? -35.97 117.90 95 13 ALA A 10 ? ? -163.67 112.73 96 13 LEU A 14 ? ? -174.34 110.48 97 13 VAL A 17 ? ? -38.48 155.11 98 13 VAL A 29 ? ? -52.91 88.76 99 13 ASP A 107 ? ? -38.38 138.60 100 13 TRP A 108 ? ? -51.36 104.54 101 13 GLU A 115 ? ? -38.16 -37.01 102 13 PRO A 124 ? ? -69.74 -176.85 103 13 VAL A 126 ? ? -173.80 142.38 104 13 PRO A 129 ? ? -69.81 -171.22 105 14 ALA A 10 ? ? -172.54 137.03 106 14 LEU A 14 ? ? -92.34 50.00 107 14 SER A 19 ? ? -116.03 58.80 108 14 VAL A 29 ? ? -59.35 89.40 109 14 ARG A 63 ? ? -93.45 47.64 110 14 ASP A 107 ? ? -32.00 130.63 111 14 TRP A 108 ? ? -47.33 98.15 112 14 ASP A 117 ? ? -53.12 88.73 113 14 PRO A 124 ? ? -69.74 -174.00 114 14 GLU A 125 ? ? -167.14 115.34 115 14 PRO A 129 ? ? -69.78 -178.88 116 14 SER A 130 ? ? -171.98 128.83 117 15 VAL A 9 ? ? -87.39 41.41 118 15 THR A 13 ? ? -37.60 143.01 119 15 VAL A 17 ? ? -42.75 153.49 120 15 VAL A 29 ? ? -50.90 102.20 121 15 GLN A 47 ? ? -34.38 133.36 122 15 GLU A 115 ? ? -34.17 -38.45 123 15 ASP A 117 ? ? -68.31 97.89 124 15 VAL A 126 ? ? 32.03 45.46 125 15 SER A 130 ? ? -122.37 -55.31 126 16 VAL A 9 ? ? -36.78 126.80 127 16 SER A 19 ? ? -107.98 51.52 128 16 VAL A 29 ? ? -52.28 88.18 129 16 GLN A 47 ? ? -112.84 74.80 130 16 ASP A 107 ? ? -50.42 170.15 131 16 THR A 113 ? ? -56.76 172.80 132 16 GLU A 115 ? ? -36.50 -33.20 133 16 ASP A 119 ? ? 30.79 51.38 134 16 GLU A 120 ? ? -51.73 105.00 135 16 PRO A 124 ? ? -69.76 -179.85 136 16 PRO A 129 ? ? -69.72 -171.81 137 17 VAL A 29 ? ? -59.87 90.59 138 17 GLN A 47 ? ? -39.06 142.56 139 17 LYS A 64 ? ? 43.99 25.11 140 17 SER A 65 ? ? -132.83 -33.09 141 17 THR A 75 ? ? -83.52 33.83 142 17 GLU A 115 ? ? -34.56 -38.41 143 17 PRO A 124 ? ? -69.77 -173.95 144 17 SER A 131 ? ? -36.31 145.68 145 18 SER A 6 ? ? 37.73 42.38 146 18 ALA A 10 ? ? -35.19 122.59 147 18 ARG A 12 ? ? -103.99 -65.75 148 18 VAL A 29 ? ? -48.62 99.28 149 18 GLN A 47 ? ? -28.98 -42.11 150 18 SER A 65 ? ? -133.41 -34.15 151 18 ASP A 117 ? ? -86.39 47.12 152 18 GLU A 120 ? ? -173.54 123.79 153 18 ARG A 122 ? ? 38.44 47.14 154 18 PRO A 129 ? ? -69.74 87.54 155 18 SER A 131 ? ? -48.04 150.20 156 19 ALA A 10 ? ? -117.44 78.80 157 19 THR A 13 ? ? -35.79 137.17 158 19 VAL A 29 ? ? -63.01 93.08 159 19 ALA A 61 ? ? -39.63 -39.73 160 19 ASP A 107 ? ? -36.91 144.99 161 19 TRP A 108 ? ? -55.63 103.63 162 19 GLU A 115 ? ? -39.64 -34.23 163 19 PRO A 129 ? ? -69.74 -174.39 164 20 ASP A 8 ? ? -52.20 179.30 165 20 ALA A 10 ? ? -47.25 164.28 166 20 THR A 13 ? ? -93.26 32.47 167 20 VAL A 17 ? ? -47.19 151.50 168 20 VAL A 29 ? ? -58.38 94.41 169 20 GLN A 47 ? ? -35.30 134.48 170 20 ARG A 63 ? ? -118.60 68.51 171 20 ASP A 107 ? ? -46.27 168.91 172 20 LEU A 118 ? ? -35.42 113.54 #