HEADER SIGNALING PROTEIN 24-AUG-04 1XA1 TITLE CRYSTAL STRUCTURE OF THE SENSOR DOMAIN OF BLAR1 FROM STAPHYLOCOCCUS TITLE 2 AUREUS IN ITS APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: REGULATORY PROTEIN BLAR1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN (RESIDUES 331-585); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: BLAR1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET41B(+) KEYWDS BETA-LACTAMASE, BLAR1, SENSOR DOMAIN, STAPHYLOCOCCUS AUREUS, KEYWDS 2 ANTIBIOTIC RESISTANCE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.S.WILKE,T.L.HILLS,H.Z.ZHANG,H.F.CHAMBERS,N.C.STRYNADKA REVDAT 4 23-AUG-23 1XA1 1 REMARK REVDAT 3 24-FEB-09 1XA1 1 VERSN REVDAT 2 14-DEC-04 1XA1 1 JRNL REVDAT 1 07-SEP-04 1XA1 0 JRNL AUTH M.S.WILKE,T.L.HILLS,H.Z.ZHANG,H.F.CHAMBERS,N.C.STRYNADKA JRNL TITL CRYSTAL STRUCTURES OF THE APO AND PENICILLIN-ACYLATED FORMS JRNL TITL 2 OF THE BLAR1 BETA-LACTAM SENSOR OF STAPHYLOCOCCUS AUREUS. JRNL REF J.BIOL.CHEM. V. 279 47278 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15322076 JRNL DOI 10.1074/JBC.M407054200 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 90477 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4770 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4841 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 263 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8107 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 1031 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : -0.30000 REMARK 3 B33 (A**2) : 0.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.10000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.143 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.958 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8385 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 7048 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11265 ; 1.296 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16638 ; 0.767 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 961 ; 5.900 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1121 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9139 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1701 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1771 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 8232 ; 0.240 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 4481 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 778 ; 0.180 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 39 ; 0.258 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 147 ; 0.280 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 62 ; 0.206 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4840 ; 0.753 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7791 ; 1.393 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3545 ; 2.044 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3474 ; 3.335 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1XA1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000030127. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.10000 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 95274 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: BENZYLPENICILLIN-ACYLATED BLAR1 C-TERMINAL DOMAIN, REMARK 200 PDB ENTRY 1XA7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18-23% PEG 3350, 0.2M NAH2PO4, PH 4.7, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 52.44650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 GLN A 2 REMARK 465 SER A 3 REMARK 465 ILE A 4 REMARK 465 THR A 5 REMARK 465 ASP A 6 REMARK 465 TYR A 7 REMARK 465 GLN A 167 REMARK 465 ASN A 168 REMARK 465 GLY A 254 REMARK 465 GLN A 255 REMARK 465 GLY B 1 REMARK 465 GLN B 2 REMARK 465 SER B 3 REMARK 465 ILE B 4 REMARK 465 THR B 5 REMARK 465 ASP B 6 REMARK 465 TYR B 7 REMARK 465 GLY B 254 REMARK 465 GLN B 255 REMARK 465 GLY C 1 REMARK 465 GLN C 2 REMARK 465 SER C 3 REMARK 465 ILE C 4 REMARK 465 HIS C 14 REMARK 465 ASP C 77 REMARK 465 ASN C 85 REMARK 465 ASN C 203 REMARK 465 GLY C 204 REMARK 465 LYS C 205 REMARK 465 GLY C 254 REMARK 465 GLN C 255 REMARK 465 GLY D 1 REMARK 465 GLN D 2 REMARK 465 SER D 3 REMARK 465 ILE D 4 REMARK 465 THR D 5 REMARK 465 ASP D 6 REMARK 465 ASP D 77 REMARK 465 GLU D 78 REMARK 465 ASN D 79 REMARK 465 SER D 83 REMARK 465 GLN D 167 REMARK 465 ASN D 168 REMARK 465 ASN D 253 REMARK 465 GLY D 254 REMARK 465 GLN D 255 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 2166 O HOH D 2185 1.75 REMARK 500 O HOH A 2220 O HOH A 2238 1.82 REMARK 500 O HOH D 2136 O HOH D 2185 1.85 REMARK 500 N ASN A 8 O HOH A 2260 1.91 REMARK 500 O HOH D 2050 O HOH D 2183 2.08 REMARK 500 OD1 ASP B 92 O HOH B 2265 2.09 REMARK 500 N TYR C 206 O HOH C 2205 2.13 REMARK 500 O HOH A 2180 O HOH A 2271 2.18 REMARK 500 OE2 GLU D 147 O HOH D 2172 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 77 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 92 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 220 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 16 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 148 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 220 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP B 230 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP C 220 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP D 220 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP D 230 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 47 72.70 63.78 REMARK 500 ASN A 58 -137.60 47.52 REMARK 500 ASN A 95 57.65 -91.38 REMARK 500 LYS A 142 -102.87 -109.08 REMARK 500 SER A 143 58.97 -96.54 REMARK 500 ASP A 148 -133.75 -134.06 REMARK 500 ASN A 208 110.71 -160.02 REMARK 500 ASN B 47 69.09 73.53 REMARK 500 ASN B 58 -136.99 45.88 REMARK 500 HIS B 86 2.69 84.01 REMARK 500 ASN B 95 50.70 -92.16 REMARK 500 LYS B 142 -114.15 -106.92 REMARK 500 ASP B 148 -133.63 -139.99 REMARK 500 ASN B 208 106.15 -169.61 REMARK 500 ASN C 47 64.48 68.27 REMARK 500 ASN C 58 -134.56 43.24 REMARK 500 LYS C 142 -115.41 -103.11 REMARK 500 ASP C 148 -134.54 -138.14 REMARK 500 ASN C 208 97.21 -172.72 REMARK 500 ASN D 47 70.94 62.89 REMARK 500 ASN D 58 -134.26 44.11 REMARK 500 ASP D 148 -129.09 -143.92 REMARK 500 ASN D 207 17.66 -140.59 REMARK 500 ASN D 208 96.75 -170.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 2005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 2006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 2007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP C 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP D 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POP B 2004 DBREF 1XA1 A 1 255 UNP P18357 BLAR_STAAU 331 585 DBREF 1XA1 B 1 255 UNP P18357 BLAR_STAAU 331 585 DBREF 1XA1 C 1 255 UNP P18357 BLAR_STAAU 331 585 DBREF 1XA1 D 1 255 UNP P18357 BLAR_STAAU 331 585 SEQRES 1 A 255 GLY GLN SER ILE THR ASP TYR ASN TYR LYS LYS PRO LEU SEQRES 2 A 255 HIS ASN ASP TYR GLN ILE LEU ASP LYS SER LYS ILE PHE SEQRES 3 A 255 GLY SER ASN SER GLY SER PHE VAL MET TYR SER MET LYS SEQRES 4 A 255 LYS ASP LYS TYR TYR ILE TYR ASN GLU LYS GLU SER ARG SEQRES 5 A 255 LYS ARG TYR SER PRO ASN SER THR TYR LYS ILE TYR LEU SEQRES 6 A 255 ALA MET PHE GLY LEU ASP ARG HIS ILE ILE ASN ASP GLU SEQRES 7 A 255 ASN SER ARG MET SER TRP ASN HIS LYS HIS TYR PRO PHE SEQRES 8 A 255 ASP ALA TRP ASN LYS GLU GLN ASP LEU ASN THR ALA MET SEQRES 9 A 255 GLN ASN SER VAL ASN TRP TYR PHE GLU ARG ILE SER ASP SEQRES 10 A 255 GLN ILE PRO LYS ASN TYR THR ALA THR GLN LEU LYS GLN SEQRES 11 A 255 LEU ASN TYR GLY ASN LYS ASN LEU GLY SER TYR LYS SER SEQRES 12 A 255 TYR TRP MET GLU ASP SER LEU LYS ILE SER ASN LEU GLU SEQRES 13 A 255 GLN VAL ILE VAL PHE LYS ASN MET MET GLU GLN ASN ASN SEQRES 14 A 255 HIS PHE SER LYS LYS ALA LYS ASN GLN LEU SER SER SER SEQRES 15 A 255 LEU LEU ILE LYS LYS ASN GLU LYS TYR GLU LEU TYR GLY SEQRES 16 A 255 LYS THR GLY THR GLY ILE VAL ASN GLY LYS TYR ASN ASN SEQRES 17 A 255 GLY TRP PHE VAL GLY TYR VAL ILE THR ASN HIS ASP LYS SEQRES 18 A 255 TYR TYR PHE ALA THR HIS LEU SER ASP GLY LYS PRO SER SEQRES 19 A 255 GLY LYS ASN ALA GLU LEU ILE SER GLU LYS ILE LEU LYS SEQRES 20 A 255 GLU MET GLY VAL LEU ASN GLY GLN SEQRES 1 B 255 GLY GLN SER ILE THR ASP TYR ASN TYR LYS LYS PRO LEU SEQRES 2 B 255 HIS ASN ASP TYR GLN ILE LEU ASP LYS SER LYS ILE PHE SEQRES 3 B 255 GLY SER ASN SER GLY SER PHE VAL MET TYR SER MET LYS SEQRES 4 B 255 LYS ASP LYS TYR TYR ILE TYR ASN GLU LYS GLU SER ARG SEQRES 5 B 255 LYS ARG TYR SER PRO ASN SER THR TYR LYS ILE TYR LEU SEQRES 6 B 255 ALA MET PHE GLY LEU ASP ARG HIS ILE ILE ASN ASP GLU SEQRES 7 B 255 ASN SER ARG MET SER TRP ASN HIS LYS HIS TYR PRO PHE SEQRES 8 B 255 ASP ALA TRP ASN LYS GLU GLN ASP LEU ASN THR ALA MET SEQRES 9 B 255 GLN ASN SER VAL ASN TRP TYR PHE GLU ARG ILE SER ASP SEQRES 10 B 255 GLN ILE PRO LYS ASN TYR THR ALA THR GLN LEU LYS GLN SEQRES 11 B 255 LEU ASN TYR GLY ASN LYS ASN LEU GLY SER TYR LYS SER SEQRES 12 B 255 TYR TRP MET GLU ASP SER LEU LYS ILE SER ASN LEU GLU SEQRES 13 B 255 GLN VAL ILE VAL PHE LYS ASN MET MET GLU GLN ASN ASN SEQRES 14 B 255 HIS PHE SER LYS LYS ALA LYS ASN GLN LEU SER SER SER SEQRES 15 B 255 LEU LEU ILE LYS LYS ASN GLU LYS TYR GLU LEU TYR GLY SEQRES 16 B 255 LYS THR GLY THR GLY ILE VAL ASN GLY LYS TYR ASN ASN SEQRES 17 B 255 GLY TRP PHE VAL GLY TYR VAL ILE THR ASN HIS ASP LYS SEQRES 18 B 255 TYR TYR PHE ALA THR HIS LEU SER ASP GLY LYS PRO SER SEQRES 19 B 255 GLY LYS ASN ALA GLU LEU ILE SER GLU LYS ILE LEU LYS SEQRES 20 B 255 GLU MET GLY VAL LEU ASN GLY GLN SEQRES 1 C 255 GLY GLN SER ILE THR ASP TYR ASN TYR LYS LYS PRO LEU SEQRES 2 C 255 HIS ASN ASP TYR GLN ILE LEU ASP LYS SER LYS ILE PHE SEQRES 3 C 255 GLY SER ASN SER GLY SER PHE VAL MET TYR SER MET LYS SEQRES 4 C 255 LYS ASP LYS TYR TYR ILE TYR ASN GLU LYS GLU SER ARG SEQRES 5 C 255 LYS ARG TYR SER PRO ASN SER THR TYR LYS ILE TYR LEU SEQRES 6 C 255 ALA MET PHE GLY LEU ASP ARG HIS ILE ILE ASN ASP GLU SEQRES 7 C 255 ASN SER ARG MET SER TRP ASN HIS LYS HIS TYR PRO PHE SEQRES 8 C 255 ASP ALA TRP ASN LYS GLU GLN ASP LEU ASN THR ALA MET SEQRES 9 C 255 GLN ASN SER VAL ASN TRP TYR PHE GLU ARG ILE SER ASP SEQRES 10 C 255 GLN ILE PRO LYS ASN TYR THR ALA THR GLN LEU LYS GLN SEQRES 11 C 255 LEU ASN TYR GLY ASN LYS ASN LEU GLY SER TYR LYS SER SEQRES 12 C 255 TYR TRP MET GLU ASP SER LEU LYS ILE SER ASN LEU GLU SEQRES 13 C 255 GLN VAL ILE VAL PHE LYS ASN MET MET GLU GLN ASN ASN SEQRES 14 C 255 HIS PHE SER LYS LYS ALA LYS ASN GLN LEU SER SER SER SEQRES 15 C 255 LEU LEU ILE LYS LYS ASN GLU LYS TYR GLU LEU TYR GLY SEQRES 16 C 255 LYS THR GLY THR GLY ILE VAL ASN GLY LYS TYR ASN ASN SEQRES 17 C 255 GLY TRP PHE VAL GLY TYR VAL ILE THR ASN HIS ASP LYS SEQRES 18 C 255 TYR TYR PHE ALA THR HIS LEU SER ASP GLY LYS PRO SER SEQRES 19 C 255 GLY LYS ASN ALA GLU LEU ILE SER GLU LYS ILE LEU LYS SEQRES 20 C 255 GLU MET GLY VAL LEU ASN GLY GLN SEQRES 1 D 255 GLY GLN SER ILE THR ASP TYR ASN TYR LYS LYS PRO LEU SEQRES 2 D 255 HIS ASN ASP TYR GLN ILE LEU ASP LYS SER LYS ILE PHE SEQRES 3 D 255 GLY SER ASN SER GLY SER PHE VAL MET TYR SER MET LYS SEQRES 4 D 255 LYS ASP LYS TYR TYR ILE TYR ASN GLU LYS GLU SER ARG SEQRES 5 D 255 LYS ARG TYR SER PRO ASN SER THR TYR LYS ILE TYR LEU SEQRES 6 D 255 ALA MET PHE GLY LEU ASP ARG HIS ILE ILE ASN ASP GLU SEQRES 7 D 255 ASN SER ARG MET SER TRP ASN HIS LYS HIS TYR PRO PHE SEQRES 8 D 255 ASP ALA TRP ASN LYS GLU GLN ASP LEU ASN THR ALA MET SEQRES 9 D 255 GLN ASN SER VAL ASN TRP TYR PHE GLU ARG ILE SER ASP SEQRES 10 D 255 GLN ILE PRO LYS ASN TYR THR ALA THR GLN LEU LYS GLN SEQRES 11 D 255 LEU ASN TYR GLY ASN LYS ASN LEU GLY SER TYR LYS SER SEQRES 12 D 255 TYR TRP MET GLU ASP SER LEU LYS ILE SER ASN LEU GLU SEQRES 13 D 255 GLN VAL ILE VAL PHE LYS ASN MET MET GLU GLN ASN ASN SEQRES 14 D 255 HIS PHE SER LYS LYS ALA LYS ASN GLN LEU SER SER SER SEQRES 15 D 255 LEU LEU ILE LYS LYS ASN GLU LYS TYR GLU LEU TYR GLY SEQRES 16 D 255 LYS THR GLY THR GLY ILE VAL ASN GLY LYS TYR ASN ASN SEQRES 17 D 255 GLY TRP PHE VAL GLY TYR VAL ILE THR ASN HIS ASP LYS SEQRES 18 D 255 TYR TYR PHE ALA THR HIS LEU SER ASP GLY LYS PRO SER SEQRES 19 D 255 GLY LYS ASN ALA GLU LEU ILE SER GLU LYS ILE LEU LYS SEQRES 20 D 255 GLU MET GLY VAL LEU ASN GLY GLN HET PO4 A2005 5 HET PO4 A2006 5 HET POP A2001 9 HET PO4 B2007 5 HET POP B2004 9 HET POP C2002 9 HET POP D2003 9 HETNAM PO4 PHOSPHATE ION HETNAM POP PYROPHOSPHATE 2- FORMUL 5 PO4 3(O4 P 3-) FORMUL 7 POP 4(H2 O7 P2 2-) FORMUL 12 HOH *1031(H2 O) HELIX 1 1 LYS A 22 GLY A 27 1 6 HELIX 2 2 ASN A 47 ARG A 52 1 6 HELIX 3 3 PRO A 57 THR A 60 5 4 HELIX 4 4 TYR A 61 ARG A 72 1 12 HELIX 5 5 PHE A 91 ASN A 95 5 5 HELIX 6 6 ASP A 99 SER A 107 1 9 HELIX 7 7 VAL A 108 GLN A 118 1 11 HELIX 8 8 PRO A 120 ASN A 132 1 13 HELIX 9 9 ASN A 154 GLU A 166 1 13 HELIX 10 10 SER A 172 LEU A 183 1 12 HELIX 11 11 SER A 234 MET A 249 1 16 HELIX 12 12 LYS B 22 GLY B 27 1 6 HELIX 13 13 ASN B 47 ARG B 52 1 6 HELIX 14 14 PRO B 57 THR B 60 5 4 HELIX 15 15 TYR B 61 ARG B 72 1 12 HELIX 16 16 PHE B 91 ASN B 95 5 5 HELIX 17 17 ASP B 99 ASN B 106 1 8 HELIX 18 18 VAL B 108 ASP B 117 1 10 HELIX 19 19 PRO B 120 ASN B 132 1 13 HELIX 20 20 ASN B 154 GLN B 167 1 14 HELIX 21 21 SER B 172 LEU B 183 1 12 HELIX 22 22 SER B 234 MET B 249 1 16 HELIX 23 23 LYS C 22 GLY C 27 1 6 HELIX 24 24 ASN C 47 ARG C 52 1 6 HELIX 25 25 PRO C 57 THR C 60 5 4 HELIX 26 26 TYR C 61 ARG C 72 1 12 HELIX 27 27 PHE C 91 ASN C 95 5 5 HELIX 28 28 ASP C 99 ASN C 106 1 8 HELIX 29 29 VAL C 108 GLN C 118 1 11 HELIX 30 30 PRO C 120 ASN C 132 1 13 HELIX 31 31 ASN C 154 GLN C 167 1 14 HELIX 32 32 SER C 172 LEU C 183 1 12 HELIX 33 33 SER C 234 MET C 249 1 16 HELIX 34 34 LYS D 22 GLY D 27 1 6 HELIX 35 35 ASN D 47 ARG D 52 1 6 HELIX 36 36 PRO D 57 THR D 60 5 4 HELIX 37 37 TYR D 61 ARG D 72 1 12 HELIX 38 38 PHE D 91 ASN D 95 5 5 HELIX 39 39 ASP D 99 ASN D 106 1 8 HELIX 40 40 VAL D 108 ASP D 117 1 10 HELIX 41 41 PRO D 120 ASN D 132 1 13 HELIX 42 42 ASN D 154 GLU D 166 1 13 HELIX 43 43 SER D 172 LEU D 183 1 12 HELIX 44 44 SER D 234 MET D 249 1 16 SHEET 1 A 7 GLN A 18 LEU A 20 0 SHEET 2 A 7 LYS A 42 TYR A 46 1 O TYR A 43 N GLN A 18 SHEET 3 A 7 SER A 30 SER A 37 -1 N PHE A 33 O TYR A 46 SHEET 4 A 7 LYS A 221 ASP A 230 -1 O TYR A 223 N TYR A 36 SHEET 5 A 7 LYS A 205 THR A 217 -1 N VAL A 215 O TYR A 222 SHEET 6 A 7 TYR A 191 VAL A 202 -1 N GLY A 200 O ASN A 207 SHEET 7 A 7 LEU A 184 LYS A 187 -1 N LYS A 186 O LEU A 193 SHEET 1 B 2 ARG A 54 TYR A 55 0 SHEET 2 B 2 ILE A 152 SER A 153 -1 O ILE A 152 N TYR A 55 SHEET 1 C 7 TYR B 17 LEU B 20 0 SHEET 2 C 7 LYS B 42 TYR B 46 1 O ILE B 45 N LEU B 20 SHEET 3 C 7 SER B 30 SER B 37 -1 N PHE B 33 O TYR B 46 SHEET 4 C 7 LYS B 221 ASP B 230 -1 O TYR B 223 N TYR B 36 SHEET 5 C 7 LYS B 205 THR B 217 -1 N GLY B 209 O LEU B 228 SHEET 6 C 7 TYR B 191 VAL B 202 -1 N TYR B 194 O TYR B 214 SHEET 7 C 7 LEU B 184 LYS B 187 -1 N ILE B 185 O LEU B 193 SHEET 1 D 2 ARG B 54 TYR B 55 0 SHEET 2 D 2 ILE B 152 SER B 153 -1 O ILE B 152 N TYR B 55 SHEET 1 E 7 ASP C 16 LEU C 20 0 SHEET 2 E 7 LYS C 42 TYR C 46 1 O ILE C 45 N LEU C 20 SHEET 3 E 7 SER C 30 SER C 37 -1 N PHE C 33 O TYR C 46 SHEET 4 E 7 LYS C 221 ASP C 230 -1 O SER C 229 N SER C 30 SHEET 5 E 7 ASN C 208 THR C 217 -1 N GLY C 213 O PHE C 224 SHEET 6 E 7 TYR C 191 GLY C 200 -1 N TYR C 194 O TYR C 214 SHEET 7 E 7 LEU C 184 LYS C 187 -1 N ILE C 185 O LEU C 193 SHEET 1 F 2 ARG C 54 TYR C 55 0 SHEET 2 F 2 ILE C 152 SER C 153 -1 O ILE C 152 N TYR C 55 SHEET 1 G 7 GLN D 18 LEU D 20 0 SHEET 2 G 7 LYS D 42 TYR D 46 1 O TYR D 43 N GLN D 18 SHEET 3 G 7 SER D 30 SER D 37 -1 N PHE D 33 O TYR D 46 SHEET 4 G 7 LYS D 221 ASP D 230 -1 O TYR D 223 N TYR D 36 SHEET 5 G 7 LYS D 205 THR D 217 -1 N GLY D 209 O LEU D 228 SHEET 6 G 7 TYR D 191 VAL D 202 -1 N TYR D 194 O TYR D 214 SHEET 7 G 7 LEU D 184 LYS D 187 -1 N ILE D 185 O LEU D 193 SHEET 1 H 2 ARG D 54 TYR D 55 0 SHEET 2 H 2 ILE D 152 SER D 153 -1 O ILE D 152 N TYR D 55 SITE 1 AC1 8 LYS A 87 TYR A 89 GLU A 113 HOH A2178 SITE 2 AC1 8 HOH A2231 HOH A2266 LYS B 87 PO4 B2007 SITE 1 AC2 4 SER A 140 ASP A 148 HOH A2058 HIS B 86 SITE 1 AC3 7 LYS A 87 PO4 A2005 LYS B 87 TYR B 89 SITE 2 AC3 7 GLU B 113 HOH B2049 HOH B2206 SITE 1 AC4 13 ASN A 58 SER A 59 SER A 107 MET A 146 SITE 2 AC4 13 LYS A 196 THR A 197 GLY A 198 THR A 199 SITE 3 AC4 13 HOH A2065 HOH A2088 HOH A2135 HOH A2156 SITE 4 AC4 13 HOH A2302 SITE 1 AC5 14 ASN C 58 SER C 59 SER C 107 MET C 146 SITE 2 AC5 14 LYS C 196 THR C 197 GLY C 198 THR C 199 SITE 3 AC5 14 HOH C2022 HOH C2053 HOH C2063 HOH C2081 SITE 4 AC5 14 HOH C2147 HOH C2152 SITE 1 AC6 13 ASN D 58 SER D 59 SER D 107 MET D 146 SITE 2 AC6 13 LYS D 196 THR D 197 GLY D 198 THR D 199 SITE 3 AC6 13 HOH D2050 HOH D2060 HOH D2122 HOH D2134 SITE 4 AC6 13 HOH D2199 SITE 1 AC7 12 ASN B 58 SER B 59 LYS B 62 SER B 107 SITE 2 AC7 12 MET B 146 LYS B 196 THR B 197 GLY B 198 SITE 3 AC7 12 THR B 199 HOH B2118 HOH B2163 HOH B2217 CRYST1 59.876 104.893 90.273 90.00 107.79 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016701 0.000000 0.005359 0.00000 SCALE2 0.000000 0.009534 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011634 0.00000