HEADER BLOOD CLOTTING,HYDROLASE 13-AUG-04 1X7A TITLE PORCINE FACTOR IXA COMPLEXED TO 1-{3-[AMINO(IMINO) TITLE 2 METHYL]PHENYL}-N-[4-(1H-BENZIMIDAZOL-1-YL)-2-FLUOROPHENYL]- TITLE 3 3-(TRIFLUOROMETHYL)-1H-PYRAZOLE-5-CARBOXAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAGULATION FACTOR IXA; COMPND 3 CHAIN: C; COMPND 4 FRAGMENT: HEAVY CHAIN, PROTEINASE; COMPND 5 SYNONYM: CHRISTMAS FACTOR; COMPND 6 EC: 3.4.21.22; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: COAGULATION FACTOR IX, LIGHT CHAIN; COMPND 9 CHAIN: L; COMPND 10 FRAGMENT: LIGHT CHAIN; COMPND 11 SYNONYM: MATURE PORCINE FACTOR IX SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 7 ORGANISM_COMMON: PIG; SOURCE 8 ORGANISM_TAXID: 9823 KEYWDS INHIBITION; X-RAY STRUCTURE, BLOOD CLOTTING,HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.S.ALEXANDER,A.M.SMALLWOOD,J.M.SMALLHEER,J.WANG,S.WANG, AUTHOR 2 S.NAKAJIMA,K.A.ROSSI,F.BARBERA,D.BURDICK,J.M.LUETTGEN REVDAT 3 24-FEB-09 1X7A 1 VERSN REVDAT 2 13-DEC-05 1X7A 1 JRNL REVDAT 1 16-AUG-05 1X7A 0 JRNL AUTH J.M.SMALLHEER,R.S.ALEXANDER,J.WANG,S.WANG, JRNL AUTH 2 S.NAKAJIMA,K.A.ROSSI,A.SMALLWOOD,F.BARBERA, JRNL AUTH 3 D.BURDICK,J.M.LUETTGEN,R.M.KNABB,R.R.WEXLER, JRNL AUTH 4 P.K.JADHAV JRNL TITL SAR AND FACTOR IXA CRYSTAL STRUCTURE OF A DUAL JRNL TITL 2 INHIBITOR OF FACTORS IXA AND XA JRNL REF BIOORG.MED.CHEM.LETT. V. 14 5263 2004 JRNL REFN ISSN 0960-894X JRNL PMID 15454208 JRNL DOI 10.1016/J.BMCL.2004.08.034 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 7964 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NONE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3149 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 2.90 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1X7A COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-AUG-04. REMARK 100 THE RCSB ID CODE IS RCSB030028. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 5ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7964 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 8.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 250 MM NA ACETATE, 14% PEG 6000, PH REMARK 280 8.5, TEMPERATURE 293K, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.65000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 64.50000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 64.50000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.82500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 64.50000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 64.50000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.47500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 64.50000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.50000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 17.82500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 64.50000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.50000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.47500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 35.65000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 142.60000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR L 1 REMARK 465 ASN L 2 REMARK 465 SER L 3 REMARK 465 GLY L 4 REMARK 465 LYS L 5 REMARK 465 LEU L 6 REMARK 465 GLU L 7 REMARK 465 GLU L 8 REMARK 465 PHE L 9 REMARK 465 VAL L 10 REMARK 465 ARG L 11 REMARK 465 GLY L 12 REMARK 465 ASN L 13 REMARK 465 LEU L 14 REMARK 465 GLU L 15 REMARK 465 ARG L 16 REMARK 465 GLU L 17 REMARK 465 CYS L 18 REMARK 465 ILE L 19 REMARK 465 GLU L 20 REMARK 465 GLU L 21 REMARK 465 LYS L 22 REMARK 465 CYS L 23 REMARK 465 SER L 24 REMARK 465 PHE L 25 REMARK 465 GLU L 26 REMARK 465 GLU L 27 REMARK 465 ALA L 28 REMARK 465 ARG L 29 REMARK 465 GLU L 30 REMARK 465 VAL L 31 REMARK 465 PHE L 32 REMARK 465 GLU L 33 REMARK 465 ASN L 34 REMARK 465 THR L 35 REMARK 465 GLU L 36 REMARK 465 LYS L 37 REMARK 465 THR L 38 REMARK 465 ASN L 39 REMARK 465 GLU L 40 REMARK 465 PHE L 41 REMARK 465 TRP L 42 REMARK 465 LYS L 43 REMARK 465 GLN L 44 REMARK 465 TYR L 45 REMARK 465 VAL L 46 REMARK 465 ASP L 47 REMARK 465 GLY L 48 REMARK 465 ASP L 49 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR C 245 O REMARK 470 ARG L 146 O REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 SER L 138 REMARK 475 HIS L 139 REMARK 475 SER L 140 REMARK 475 PRO L 141 REMARK 475 THR L 142 REMARK 475 THR L 143 REMARK 475 LEU L 144 REMARK 475 THR L 145 REMARK 475 ARG L 146 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU C 77 CG CD OE1 OE2 REMARK 480 ARG C 148 CG CD NE CZ NH1 NH2 REMARK 480 ARG C 233 CG CD NE CZ NH1 NH2 REMARK 480 GLU C 240 CG CD OE1 OE2 REMARK 480 LYS C 243 CG CD CE NZ REMARK 480 THR C 245 C CB OG1 CG2 REMARK 480 GLU L 52 CG CD OE1 OE2 REMARK 480 LYS L 100 CG CD CE NZ REMARK 480 LYS L 106 CG CD CE NZ REMARK 480 VAL L 137 C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER C 190 N4 187 C 298 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS L 56 CB CYS L 56 SG -0.106 REMARK 500 CYS L 95 CB CYS L 95 SG -0.101 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL C 52 CG1 - CB - CG2 ANGL. DEV. = 10.8 DEGREES REMARK 500 VAL C 66 CG1 - CB - CG2 ANGL. DEV. = -13.3 DEGREES REMARK 500 LEU C 112 CB - CG - CD1 ANGL. DEV. = -10.9 DEGREES REMARK 500 CYS C 122 CA - CB - SG ANGL. DEV. = 7.8 DEGREES REMARK 500 LEU C 131 CB - CG - CD1 ANGL. DEV. = -11.3 DEGREES REMARK 500 VAL C 138 CG1 - CB - CG2 ANGL. DEV. = 10.0 DEGREES REMARK 500 VAL C 144 CG1 - CB - CG2 ANGL. DEV. = -9.8 DEGREES REMARK 500 ASN C 147 CA - CB - CG ANGL. DEV. = -18.3 DEGREES REMARK 500 VAL C 160 CG1 - CB - CG2 ANGL. DEV. = 10.3 DEGREES REMARK 500 CYS L 51 CA - CB - SG ANGL. DEV. = -13.8 DEGREES REMARK 500 LEU L 61 CB - CG - CD1 ANGL. DEV. = -10.3 DEGREES REMARK 500 CYS L 71 CA - CB - SG ANGL. DEV. = -20.6 DEGREES REMARK 500 VAL L 75 CG1 - CB - CG2 ANGL. DEV. = -14.6 DEGREES REMARK 500 CYS L 99 CA - CB - SG ANGL. DEV. = -11.3 DEGREES REMARK 500 ASP L 120 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP L 120 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS C 36 86.52 -31.19 REMARK 500 ILE C 38 -27.13 140.88 REMARK 500 ASP C 39 119.93 76.49 REMARK 500 ALA C 40 94.27 60.36 REMARK 500 PHE C 41 -31.19 -138.73 REMARK 500 ILE C 46 93.29 -57.03 REMARK 500 ASN C 48 163.98 164.13 REMARK 500 HIS C 57 38.72 -67.91 REMARK 500 ALA C 68 -115.38 -69.31 REMARK 500 TYR C 71 -67.74 -127.10 REMARK 500 GLU C 74 12.31 -59.77 REMARK 500 PRO C 78 -14.98 -41.50 REMARK 500 HIS C 92 18.19 -65.07 REMARK 500 SER C 93 54.88 -160.18 REMARK 500 TYR C 94 -80.32 -67.15 REMARK 500 ALA C 95A 55.52 -95.93 REMARK 500 THR C 95B -5.14 70.77 REMARK 500 ASN C 97 89.24 28.49 REMARK 500 SER C 100 -72.09 -88.31 REMARK 500 HIS C 101 54.75 -90.67 REMARK 500 ASP C 102 81.91 -63.08 REMARK 500 ALA C 104 152.98 179.28 REMARK 500 ASP C 125 175.70 -46.90 REMARK 500 LYS C 132 48.61 -92.11 REMARK 500 ARG C 143 139.39 -39.52 REMARK 500 ARG C 148 91.78 61.84 REMARK 500 ARG C 150 123.36 70.18 REMARK 500 LEU C 155 122.23 -29.19 REMARK 500 TYR C 177 -158.33 -78.89 REMARK 500 SER C 190 -151.54 -71.93 REMARK 500 CYS C 191 167.04 176.06 REMARK 500 GLU C 204 70.40 65.00 REMARK 500 THR C 206 103.60 -51.17 REMARK 500 SER C 214 -80.81 -111.21 REMARK 500 TRP C 215 -154.82 -138.95 REMARK 500 GLU C 217 83.82 -48.55 REMARK 500 GLU C 219 -173.35 72.81 REMARK 500 LYS C 222 115.22 -39.87 REMARK 500 PRO L 53 163.85 -40.81 REMARK 500 ILE L 66 -86.55 -53.63 REMARK 500 SER L 68 -155.97 -120.18 REMARK 500 TYR L 69 146.74 179.87 REMARK 500 GLN L 74 -172.69 91.34 REMARK 500 LYS L 80 -68.60 57.22 REMARK 500 ASN L 92 0.29 50.53 REMARK 500 GLN L 97 -80.98 -123.90 REMARK 500 THR L 101 -99.83 -95.80 REMARK 500 ASP L 104 -168.23 -53.06 REMARK 500 LEU L 108 93.12 -165.96 REMARK 500 SER L 110 178.27 175.78 REMARK 500 THR L 113 112.74 -26.23 REMARK 500 ALA L 118 -178.66 -59.06 REMARK 500 GLN L 121 39.28 80.84 REMARK 500 LYS L 122 -54.40 -146.65 REMARK 500 HIS L 139 -27.59 -164.86 REMARK 500 THR L 145 91.07 -65.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR C 172 LYS C 173 143.97 REMARK 500 GLU L 52 PRO L 53 -72.92 REMARK 500 TRP L 72 CYS L 73 -148.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR C 71 0.09 SIDE_CHAIN REMARK 500 TYR C 128 0.07 SIDE_CHAIN REMARK 500 PHE C 130 0.09 SIDE_CHAIN REMARK 500 TYR C 137 0.07 SIDE_CHAIN REMARK 500 PHE L 98 0.09 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS C 36 13.20 REMARK 500 ARG C 82 10.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 187 C 298 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PFX RELATED DB: PDB DBREF 1X7A C 16 245 UNP P16293 FA9_PIG 45 271 DBREF 1X7A L 1 146 UNP P16293 FA9_PIG 25 170 SEQADV 1X7A PHE C 174 UNP P16293 VAL 206 SEE REMARK 999 SEQADV 1X7A GLN C 192 UNP P16293 LEU 226 SEE REMARK 999 SEQADV 1X7A ILE C 238 UNP P16293 SEE REMARK 999 SEQADV 1X7A LYS C 239 UNP P16293 SEE REMARK 999 SEQADV 1X7A GLU C 240 UNP P16293 SEE REMARK 999 SEQADV 1X7A LYS C 241 UNP P16293 SEE REMARK 999 SEQADV 1X7A THR C 242 UNP P16293 SEE REMARK 999 SEQADV 1X7A LYS C 243 UNP P16293 SEE REMARK 999 SEQADV 1X7A LEU C 244 UNP P16293 SEE REMARK 999 SEQADV 1X7A THR C 245 UNP P16293 SEE REMARK 999 SEQRES 1 C 235 ILE VAL GLY GLY GLU ASN ALA LYS PRO GLY GLN PHE PRO SEQRES 2 C 235 TRP GLN VAL LEU LEU ASN GLY LYS ILE ASP ALA PHE CYS SEQRES 3 C 235 GLY GLY SER ILE ILE ASN GLU LYS TRP VAL VAL THR ALA SEQRES 4 C 235 ALA HIS CYS ILE GLU PRO GLY VAL LYS ILE THR VAL VAL SEQRES 5 C 235 ALA GLY GLU TYR ASN THR GLU GLU THR GLU PRO THR GLU SEQRES 6 C 235 GLN ARG ARG ASN VAL ILE ARG ALA ILE PRO HIS HIS SER SEQRES 7 C 235 TYR ASN ALA THR VAL ASN LYS TYR SER HIS ASP ILE ALA SEQRES 8 C 235 LEU LEU GLU LEU ASP GLU PRO LEU THR LEU ASN SER TYR SEQRES 9 C 235 VAL THR PRO ILE CYS ILE ALA ASP LYS GLU TYR THR ASN SEQRES 10 C 235 ILE PHE LEU LYS PHE GLY SER GLY TYR VAL SER GLY TRP SEQRES 11 C 235 GLY ARG VAL PHE ASN ARG GLY ARG SER ALA THR ILE LEU SEQRES 12 C 235 GLN TYR LEU LYS VAL PRO LEU VAL ASP ARG ALA THR CYS SEQRES 13 C 235 LEU ARG SER THR LYS PHE THR ILE TYR SER ASN MET PHE SEQRES 14 C 235 CYS ALA GLY PHE HIS GLU GLY GLY LYS ASP SER CYS GLN SEQRES 15 C 235 GLY ASP SER GLY GLY PRO HIS VAL THR GLU VAL GLU GLY SEQRES 16 C 235 THR SER PHE LEU THR GLY ILE ILE SER TRP GLY GLU GLU SEQRES 17 C 235 CYS ALA VAL LYS GLY LYS TYR GLY ILE TYR THR LYS VAL SEQRES 18 C 235 SER ARG TYR VAL ASN TRP ILE LYS GLU LYS THR LYS LEU SEQRES 19 C 235 THR SEQRES 1 L 146 TYR ASN SER GLY LYS LEU GLU GLU PHE VAL ARG GLY ASN SEQRES 2 L 146 LEU GLU ARG GLU CYS ILE GLU GLU LYS CYS SER PHE GLU SEQRES 3 L 146 GLU ALA ARG GLU VAL PHE GLU ASN THR GLU LYS THR ASN SEQRES 4 L 146 GLU PHE TRP LYS GLN TYR VAL ASP GLY ASP GLN CYS GLU SEQRES 5 L 146 PRO ASN PRO CYS LEU ASN GLY GLY LEU CYS LYS ASP ASP SEQRES 6 L 146 ILE ASN SER TYR GLU CYS TRP CYS GLN VAL GLY PHE GLU SEQRES 7 L 146 GLY LYS ASN CYS GLU LEU ASP ALA THR CYS ASN ILE LYS SEQRES 8 L 146 ASN GLY ARG CYS LYS GLN PHE CYS LYS THR GLY ALA ASP SEQRES 9 L 146 SER LYS VAL LEU CYS SER CYS THR THR GLY TYR ARG LEU SEQRES 10 L 146 ALA PRO ASP GLN LYS SER CYS LYS PRO ALA VAL PRO PHE SEQRES 11 L 146 PRO CYS GLY ARG VAL SER VAL SER HIS SER PRO THR THR SEQRES 12 L 146 LEU THR ARG HET 187 C 298 37 HETNAM 187 1-{3-[AMINO(IMINO)METHYL]PHENYL}-N-[4-(1H- HETNAM 2 187 BENZIMIDAZOL-1-YL)-2-FLUOROPHENYL]-3- HETNAM 3 187 (TRIFLUOROMETHYL)-1H-PYRAZOLE-5-CARBOXAMIDE FORMUL 3 187 C25 H17 F4 N7 O HELIX 1 1 ASP C 125 LYS C 132 1 10 HELIX 2 2 ASP C 164 ARG C 170 1 7 HELIX 3 3 LYS C 230 THR C 242 1 13 HELIX 4 4 ILE L 90 ARG L 94 5 5 SHEET 1 A 8 GLU C 20 ASN C 21 0 SHEET 2 A 8 GLN C 156 VAL C 163 -1 O TYR C 157 N GLU C 20 SHEET 3 A 8 MET C 180 ALA C 183 -1 O CYS C 182 N VAL C 163 SHEET 4 A 8 GLY C 226 THR C 229 -1 O TYR C 228 N PHE C 181 SHEET 5 A 8 SER C 207 TRP C 215 -1 N ILE C 212 O THR C 229 SHEET 6 A 8 PRO C 198 GLU C 202 -1 N THR C 201 O PHE C 208 SHEET 7 A 8 SER C 135 GLY C 140 -1 N TYR C 137 O VAL C 200 SHEET 8 A 8 GLN C 156 VAL C 163 -1 O LEU C 158 N VAL C 138 SHEET 1 B 6 THR C 65 VAL C 67 0 SHEET 2 B 6 GLN C 30 ASN C 34 -1 N LEU C 32 O VAL C 67 SHEET 3 B 6 CYS C 42 ASN C 48 -1 O CYS C 42 N LEU C 33 SHEET 4 B 6 TRP C 51 THR C 54 -1 O VAL C 53 N SER C 45 SHEET 5 B 6 ALA C 104 LEU C 108 -1 O LEU C 106 N VAL C 52 SHEET 6 B 6 VAL C 85 PRO C 90 -1 N ARG C 87 O GLU C 107 SHEET 1 C 2 LEU L 61 ASP L 64 0 SHEET 2 C 2 TYR L 69 TRP L 72 -1 O TRP L 72 N LEU L 61 SHEET 1 D 2 PHE L 77 GLU L 78 0 SHEET 2 D 2 LEU L 84 ASP L 85 -1 O LEU L 84 N GLU L 78 SHEET 1 E 2 TYR L 115 LEU L 117 0 SHEET 2 E 2 CYS L 124 PRO L 126 -1 O LYS L 125 N ARG L 116 SSBOND 1 CYS C 42 CYS C 58 1555 1555 2.20 SSBOND 2 CYS C 168 CYS C 182 1555 1555 2.01 SSBOND 3 CYS C 191 CYS C 220 1555 1555 2.08 SSBOND 4 CYS L 51 CYS L 62 1555 1555 2.21 SSBOND 5 CYS L 56 CYS L 71 1555 1555 1.95 SSBOND 6 CYS L 73 CYS L 82 1555 1555 2.19 SSBOND 7 CYS L 88 CYS L 99 1555 1555 2.03 SSBOND 8 CYS L 95 CYS L 109 1555 1555 1.92 SSBOND 9 CYS L 111 CYS L 124 1555 1555 2.29 CISPEP 1 SER L 140 PRO L 141 0 -25.71 SITE 1 AC1 17 ASN C 97 TYR C 99 ARG C 143 PHE C 174 SITE 2 AC1 17 ASP C 189 SER C 190 CYS C 191 GLN C 192 SITE 3 AC1 17 SER C 195 ILE C 213 SER C 214 TRP C 215 SITE 4 AC1 17 GLY C 216 GLU C 217 GLU C 219 CYS C 220 SITE 5 AC1 17 GLY C 226 CRYST1 129.000 129.000 71.300 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007752 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007752 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014025 0.00000