data_1X6U # _entry.id 1X6U # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1X6U RCSB RCSB030012 WWPDB D_1000030012 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1G7U 'KDO8P synthase complexed with PEP' unspecified PDB 1G7V 'KDO8P complexed with mechanism-based inhibitor' unspecified PDB 1PHQ 'KDO8P synthase complexed with (E)-FPEP' unspecified PDB 1PL9 'KDO8P synthase complexed with (Z)-FPEP' unspecified PDB 1PHW 'KDO8P synthase complexed with 1-deoxy A5P' unspecified PDB 1Q3N 'KDO8P synthase complexed with PEP' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1X6U _pdbx_database_status.recvd_initial_deposition_date 2004-08-12 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Vainer, R.' 1 'Belakhov, V.' 2 'Rabkin, E.' 3 'Baasov, T.' 4 'Adir, N.' 5 # _citation.id primary _citation.title 'Crystal Structures of Escherichia coli KDO8P Synthase Complexes Reveal the Source of Catalytic Irreversibility' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 351 _citation.page_first 641 _citation.page_last 652 _citation.year 2005 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16023668 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2005.06.021 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vainer, R.' 1 ? primary 'Belakhov, V.' 2 ? primary 'Rabkin, E.' 3 ? primary 'Baasov, T.' 4 ? primary 'Adir, N.' 5 ? # _cell.entry_id 1X6U _cell.length_a 118.530 _cell.length_b 118.530 _cell.length_c 118.530 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1X6U _symmetry.space_group_name_H-M 'I 2 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 197 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '2-dehydro-3-deoxyphosphooctonate aldolase' 30870.676 1 2.5.1.55 ? ? ? 2 non-polymer syn '3-deoxy-8-O-phosphono-alpha-D-manno-oct-2-ulopyranosonic acid' 318.172 1 ? ? ? ? 3 water nat water 18.015 25 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Phospho-2-dehydro-3-deoxyoctonate aldolase, 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase, KDO-8-phosphate synthetase, KDO 8-P synthase, KDOPS ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MKQKVVSIGDINVANDLPFVLFGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMKI FQELKQTFGVKIITDVHEPSQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFKEGGN EKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSPVIFDVTHALQCRDPFGAASGGRRAQVAELARAGMAVGLAGLFIEA HPDPEHAKCDGPSALPLAKLEPFLKQMKAIDDLVKGFEELDTSK ; _entity_poly.pdbx_seq_one_letter_code_can ;MKQKVVSIGDINVANDLPFVLFGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMKI FQELKQTFGVKIITDVHEPSQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFKEGGN EKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSPVIFDVTHALQCRDPFGAASGGRRAQVAELARAGMAVGLAGLFIEA HPDPEHAKCDGPSALPLAKLEPFLKQMKAIDDLVKGFEELDTSK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 GLN n 1 4 LYS n 1 5 VAL n 1 6 VAL n 1 7 SER n 1 8 ILE n 1 9 GLY n 1 10 ASP n 1 11 ILE n 1 12 ASN n 1 13 VAL n 1 14 ALA n 1 15 ASN n 1 16 ASP n 1 17 LEU n 1 18 PRO n 1 19 PHE n 1 20 VAL n 1 21 LEU n 1 22 PHE n 1 23 GLY n 1 24 GLY n 1 25 MET n 1 26 ASN n 1 27 VAL n 1 28 LEU n 1 29 GLU n 1 30 SER n 1 31 ARG n 1 32 ASP n 1 33 LEU n 1 34 ALA n 1 35 MET n 1 36 ARG n 1 37 ILE n 1 38 CYS n 1 39 GLU n 1 40 HIS n 1 41 TYR n 1 42 VAL n 1 43 THR n 1 44 VAL n 1 45 THR n 1 46 GLN n 1 47 LYS n 1 48 LEU n 1 49 GLY n 1 50 ILE n 1 51 PRO n 1 52 TYR n 1 53 VAL n 1 54 PHE n 1 55 LYS n 1 56 ALA n 1 57 SER n 1 58 PHE n 1 59 ASP n 1 60 LYS n 1 61 ALA n 1 62 ASN n 1 63 ARG n 1 64 SER n 1 65 SER n 1 66 ILE n 1 67 HIS n 1 68 SER n 1 69 TYR n 1 70 ARG n 1 71 GLY n 1 72 PRO n 1 73 GLY n 1 74 LEU n 1 75 GLU n 1 76 GLU n 1 77 GLY n 1 78 MET n 1 79 LYS n 1 80 ILE n 1 81 PHE n 1 82 GLN n 1 83 GLU n 1 84 LEU n 1 85 LYS n 1 86 GLN n 1 87 THR n 1 88 PHE n 1 89 GLY n 1 90 VAL n 1 91 LYS n 1 92 ILE n 1 93 ILE n 1 94 THR n 1 95 ASP n 1 96 VAL n 1 97 HIS n 1 98 GLU n 1 99 PRO n 1 100 SER n 1 101 GLN n 1 102 ALA n 1 103 GLN n 1 104 PRO n 1 105 VAL n 1 106 ALA n 1 107 ASP n 1 108 VAL n 1 109 VAL n 1 110 ASP n 1 111 VAL n 1 112 ILE n 1 113 GLN n 1 114 LEU n 1 115 PRO n 1 116 ALA n 1 117 PHE n 1 118 LEU n 1 119 ALA n 1 120 ARG n 1 121 GLN n 1 122 THR n 1 123 ASP n 1 124 LEU n 1 125 VAL n 1 126 GLU n 1 127 ALA n 1 128 MET n 1 129 ALA n 1 130 LYS n 1 131 THR n 1 132 GLY n 1 133 ALA n 1 134 VAL n 1 135 ILE n 1 136 ASN n 1 137 VAL n 1 138 LYS n 1 139 LYS n 1 140 PRO n 1 141 GLN n 1 142 PHE n 1 143 VAL n 1 144 SER n 1 145 PRO n 1 146 GLY n 1 147 GLN n 1 148 MET n 1 149 GLY n 1 150 ASN n 1 151 ILE n 1 152 VAL n 1 153 ASP n 1 154 LYS n 1 155 PHE n 1 156 LYS n 1 157 GLU n 1 158 GLY n 1 159 GLY n 1 160 ASN n 1 161 GLU n 1 162 LYS n 1 163 VAL n 1 164 ILE n 1 165 LEU n 1 166 CYS n 1 167 ASP n 1 168 ARG n 1 169 GLY n 1 170 ALA n 1 171 ASN n 1 172 PHE n 1 173 GLY n 1 174 TYR n 1 175 ASP n 1 176 ASN n 1 177 LEU n 1 178 VAL n 1 179 VAL n 1 180 ASP n 1 181 MET n 1 182 LEU n 1 183 GLY n 1 184 PHE n 1 185 SER n 1 186 ILE n 1 187 MET n 1 188 LYS n 1 189 LYS n 1 190 VAL n 1 191 SER n 1 192 GLY n 1 193 ASN n 1 194 SER n 1 195 PRO n 1 196 VAL n 1 197 ILE n 1 198 PHE n 1 199 ASP n 1 200 VAL n 1 201 THR n 1 202 HIS n 1 203 ALA n 1 204 LEU n 1 205 GLN n 1 206 CYS n 1 207 ARG n 1 208 ASP n 1 209 PRO n 1 210 PHE n 1 211 GLY n 1 212 ALA n 1 213 ALA n 1 214 SER n 1 215 GLY n 1 216 GLY n 1 217 ARG n 1 218 ARG n 1 219 ALA n 1 220 GLN n 1 221 VAL n 1 222 ALA n 1 223 GLU n 1 224 LEU n 1 225 ALA n 1 226 ARG n 1 227 ALA n 1 228 GLY n 1 229 MET n 1 230 ALA n 1 231 VAL n 1 232 GLY n 1 233 LEU n 1 234 ALA n 1 235 GLY n 1 236 LEU n 1 237 PHE n 1 238 ILE n 1 239 GLU n 1 240 ALA n 1 241 HIS n 1 242 PRO n 1 243 ASP n 1 244 PRO n 1 245 GLU n 1 246 HIS n 1 247 ALA n 1 248 LYS n 1 249 CYS n 1 250 ASP n 1 251 GLY n 1 252 PRO n 1 253 SER n 1 254 ALA n 1 255 LEU n 1 256 PRO n 1 257 LEU n 1 258 ALA n 1 259 LYS n 1 260 LEU n 1 261 GLU n 1 262 PRO n 1 263 PHE n 1 264 LEU n 1 265 LYS n 1 266 GLN n 1 267 MET n 1 268 LYS n 1 269 ALA n 1 270 ILE n 1 271 ASP n 1 272 ASP n 1 273 LEU n 1 274 VAL n 1 275 LYS n 1 276 GLY n 1 277 PHE n 1 278 GLU n 1 279 GLU n 1 280 LEU n 1 281 ASP n 1 282 THR n 1 283 SER n 1 284 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene kdsA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain DH5alpha _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pJU1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code KDSA_ECOLI _struct_ref.pdbx_db_accession P0A715 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MKQKVVSIGDINVANDLPFVLFGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMKI FQELKQTFGVKIITDVHEPSQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFKEGGN EKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSPVIFDVTHALQCRDPFGAASGGRRAQVAELARAGMAVGLAGLFIEA HPDPEHAKCDGPSALPLAKLEPFLKQMKAIDDLVKGFEELDTSK ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1X6U _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 284 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P0A715 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 284 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 284 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DO8 'D-saccharide, alpha linking' n '3-deoxy-8-O-phosphono-alpha-D-manno-oct-2-ulopyranosonic acid' ? 'C8 H15 O11 P' 318.172 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1X6U _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.2 _exptl_crystal.density_percent_sol 42.8 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.4 _exptl_crystal_grow.pdbx_details 'PEG4000, Glycerol, Tris-HCl, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2003-11-28 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.934 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM30A' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM30A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.934 # _reflns.entry_id 1X6U _reflns.observed_criterion_sigma_F 1 _reflns.observed_criterion_sigma_I 1 _reflns.d_resolution_high 2.7 _reflns.d_resolution_low 20 _reflns.number_all ? _reflns.number_obs 6950 _reflns.percent_possible_obs 90.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.075 _reflns.pdbx_netI_over_sigmaI 13.1 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.7 _reflns_shell.d_res_low 2.8 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.307 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.3 _reflns_shell.pdbx_redundancy 7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 768 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1X6U _refine.ls_d_res_high 2.7 _refine.ls_d_res_low 20 _refine.pdbx_ls_sigma_F 3 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 6950 _refine.ls_number_reflns_obs 5829 _refine.ls_number_reflns_R_free 707 _refine.ls_percent_reflns_obs 75.3 _refine.ls_R_factor_all 0.239 _refine.ls_R_factor_obs 0.239 _refine.ls_R_factor_R_work 0.239 _refine.ls_R_factor_R_free 0.28 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB ENTRY 1PHW' _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model Isotropic _refine.B_iso_mean 66.35 _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1X6U _refine_analyze.Luzzati_coordinate_error_obs 0.4 _refine_analyze.Luzzati_sigma_a_obs 0.46 _refine_analyze.Luzzati_d_res_low_obs 5.0 _refine_analyze.Luzzati_coordinate_error_free 0.48 _refine_analyze.Luzzati_sigma_a_free 0.5 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2081 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 20 _refine_hist.number_atoms_solvent 25 _refine_hist.number_atoms_total 2126 _refine_hist.d_res_high 2.7 _refine_hist.d_res_low 20 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.01 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d 1.68 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.3 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.19 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1X6U _struct.title ;KDO8P synthase in it's binary complex with the product KDO8P ; _struct.pdbx_descriptor '2-dehydro-3-deoxyphosphooctonate aldolase (E.C.2.5.1.55)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1X6U _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'KDO8P, TRANSFERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ;The biological assembly is a tetramer generated from the dimer in the asymmetric unit by the operations: X,Y,Z -X,-Y,Z -X,Y,-Z X,-Y,-Z Z,X,Y Z,-X,-Y -Z,-X,Y -Z,X,-Y Y,Z,X -Y,Z,-X Y,-Z,-X -Y,-Z,X 1/2+X,1/2+Y,1/2+Z 1/2-X,1/2-Y,1/2+Z 1/2-X,1/2+Y,1/2-Z 1/2+X,1/2-Y,1/2-Z 1/2+Z,1/2+X,1/2+Y 1/2+Z,1/2-X,1/2-Y 1/2-Z,1/2-X,1/2+Y 1/2-Z,1/2+X,1/2-Y 1/2+Y,1/2+Z,1/2+X 1/2-Y,1/2+Z,1/2-X 1/2+Y,1/2-Z,1/2-X 1/2-Y,1/2-Z,1/2+X ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 30 ? GLY A 49 ? SER A 30 GLY A 49 1 ? 20 HELX_P HELX_P2 2 GLY A 73 ? GLY A 89 ? GLY A 73 GLY A 89 1 ? 17 HELX_P HELX_P3 3 GLN A 101 ? VAL A 109 ? GLN A 101 VAL A 109 1 ? 9 HELX_P HELX_P4 4 PRO A 115 ? ALA A 119 ? PRO A 115 ALA A 119 5 ? 5 HELX_P HELX_P5 5 GLN A 121 ? GLY A 132 ? GLN A 121 GLY A 132 1 ? 12 HELX_P HELX_P6 6 SER A 144 ? GLY A 146 ? SER A 144 GLY A 146 5 ? 3 HELX_P HELX_P7 7 GLN A 147 ? GLY A 158 ? GLN A 147 GLY A 158 1 ? 12 HELX_P HELX_P8 8 LEU A 182 ? SER A 191 ? LEU A 182 SER A 191 1 ? 10 HELX_P HELX_P9 9 GLN A 220 ? GLY A 232 ? GLN A 220 GLY A 232 1 ? 13 HELX_P HELX_P10 10 LYS A 259 ? GLY A 276 ? LYS A 259 GLY A 276 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag none _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id ASN _struct_conn.ptnr1_label_seq_id 62 _struct_conn.ptnr1_label_atom_id ND2 _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id DO8 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id O3P _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ASN _struct_conn.ptnr1_auth_seq_id 62 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id DO8 _struct_conn.ptnr2_auth_seq_id 2634 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.029 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 5 ? C ? 2 ? D ? 2 ? E ? 2 ? F ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel B 4 5 ? parallel C 1 2 ? parallel D 1 2 ? parallel E 1 2 ? anti-parallel F 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 6 ? ILE A 8 ? VAL A 6 ILE A 8 A 2 ILE A 11 ? VAL A 13 ? ILE A 11 VAL A 13 B 1 VAL A 20 ? PHE A 22 ? VAL A 20 PHE A 22 B 2 GLY A 235 ? PHE A 237 ? GLY A 235 PHE A 237 B 3 VAL A 196 ? ASP A 199 ? VAL A 196 ASP A 199 B 4 VAL A 163 ? ASP A 167 ? VAL A 163 ASP A 167 B 5 ILE A 135 ? LYS A 139 ? ILE A 135 LYS A 139 C 1 GLY A 24 ? VAL A 27 ? GLY A 24 VAL A 27 C 2 LYS A 55 ? SER A 57 ? LYS A 55 SER A 57 D 1 ILE A 93 ? ASP A 95 ? ILE A 93 ASP A 95 D 2 VAL A 111 ? GLN A 113 ? VAL A 111 GLN A 113 E 1 ALA A 170 ? ASN A 171 ? ALA A 170 ASN A 171 E 2 LEU A 177 ? VAL A 178 ? LEU A 177 VAL A 178 F 1 ALA A 240 ? HIS A 241 ? ALA A 240 HIS A 241 F 2 LEU A 255 ? PRO A 256 ? LEU A 255 PRO A 256 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 8 ? N ILE A 8 O ILE A 11 ? O ILE A 11 B 1 2 N PHE A 22 ? N PHE A 22 O LEU A 236 ? O LEU A 236 B 2 3 O PHE A 237 ? O PHE A 237 N PHE A 198 ? N PHE A 198 B 3 4 O ASP A 199 ? O ASP A 199 N ASP A 167 ? N ASP A 167 B 4 5 O CYS A 166 ? O CYS A 166 N LYS A 139 ? N LYS A 139 C 1 2 N MET A 25 ? N MET A 25 O LYS A 55 ? O LYS A 55 D 1 2 N THR A 94 ? N THR A 94 O VAL A 111 ? O VAL A 111 E 1 2 N ALA A 170 ? N ALA A 170 O VAL A 178 ? O VAL A 178 F 1 2 N HIS A 241 ? N HIS A 241 O LEU A 255 ? O LEU A 255 # _database_PDB_matrix.entry_id 1X6U _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1X6U _atom_sites.fract_transf_matrix[1][1] 0.008437 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008437 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008437 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 GLN 3 3 3 GLN GLN A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 ASN 12 12 12 ASN ASN A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 ASN 15 15 15 ASN ASN A . n A 1 16 ASP 16 16 16 ASP ASP A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 PHE 22 22 22 PHE PHE A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 MET 25 25 25 MET MET A . n A 1 26 ASN 26 26 26 ASN ASN A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 ARG 31 31 31 ARG ARG A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 MET 35 35 35 MET MET A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 CYS 38 38 38 CYS CYS A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 HIS 40 40 40 HIS HIS A . n A 1 41 TYR 41 41 41 TYR TYR A . n A 1 42 VAL 42 42 42 VAL VAL A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 GLN 46 46 46 GLN GLN A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 PRO 51 51 51 PRO PRO A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 PHE 54 54 54 PHE PHE A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 PHE 58 58 58 PHE PHE A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 ASN 62 62 62 ASN ASN A . n A 1 63 ARG 63 63 63 ARG ARG A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 HIS 67 67 67 HIS HIS A . n A 1 68 SER 68 68 68 SER SER A . n A 1 69 TYR 69 69 69 TYR TYR A . n A 1 70 ARG 70 70 70 ARG ARG A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 PRO 72 72 72 PRO PRO A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 GLY 77 77 77 GLY GLY A . n A 1 78 MET 78 78 78 MET MET A . n A 1 79 LYS 79 79 79 LYS LYS A . n A 1 80 ILE 80 80 80 ILE ILE A . n A 1 81 PHE 81 81 81 PHE PHE A . n A 1 82 GLN 82 82 82 GLN GLN A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 GLN 86 86 86 GLN GLN A . n A 1 87 THR 87 87 87 THR THR A . n A 1 88 PHE 88 88 88 PHE PHE A . n A 1 89 GLY 89 89 89 GLY GLY A . n A 1 90 VAL 90 90 90 VAL VAL A . n A 1 91 LYS 91 91 91 LYS LYS A . n A 1 92 ILE 92 92 92 ILE ILE A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 THR 94 94 94 THR THR A . n A 1 95 ASP 95 95 95 ASP ASP A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 HIS 97 97 97 HIS HIS A . n A 1 98 GLU 98 98 98 GLU GLU A . n A 1 99 PRO 99 99 99 PRO PRO A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 GLN 101 101 101 GLN GLN A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 GLN 103 103 103 GLN GLN A . n A 1 104 PRO 104 104 104 PRO PRO A . n A 1 105 VAL 105 105 105 VAL VAL A . n A 1 106 ALA 106 106 106 ALA ALA A . n A 1 107 ASP 107 107 107 ASP ASP A . n A 1 108 VAL 108 108 108 VAL VAL A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 ASP 110 110 110 ASP ASP A . n A 1 111 VAL 111 111 111 VAL VAL A . n A 1 112 ILE 112 112 112 ILE ILE A . n A 1 113 GLN 113 113 113 GLN GLN A . n A 1 114 LEU 114 114 114 LEU LEU A . n A 1 115 PRO 115 115 115 PRO PRO A . n A 1 116 ALA 116 116 116 ALA ALA A . n A 1 117 PHE 117 117 117 PHE PHE A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 ALA 119 119 119 ALA ALA A . n A 1 120 ARG 120 120 120 ARG ARG A . n A 1 121 GLN 121 121 121 GLN GLN A . n A 1 122 THR 122 122 122 THR THR A . n A 1 123 ASP 123 123 123 ASP ASP A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 GLU 126 126 126 GLU GLU A . n A 1 127 ALA 127 127 127 ALA ALA A . n A 1 128 MET 128 128 128 MET MET A . n A 1 129 ALA 129 129 129 ALA ALA A . n A 1 130 LYS 130 130 130 LYS LYS A . n A 1 131 THR 131 131 131 THR THR A . n A 1 132 GLY 132 132 132 GLY GLY A . n A 1 133 ALA 133 133 133 ALA ALA A . n A 1 134 VAL 134 134 134 VAL VAL A . n A 1 135 ILE 135 135 135 ILE ILE A . n A 1 136 ASN 136 136 136 ASN ASN A . n A 1 137 VAL 137 137 137 VAL VAL A . n A 1 138 LYS 138 138 138 LYS LYS A . n A 1 139 LYS 139 139 139 LYS LYS A . n A 1 140 PRO 140 140 140 PRO PRO A . n A 1 141 GLN 141 141 141 GLN GLN A . n A 1 142 PHE 142 142 142 PHE PHE A . n A 1 143 VAL 143 143 143 VAL VAL A . n A 1 144 SER 144 144 144 SER SER A . n A 1 145 PRO 145 145 145 PRO PRO A . n A 1 146 GLY 146 146 146 GLY GLY A . n A 1 147 GLN 147 147 147 GLN GLN A . n A 1 148 MET 148 148 148 MET MET A . n A 1 149 GLY 149 149 149 GLY GLY A . n A 1 150 ASN 150 150 150 ASN ASN A . n A 1 151 ILE 151 151 151 ILE ILE A . n A 1 152 VAL 152 152 152 VAL VAL A . n A 1 153 ASP 153 153 153 ASP ASP A . n A 1 154 LYS 154 154 154 LYS LYS A . n A 1 155 PHE 155 155 155 PHE PHE A . n A 1 156 LYS 156 156 156 LYS LYS A . n A 1 157 GLU 157 157 157 GLU GLU A . n A 1 158 GLY 158 158 158 GLY GLY A . n A 1 159 GLY 159 159 159 GLY GLY A . n A 1 160 ASN 160 160 160 ASN ASN A . n A 1 161 GLU 161 161 161 GLU GLU A . n A 1 162 LYS 162 162 162 LYS LYS A . n A 1 163 VAL 163 163 163 VAL VAL A . n A 1 164 ILE 164 164 164 ILE ILE A . n A 1 165 LEU 165 165 165 LEU LEU A . n A 1 166 CYS 166 166 166 CYS CYS A . n A 1 167 ASP 167 167 167 ASP ASP A . n A 1 168 ARG 168 168 168 ARG ARG A . n A 1 169 GLY 169 169 169 GLY GLY A . n A 1 170 ALA 170 170 170 ALA ALA A . n A 1 171 ASN 171 171 171 ASN ASN A . n A 1 172 PHE 172 172 172 PHE PHE A . n A 1 173 GLY 173 173 173 GLY GLY A . n A 1 174 TYR 174 174 174 TYR TYR A . n A 1 175 ASP 175 175 175 ASP ASP A . n A 1 176 ASN 176 176 176 ASN ASN A . n A 1 177 LEU 177 177 177 LEU LEU A . n A 1 178 VAL 178 178 178 VAL VAL A . n A 1 179 VAL 179 179 179 VAL VAL A . n A 1 180 ASP 180 180 180 ASP ASP A . n A 1 181 MET 181 181 181 MET MET A . n A 1 182 LEU 182 182 182 LEU LEU A . n A 1 183 GLY 183 183 183 GLY GLY A . n A 1 184 PHE 184 184 184 PHE PHE A . n A 1 185 SER 185 185 185 SER SER A . n A 1 186 ILE 186 186 186 ILE ILE A . n A 1 187 MET 187 187 187 MET MET A . n A 1 188 LYS 188 188 188 LYS LYS A . n A 1 189 LYS 189 189 189 LYS LYS A . n A 1 190 VAL 190 190 190 VAL VAL A . n A 1 191 SER 191 191 191 SER SER A . n A 1 192 GLY 192 192 192 GLY GLY A . n A 1 193 ASN 193 193 193 ASN ASN A . n A 1 194 SER 194 194 194 SER SER A . n A 1 195 PRO 195 195 195 PRO PRO A . n A 1 196 VAL 196 196 196 VAL VAL A . n A 1 197 ILE 197 197 197 ILE ILE A . n A 1 198 PHE 198 198 198 PHE PHE A . n A 1 199 ASP 199 199 199 ASP ASP A . n A 1 200 VAL 200 200 200 VAL VAL A . n A 1 201 THR 201 201 201 THR THR A . n A 1 202 HIS 202 202 202 HIS HIS A . n A 1 203 ALA 203 203 203 ALA ALA A . n A 1 204 LEU 204 204 204 LEU LEU A . n A 1 205 GLN 205 205 205 GLN GLN A . n A 1 206 CYS 206 206 ? ? ? A . n A 1 207 ARG 207 207 ? ? ? A . n A 1 208 ASP 208 208 ? ? ? A . n A 1 209 PRO 209 209 ? ? ? A . n A 1 210 PHE 210 210 ? ? ? A . n A 1 211 GLY 211 211 ? ? ? A . n A 1 212 ALA 212 212 ? ? ? A . n A 1 213 ALA 213 213 ? ? ? A . n A 1 214 SER 214 214 ? ? ? A . n A 1 215 GLY 215 215 ? ? ? A . n A 1 216 GLY 216 216 ? ? ? A . n A 1 217 ARG 217 217 ? ? ? A . n A 1 218 ARG 218 218 218 ARG ARG A . n A 1 219 ALA 219 219 219 ALA ALA A . n A 1 220 GLN 220 220 220 GLN GLN A . n A 1 221 VAL 221 221 221 VAL VAL A . n A 1 222 ALA 222 222 222 ALA ALA A . n A 1 223 GLU 223 223 223 GLU GLU A . n A 1 224 LEU 224 224 224 LEU LEU A . n A 1 225 ALA 225 225 225 ALA ALA A . n A 1 226 ARG 226 226 226 ARG ARG A . n A 1 227 ALA 227 227 227 ALA ALA A . n A 1 228 GLY 228 228 228 GLY GLY A . n A 1 229 MET 229 229 229 MET MET A . n A 1 230 ALA 230 230 230 ALA ALA A . n A 1 231 VAL 231 231 231 VAL VAL A . n A 1 232 GLY 232 232 232 GLY GLY A . n A 1 233 LEU 233 233 233 LEU LEU A . n A 1 234 ALA 234 234 234 ALA ALA A . n A 1 235 GLY 235 235 235 GLY GLY A . n A 1 236 LEU 236 236 236 LEU LEU A . n A 1 237 PHE 237 237 237 PHE PHE A . n A 1 238 ILE 238 238 238 ILE ILE A . n A 1 239 GLU 239 239 239 GLU GLU A . n A 1 240 ALA 240 240 240 ALA ALA A . n A 1 241 HIS 241 241 241 HIS HIS A . n A 1 242 PRO 242 242 242 PRO PRO A . n A 1 243 ASP 243 243 243 ASP ASP A . n A 1 244 PRO 244 244 244 PRO PRO A . n A 1 245 GLU 245 245 245 GLU GLU A . n A 1 246 HIS 246 246 246 HIS HIS A . n A 1 247 ALA 247 247 247 ALA ALA A . n A 1 248 LYS 248 248 248 LYS LYS A . n A 1 249 CYS 249 249 249 CYS CYS A . n A 1 250 ASP 250 250 250 ASP ASP A . n A 1 251 GLY 251 251 251 GLY GLY A . n A 1 252 PRO 252 252 252 PRO PRO A . n A 1 253 SER 253 253 253 SER SER A . n A 1 254 ALA 254 254 254 ALA ALA A . n A 1 255 LEU 255 255 255 LEU LEU A . n A 1 256 PRO 256 256 256 PRO PRO A . n A 1 257 LEU 257 257 257 LEU LEU A . n A 1 258 ALA 258 258 258 ALA ALA A . n A 1 259 LYS 259 259 259 LYS LYS A . n A 1 260 LEU 260 260 260 LEU LEU A . n A 1 261 GLU 261 261 261 GLU GLU A . n A 1 262 PRO 262 262 262 PRO PRO A . n A 1 263 PHE 263 263 263 PHE PHE A . n A 1 264 LEU 264 264 264 LEU LEU A . n A 1 265 LYS 265 265 265 LYS LYS A . n A 1 266 GLN 266 266 266 GLN GLN A . n A 1 267 MET 267 267 267 MET MET A . n A 1 268 LYS 268 268 268 LYS LYS A . n A 1 269 ALA 269 269 269 ALA ALA A . n A 1 270 ILE 270 270 270 ILE ILE A . n A 1 271 ASP 271 271 271 ASP ASP A . n A 1 272 ASP 272 272 272 ASP ASP A . n A 1 273 LEU 273 273 273 LEU LEU A . n A 1 274 VAL 274 274 274 VAL VAL A . n A 1 275 LYS 275 275 275 LYS LYS A . n A 1 276 GLY 276 276 276 GLY GLY A . n A 1 277 PHE 277 277 277 PHE PHE A . n A 1 278 GLU 278 278 278 GLU GLU A . n A 1 279 GLU 279 279 279 GLU GLU A . n A 1 280 LEU 280 280 280 LEU LEU A . n A 1 281 ASP 281 281 281 ASP ASP A . n A 1 282 THR 282 282 282 THR THR A . n A 1 283 SER 283 283 283 SER SER A . n A 1 284 LYS 284 284 284 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DO8 1 2634 2634 DO8 KDO A . C 3 HOH 1 2635 1 HOH TIP A B C 3 HOH 2 2636 2 HOH TIP A B C 3 HOH 3 2637 3 HOH TIP A B C 3 HOH 4 2638 4 HOH TIP A B C 3 HOH 5 2639 5 HOH TIP A B C 3 HOH 6 2640 6 HOH TIP A B C 3 HOH 7 2641 7 HOH TIP A B C 3 HOH 8 2642 8 HOH TIP A B C 3 HOH 9 2643 9 HOH TIP A B C 3 HOH 10 2644 10 HOH TIP A B C 3 HOH 11 2645 11 HOH TIP A B C 3 HOH 12 2646 12 HOH TIP A B C 3 HOH 13 2647 13 HOH TIP A B C 3 HOH 14 2648 14 HOH TIP A B C 3 HOH 15 2649 15 HOH TIP A B C 3 HOH 16 2650 16 HOH TIP A B C 3 HOH 17 2651 17 HOH TIP A B C 3 HOH 18 2652 18 HOH TIP A B C 3 HOH 19 2653 19 HOH TIP A B C 3 HOH 20 2654 20 HOH TIP A B C 3 HOH 21 2655 21 HOH TIP A B C 3 HOH 22 2656 22 HOH TIP A B C 3 HOH 23 2657 23 HOH TIP A B C 3 HOH 24 2658 24 HOH TIP A B C 3 HOH 25 2659 25 HOH TIP A B # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 16030 ? 1 MORE -123 ? 1 'SSA (A^2)' 38160 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_556 -x,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 118.5300000000 4 'crystal symmetry operation' 4_556 x,-y,-z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 118.5300000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-07-26 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Atomic model' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' pdbx_entity_nonpoly 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site 7 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.auth_atom_id' 2 4 'Structure model' '_atom_site.label_atom_id' 3 4 'Structure model' '_chem_comp.mon_nstd_flag' 4 4 'Structure model' '_chem_comp.name' 5 4 'Structure model' '_chem_comp.type' 6 4 'Structure model' '_entity.pdbx_description' 7 4 'Structure model' '_pdbx_entity_nonpoly.name' 8 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 CNS refinement . ? 3 CNS phasing . ? 4 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 N _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 GLY _pdbx_validate_rmsd_angle.auth_seq_id_1 251 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 GLY _pdbx_validate_rmsd_angle.auth_seq_id_2 251 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 C _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 GLY _pdbx_validate_rmsd_angle.auth_seq_id_3 251 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 96.46 _pdbx_validate_rmsd_angle.angle_target_value 113.10 _pdbx_validate_rmsd_angle.angle_deviation -16.64 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 22 ? ? -106.90 59.24 2 1 ASN A 26 ? ? -72.76 -75.73 3 1 PHE A 54 ? ? -37.05 145.93 4 1 SER A 65 ? ? 70.56 134.25 5 1 THR A 131 ? ? -29.36 -42.26 6 1 MET A 181 ? ? -46.88 -18.29 7 1 GLU A 245 ? ? -46.04 -78.41 8 1 CYS A 249 ? ? -150.14 -124.89 9 1 PRO A 252 ? ? -93.01 -149.24 10 1 LEU A 260 ? ? -48.93 -70.39 11 1 LYS A 275 ? ? -58.47 -7.88 12 1 GLU A 279 ? ? -35.33 128.07 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A CYS 206 ? A CYS 206 2 1 Y 1 A ARG 207 ? A ARG 207 3 1 Y 1 A ASP 208 ? A ASP 208 4 1 Y 1 A PRO 209 ? A PRO 209 5 1 Y 1 A PHE 210 ? A PHE 210 6 1 Y 1 A GLY 211 ? A GLY 211 7 1 Y 1 A ALA 212 ? A ALA 212 8 1 Y 1 A ALA 213 ? A ALA 213 9 1 Y 1 A SER 214 ? A SER 214 10 1 Y 1 A GLY 215 ? A GLY 215 11 1 Y 1 A GLY 216 ? A GLY 216 12 1 Y 1 A ARG 217 ? A ARG 217 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '3-deoxy-8-O-phosphono-alpha-D-manno-oct-2-ulopyranosonic acid' DO8 3 water HOH #