HEADER HYDROLASE 18-AUG-04 1X8I TITLE CRYSTAL STRUCTURE OF THE ZINC CARBAPENEMASE CPHA IN COMPLEX WITH THE TITLE 2 ANTIBIOTIC BIAPENEM COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEROMONAS HYDROPHILA; SOURCE 3 ORGANISM_TAXID: 644; SOURCE 4 GENE: CPHA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)(PLYSS); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PUC20-CPHA KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.GARAU,O.DIDEBERG REVDAT 5 03-APR-24 1X8I 1 REMARK REVDAT 4 10-NOV-21 1X8I 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 1X8I 1 VERSN REVDAT 2 24-FEB-09 1X8I 1 VERSN REVDAT 1 28-DEC-04 1X8I 0 JRNL AUTH G.GARAU,C.BEBRONE,C.ANNE,M.GALLENI,J.M.FRERE,O.DIDEBERG JRNL TITL A METALLO-BETA-LACTAMASE ENZYME IN ACTION: CRYSTAL JRNL TITL 2 STRUCTURES OF THE MONOZINC CARBAPENEMASE CPHA AND ITS JRNL TITL 3 COMPLEX WITH BIAPENEM JRNL REF J.MOL.BIOL. V. 345 785 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 15588826 JRNL DOI 10.1016/J.JMB.2004.10.070 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.GARAU,I.GARCIA-SAEZ,C.BEBRONE,C.ANNE,P.MERCURI,M.GALLENI, REMARK 1 AUTH 2 J.M.FRERE,O.DIDEBERG REMARK 1 TITL UPDATE OF THE STANDARD NUMBERING SCHEME FOR CLASS B REMARK 1 TITL 2 BETA-LACTAMASES REMARK 1 REF ANTIMICROB.AGENTS CHEMOTHER. V. 48 2347 2004 REMARK 1 REFN ISSN 0066-4804 REMARK 1 PMID 15215079 REMARK 1 DOI 10.1128/AAC.48.7.2347-2349.2004 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.CARFI,S.PARES,E.DUEE,M.GALLENI,C.DUEZ,J.M.FRERE,O.DIDEBERG REMARK 1 TITL THE 3-D STRUCTURE OF A ZINC METALLO-BETA-LACTAMASE FROM REMARK 1 TITL 2 BACILLUS CEREUS REVEALS A NEW TYPE OF PROTEIN FOLD REMARK 1 REF EMBO J. V. 14 4914 1995 REMARK 1 REFN ISSN 0261-4189 REMARK 1 PMID 7588620 REMARK 1 REFERENCE 3 REMARK 1 AUTH I.GARCIA-SAEZ,P.S.MERCURI,C.PAPAMICAEL,R.KAHN,J.M.FRERE, REMARK 1 AUTH 2 M.GALLENI,G.M.ROSSOLINI,O.DIDEBERG REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF FEZ-1, A MONOMERIC SUBCLASS REMARK 1 TITL 2 B3 METALLO-BETA-LACTAMASE FROM FLUORIBACTER GORMANII, IN REMARK 1 TITL 3 NATIVE FORM AND IN COMPLEX WITH D-CAPTOPRIL REMARK 1 REF J.MOL.BIOL. V. 325 651 2003 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 12507470 REMARK 1 DOI 10.1016/S0022-2836(02)01271-8 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 19554 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1051 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1429 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1990 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.2160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1754 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 188 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.35000 REMARK 3 B22 (A**2) : -0.28000 REMARK 3 B33 (A**2) : -0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.114 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.370 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1865 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1677 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2537 ; 1.748 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3934 ; 0.950 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 215 ; 6.378 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 284 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1959 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 358 ; 0.016 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 413 ; 0.375 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1854 ; 0.246 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 963 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 142 ; 0.181 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.215 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 55 ; 0.376 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.164 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1107 ; 0.815 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1783 ; 1.461 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 758 ; 2.574 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 746 ; 4.224 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): 1 ; 3.806 ; 2.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 12 ; 4.489 ; 2.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1X8I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000030072. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54179 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20636 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 26.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : 0.12000 REMARK 200 FOR THE DATA SET : 3.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : 0.29000 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: CPHA (N220G) MUTANT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG, AS, PH 6.50, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 280K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.68200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.68200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 21.41800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.75650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 21.41800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.75650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.68200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 21.41800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.75650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.68200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 21.41800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.75650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 306 REMARK 465 SER A 307 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 305 CA C O CB CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 100 C ARG A 102 N 0.144 REMARK 500 LYS A 106 C PRO A 108 N 0.187 REMARK 500 PHE A 205 C PRO A 209 N 0.132 REMARK 500 LYS A 226 C LEU A 231 N 0.139 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 131 O - C - N ANGL. DEV. = -10.4 DEGREES REMARK 500 ASP A 264 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 49 117.48 -160.79 REMARK 500 TYR A 60 -126.36 58.76 REMARK 500 THR A 86 173.70 69.86 REMARK 500 ALA A 195 -105.96 -154.85 REMARK 500 LYS A 224 175.77 178.69 REMARK 500 ASP A 264 -164.69 62.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 BMH A 2 N4 REMARK 620 2 BMH A 2 O32 73.6 REMARK 620 3 ASP A 120 OD2 92.5 161.8 REMARK 620 4 CYS A 221 SG 124.1 96.3 101.2 REMARK 620 5 HIS A 263 NE2 112.1 81.6 93.3 120.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BMH A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1X8G RELATED DB: PDB REMARK 900 THE MONO-ZINC CARBAPENEMASE REMARK 900 RELATED ID: 1X8H RELATED DB: PDB REMARK 900 THE MONO-ZINC CARBAPENEMASE CPHA (N220G MUTANT) SHOWS A ZN(II)- NH2 REMARK 900 ARG COORDINATION DBREF 1X8I A 41 307 UNP P26918 BLAB_AERHY 28 254 SEQADV 1X8I GLY A 220 UNP P26918 ASN 192 ENGINEERED MUTATION SEQRES 1 A 227 ALA GLY MET SER LEU THR GLN VAL SER GLY PRO VAL TYR SEQRES 2 A 227 VAL VAL GLU ASP ASN TYR TYR VAL GLN GLU ASN SER MET SEQRES 3 A 227 VAL TYR PHE GLY ALA LYS GLY VAL THR VAL VAL GLY ALA SEQRES 4 A 227 THR TRP THR PRO ASP THR ALA ARG GLU LEU HIS LYS LEU SEQRES 5 A 227 ILE LYS ARG VAL SER ARG LYS PRO VAL LEU GLU VAL ILE SEQRES 6 A 227 ASN THR ASN TYR HIS THR ASP ARG ALA GLY GLY ASN ALA SEQRES 7 A 227 TYR TRP LYS SER ILE GLY ALA LYS VAL VAL SER THR ARG SEQRES 8 A 227 GLN THR ARG ASP LEU MET LYS SER ASP TRP ALA GLU ILE SEQRES 9 A 227 VAL ALA PHE THR ARG LYS GLY LEU PRO GLU TYR PRO ASP SEQRES 10 A 227 LEU PRO LEU VAL LEU PRO ASN VAL VAL HIS ASP GLY ASP SEQRES 11 A 227 PHE THR LEU GLN GLU GLY LYS VAL ARG ALA PHE TYR ALA SEQRES 12 A 227 GLY PRO ALA HIS THR PRO ASP GLY ILE PHE VAL TYR PHE SEQRES 13 A 227 PRO ASP GLU GLN VAL LEU TYR GLY GLY CYS ILE LEU LYS SEQRES 14 A 227 GLU LYS LEU GLY ASN LEU SER PHE ALA ASP VAL LYS ALA SEQRES 15 A 227 TYR PRO GLN THR LEU GLU ARG LEU LYS ALA MET LYS LEU SEQRES 16 A 227 PRO ILE LYS THR VAL ILE GLY GLY HIS ASP SER PRO LEU SEQRES 17 A 227 HIS GLY PRO GLU LEU ILE ASP HIS TYR GLU ALA LEU ILE SEQRES 18 A 227 LYS ALA ALA PRO GLN SER HET ZN A 401 1 HET SO4 A 4 5 HET SO4 A 5 5 HET SO4 A 6 5 HET SO4 A 7 5 HET SO4 A 8 5 HET SO4 A 9 5 HET BMH A 2 25 HET GOL A 3 6 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM BMH 5H-PYRAZOLO(1,2-A)(1,2,4)TRIAZOL-4-IUM, 6-((2-CARBOXY- HETNAM 2 BMH 6-(1-HYDROXYETHYL)-4-METHYL-7-OXO-1-AZABICYCLO(3.2.0) HETNAM 3 BMH HEPT-2-EN-3-YL)THIO)-6,7-DIHYDRO-, HYDROXIDE, INNER HETNAM 4 BMH SALT, (4R-(4ALPHA,5BETA,6BETA(R*)))- HETNAM GOL GLYCEROL HETSYN BMH BIAPENEM (HYDLYZED) HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 SO4 6(O4 S 2-) FORMUL 9 BMH C15 H22 N4 O5 S FORMUL 10 GOL C3 H8 O3 FORMUL 11 HOH *188(H2 O) HELIX 1 1 THR A 88 SER A 104 1 16 HELIX 2 2 HIS A 118 GLY A 123 1 6 HELIX 3 3 GLY A 124 ILE A 131 1 8 HELIX 4 4 ARG A 140 LEU A 161 1 22 HELIX 5 5 GLY A 220 LEU A 223 5 4 HELIX 6 6 LYS A 240 MET A 252 1 13 HELIX 7 7 PRO A 291 ALA A 304 1 14 SHEET 1 A 7 MET A 43 SER A 49 0 SHEET 2 A 7 VAL A 52 ASP A 57 -1 O VAL A 54 N THR A 46 SHEET 3 A 7 GLU A 69 PHE A 75 -1 O SER A 71 N VAL A 55 SHEET 4 A 7 VAL A 80 VAL A 83 -1 O VAL A 83 N MET A 72 SHEET 5 A 7 VAL A 109 ILE A 113 1 O GLU A 111 N VAL A 82 SHEET 6 A 7 LYS A 135 THR A 139 1 O VAL A 137 N VAL A 112 SHEET 7 A 7 VAL A 174 HIS A 176 1 O HIS A 176 N SER A 138 SHEET 1 B 6 PHE A 180 LEU A 182 0 SHEET 2 B 6 VAL A 187 PHE A 190 -1 O ALA A 189 N PHE A 180 SHEET 3 B 6 PHE A 202 PHE A 205 -1 O PHE A 202 N PHE A 190 SHEET 4 B 6 VAL A 216 TYR A 218 -1 O TYR A 218 N VAL A 203 SHEET 5 B 6 THR A 258 ILE A 260 1 O THR A 258 N LEU A 217 SHEET 6 B 6 LEU A 267 HIS A 289 -1 O HIS A 289 N VAL A 259 LINK N4 BMH A 2 ZN ZN A 401 1555 1555 2.22 LINK O32 BMH A 2 ZN ZN A 401 1555 1555 2.39 LINK OD2 ASP A 120 ZN ZN A 401 1555 1555 2.03 LINK SG CYS A 221 ZN ZN A 401 1555 1555 2.27 LINK NE2 HIS A 263 ZN ZN A 401 1555 1555 2.12 SITE 1 AC1 4 BMH A 2 ASP A 120 CYS A 221 HIS A 263 SITE 1 AC2 2 ARG A 140 HOH A 484 SITE 1 AC3 3 ARG A 143 LYS A 147 LEU A 171 SITE 1 AC4 6 LYS A 97 ARG A 102 LYS A 257 HOH A 438 SITE 2 AC4 6 HOH A 443 HOH A 588 SITE 1 AC5 7 LYS A 129 VAL A 170 LEU A 171 LYS A 302 SITE 2 AC5 7 HOH A 445 HOH A 498 HOH A 509 SITE 1 AC6 5 SER A 104 ARG A 105 LYS A 106 LEU A 267 SITE 2 AC6 5 HOH A 416 SITE 1 AC7 3 HIS A 176 ASP A 177 GLY A 178 SITE 1 AC8 13 VAL A 67 THR A 119 ASP A 120 PHE A 156 SITE 2 AC8 13 THR A 157 HIS A 196 CYS A 221 LYS A 224 SITE 3 AC8 13 ASN A 233 HIS A 263 ZN A 401 HOH A 403 SITE 4 AC8 13 HOH A 544 SITE 1 AC9 5 LYS A 250 PRO A 291 ASP A 295 HOH A 422 SITE 2 AC9 5 HOH A 523 CRYST1 42.836 101.513 117.364 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023345 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009851 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008521 0.00000