HEADER SUGAR BINDING PROTEIN 26-AUG-04 1XAR TITLE CRYSTAL STRUCTURE OF A FRAGMENT OF DC-SIGNR (CONTAINING THE TITLE 2 CARBOHYDRATE RECOGNITION DOMAIN AND TWO REPEATS OF THE NECK). COMPND MOL_ID: 1; COMPND 2 MOLECULE: CD209 ANTIGEN-LIKE PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 216-399; COMPND 5 SYNONYM: DENDRITIC CELL-SPECIFIC ICAM-3-GRABBING NONINTEGRIN 2, DC- COMPND 6 SIGN2, DC-SIGN RELATED PROTEIN, DC-SIGNR, LIVER/LYMPH NODE-SPECIFIC COMPND 7 ICAM-3-GRABBING NONINTEGRIN, L-SIGN; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD209L, CD209L1 KEYWDS DC-SIGNR, C-TYPE LECTIN, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.FEINBERG,Y.GUO,D.A.MITCHELL,K.DRICKAMER,W.I.WEIS REVDAT 5 20-NOV-24 1XAR 1 REMARK LINK REVDAT 4 13-JUL-11 1XAR 1 VERSN REVDAT 3 24-FEB-09 1XAR 1 VERSN REVDAT 2 25-JAN-05 1XAR 1 JRNL REVDAT 1 16-NOV-04 1XAR 0 JRNL AUTH H.FEINBERG,Y.GUO,D.A.MITCHELL,K.DRICKAMER,W.I.WEIS JRNL TITL EXTENDED NECK REGIONS STABILIZE TETRAMERS OF THE RECEPTORS JRNL TITL 2 DC-SIGN AND DC-SIGNR JRNL REF J.BIOL.CHEM. V. 280 1327 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15509576 JRNL DOI 10.1074/JBC.M409925200 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1529759.070 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 20863 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1020 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.39 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3252 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 150 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.022 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2361 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 77 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.17000 REMARK 3 B22 (A**2) : 6.17000 REMARK 3 B33 (A**2) : -12.34000 REMARK 3 B12 (A**2) : 7.19000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : 0.27 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.23 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.720 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.450 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.450 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.100 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.050 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 41.60 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1XAR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-SEP-04. REMARK 100 THE DEPOSITION ID IS D_1000030148. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20863 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 59.727 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05400 REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.37600 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: COMO REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 5MG/ML PROTEIN. REMARK 280 RESERVOIR SOLUTION: 3.75M SODIUM FORMATE, 0.05M TRIS, PH=8.5., REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K, PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.50667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.75333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.75333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 73.50667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -133.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 123.07500 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 71.05738 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 73.50667 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 216 REMARK 465 GLU A 217 REMARK 465 LEU A 218 REMARK 465 PRO A 219 REMARK 465 GLU A 220 REMARK 465 LYS A 221 REMARK 465 SER A 222 REMARK 465 LYS A 223 REMARK 465 LEU A 224 REMARK 465 GLN A 225 REMARK 465 GLU A 226 REMARK 465 ILE A 227 REMARK 465 TYR A 228 REMARK 465 GLN A 229 REMARK 465 GLU A 230 REMARK 465 LEU A 231 REMARK 465 THR A 232 REMARK 465 GLN A 233 REMARK 465 LEU A 234 REMARK 465 LYS A 235 REMARK 465 ALA A 236 REMARK 465 ALA A 237 REMARK 465 VAL A 238 REMARK 465 GLY A 239 REMARK 465 GLU A 240 REMARK 465 LEU A 241 REMARK 465 PRO A 242 REMARK 465 ASP A 243 REMARK 465 GLN A 244 REMARK 465 SER A 245 REMARK 465 LYS A 246 REMARK 465 GLN A 247 REMARK 465 GLN A 248 REMARK 465 GLN A 249 REMARK 465 ILE A 250 REMARK 465 ARG A 397 REMARK 465 ASP A 398 REMARK 465 GLU A 399 REMARK 465 GLY B 216 REMARK 465 GLU B 217 REMARK 465 LEU B 218 REMARK 465 PRO B 219 REMARK 465 GLU B 220 REMARK 465 LYS B 221 REMARK 465 SER B 222 REMARK 465 LYS B 223 REMARK 465 LEU B 224 REMARK 465 GLN B 225 REMARK 465 GLU B 226 REMARK 465 ILE B 227 REMARK 465 TYR B 228 REMARK 465 GLN B 229 REMARK 465 GLU B 230 REMARK 465 LEU B 231 REMARK 465 THR B 232 REMARK 465 GLN B 233 REMARK 465 LEU B 234 REMARK 465 LYS B 235 REMARK 465 ALA B 236 REMARK 465 ALA B 237 REMARK 465 VAL B 238 REMARK 465 GLY B 239 REMARK 465 GLU B 240 REMARK 465 LEU B 241 REMARK 465 PRO B 242 REMARK 465 ASP B 243 REMARK 465 GLN B 244 REMARK 465 SER B 245 REMARK 465 LYS B 246 REMARK 465 GLN B 247 REMARK 465 GLN B 248 REMARK 465 GLN B 249 REMARK 465 ILE B 250 REMARK 465 TYR B 251 REMARK 465 GLN B 252 REMARK 465 ARG B 397 REMARK 465 ASP B 398 REMARK 465 GLU B 399 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 396 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE B 396 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 269 -179.74 -59.26 REMARK 500 ASP A 271 -4.10 82.15 REMARK 500 ALA A 301 -166.96 -129.03 REMARK 500 VAL A 304 123.18 -38.03 REMARK 500 GLU A 336 46.46 -153.46 REMARK 500 SER A 350 0.34 -63.51 REMARK 500 ARG B 266 25.82 -141.03 REMARK 500 PHE B 275 118.99 -161.08 REMARK 500 GLN B 276 55.45 38.92 REMARK 500 VAL B 304 121.19 -37.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 100 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 62 O REMARK 620 2 HOH A 63 O 97.9 REMARK 620 3 ASN A 361 O 81.2 104.8 REMARK 620 4 GLU A 366 O 74.9 88.4 154.1 REMARK 620 5 ASP A 378 OD2 92.3 160.1 93.6 77.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 359 OE2 REMARK 620 2 ASP A 378 O 106.0 REMARK 620 3 ASP A 378 OD1 63.3 73.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 200 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 68 O REMARK 620 2 ASN B 361 O 103.4 REMARK 620 3 GLU B 366 O 89.9 164.4 REMARK 620 4 ASP B 378 OD2 154.5 89.7 81.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 75 O REMARK 620 2 GLU B 359 OE1 101.8 REMARK 620 3 GLU B 366 OE1 84.2 164.7 REMARK 620 4 ASP B 378 O 109.4 89.9 74.8 REMARK 620 5 ASP B 378 OD1 166.2 64.9 109.6 75.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 100 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 201 DBREF 1XAR A 216 399 UNP Q9H2X3 209L1_HUMAN 216 399 DBREF 1XAR B 216 399 UNP Q9H2X3 209L1_HUMAN 216 399 SEQRES 1 A 184 GLY GLU LEU PRO GLU LYS SER LYS LEU GLN GLU ILE TYR SEQRES 2 A 184 GLN GLU LEU THR GLN LEU LYS ALA ALA VAL GLY GLU LEU SEQRES 3 A 184 PRO ASP GLN SER LYS GLN GLN GLN ILE TYR GLN GLU LEU SEQRES 4 A 184 THR ASP LEU LYS THR ALA PHE GLU ARG LEU CYS ARG HIS SEQRES 5 A 184 CYS PRO LYS ASP TRP THR PHE PHE GLN GLY ASN CYS TYR SEQRES 6 A 184 PHE MET SER ASN SER GLN ARG ASN TRP HIS ASP SER VAL SEQRES 7 A 184 THR ALA CYS GLN GLU VAL ARG ALA GLN LEU VAL VAL ILE SEQRES 8 A 184 LYS THR ALA GLU GLU GLN ASN PHE LEU GLN LEU GLN THR SEQRES 9 A 184 SER ARG SER ASN ARG PHE SER TRP MET GLY LEU SER ASP SEQRES 10 A 184 LEU ASN GLN GLU GLY THR TRP GLN TRP VAL ASP GLY SER SEQRES 11 A 184 PRO LEU SER PRO SER PHE GLN ARG TYR TRP ASN SER GLY SEQRES 12 A 184 GLU PRO ASN ASN SER GLY ASN GLU ASP CYS ALA GLU PHE SEQRES 13 A 184 SER GLY SER GLY TRP ASN ASP ASN ARG CYS ASP VAL ASP SEQRES 14 A 184 ASN TYR TRP ILE CYS LYS LYS PRO ALA ALA CYS PHE ARG SEQRES 15 A 184 ASP GLU SEQRES 1 B 184 GLY GLU LEU PRO GLU LYS SER LYS LEU GLN GLU ILE TYR SEQRES 2 B 184 GLN GLU LEU THR GLN LEU LYS ALA ALA VAL GLY GLU LEU SEQRES 3 B 184 PRO ASP GLN SER LYS GLN GLN GLN ILE TYR GLN GLU LEU SEQRES 4 B 184 THR ASP LEU LYS THR ALA PHE GLU ARG LEU CYS ARG HIS SEQRES 5 B 184 CYS PRO LYS ASP TRP THR PHE PHE GLN GLY ASN CYS TYR SEQRES 6 B 184 PHE MET SER ASN SER GLN ARG ASN TRP HIS ASP SER VAL SEQRES 7 B 184 THR ALA CYS GLN GLU VAL ARG ALA GLN LEU VAL VAL ILE SEQRES 8 B 184 LYS THR ALA GLU GLU GLN ASN PHE LEU GLN LEU GLN THR SEQRES 9 B 184 SER ARG SER ASN ARG PHE SER TRP MET GLY LEU SER ASP SEQRES 10 B 184 LEU ASN GLN GLU GLY THR TRP GLN TRP VAL ASP GLY SER SEQRES 11 B 184 PRO LEU SER PRO SER PHE GLN ARG TYR TRP ASN SER GLY SEQRES 12 B 184 GLU PRO ASN ASN SER GLY ASN GLU ASP CYS ALA GLU PHE SEQRES 13 B 184 SER GLY SER GLY TRP ASN ASP ASN ARG CYS ASP VAL ASP SEQRES 14 B 184 ASN TYR TRP ILE CYS LYS LYS PRO ALA ALA CYS PHE ARG SEQRES 15 B 184 ASP GLU HET NA A 100 1 HET NA A 101 1 HET NA B 200 1 HET NA B 201 1 HETNAM NA SODIUM ION FORMUL 3 NA 4(NA 1+) FORMUL 7 HOH *77(H2 O) HELIX 1 1 TYR A 251 ARG A 263 1 13 HELIX 2 2 ASN A 288 VAL A 299 1 12 HELIX 3 3 THR A 308 ASN A 323 1 16 HELIX 4 4 SER A 348 TRP A 355 5 8 HELIX 5 5 GLU B 253 CYS B 265 1 13 HELIX 6 6 ASN B 288 GLU B 298 1 11 HELIX 7 7 THR B 308 ARG B 321 1 14 HELIX 8 8 SER B 348 TRP B 355 5 8 SHEET 1 A 5 THR A 273 PHE A 275 0 SHEET 2 A 5 ASN A 278 MET A 282 -1 O TYR A 280 N THR A 273 SHEET 3 A 5 TYR A 386 PRO A 392 -1 O LYS A 391 N CYS A 279 SHEET 4 A 5 SER A 326 SER A 331 1 N TRP A 327 O TYR A 386 SHEET 5 A 5 GLN A 340 TRP A 341 -1 O GLN A 340 N SER A 331 SHEET 1 B 5 GLN A 302 LEU A 303 0 SHEET 2 B 5 TYR A 386 PRO A 392 -1 O LYS A 390 N GLN A 302 SHEET 3 B 5 SER A 326 SER A 331 1 N TRP A 327 O TYR A 386 SHEET 4 B 5 CYS A 368 SER A 372 -1 O PHE A 371 N SER A 326 SHEET 5 B 5 GLY A 375 ASN A 379 -1 O GLY A 375 N SER A 372 SHEET 1 C 5 THR B 273 PHE B 275 0 SHEET 2 C 5 ASN B 278 MET B 282 -1 O TYR B 280 N THR B 273 SHEET 3 C 5 TYR B 386 PRO B 392 -1 O LYS B 391 N CYS B 279 SHEET 4 C 5 SER B 326 SER B 331 1 N TRP B 327 O TYR B 386 SHEET 5 C 5 GLN B 340 TRP B 341 -1 O GLN B 340 N SER B 331 SHEET 1 D 5 GLN B 302 LEU B 303 0 SHEET 2 D 5 TYR B 386 PRO B 392 -1 O LYS B 390 N GLN B 302 SHEET 3 D 5 SER B 326 SER B 331 1 N TRP B 327 O TYR B 386 SHEET 4 D 5 CYS B 368 PHE B 371 -1 O PHE B 371 N SER B 326 SHEET 5 D 5 TRP B 376 ASN B 379 -1 O ASN B 377 N GLU B 370 SSBOND 1 CYS A 265 CYS A 395 1555 1555 2.03 SSBOND 2 CYS A 268 CYS A 279 1555 1555 2.03 SSBOND 3 CYS A 296 CYS A 389 1555 1555 2.05 SSBOND 4 CYS A 368 CYS A 381 1555 1555 2.04 SSBOND 5 CYS B 265 CYS B 395 1555 1555 2.03 SSBOND 6 CYS B 268 CYS B 279 1555 1555 2.04 SSBOND 7 CYS B 296 CYS B 389 1555 1555 2.05 SSBOND 8 CYS B 368 CYS B 381 1555 1555 2.04 LINK O HOH A 62 NA NA A 100 1555 1555 2.48 LINK O HOH A 63 NA NA A 100 1555 1555 2.40 LINK NA NA A 100 O ASN A 361 1555 1555 2.50 LINK NA NA A 100 O GLU A 366 1555 1555 2.14 LINK NA NA A 100 OD2 ASP A 378 1555 1555 2.83 LINK NA NA A 101 OE2 GLU A 359 1555 1555 2.68 LINK NA NA A 101 O ASP A 378 1555 1555 2.35 LINK NA NA A 101 OD1 ASP A 378 1555 1555 2.20 LINK O HOH B 68 NA NA B 200 1555 1555 2.46 LINK O HOH B 75 NA NA B 201 1555 1555 2.40 LINK NA NA B 200 O ASN B 361 1555 1555 2.12 LINK NA NA B 200 O GLU B 366 1555 1555 2.38 LINK NA NA B 200 OD2 ASP B 378 1555 1555 2.67 LINK NA NA B 201 OE1 GLU B 359 1555 1555 2.51 LINK NA NA B 201 OE1 GLU B 366 1555 1555 2.56 LINK NA NA B 201 O ASP B 378 1555 1555 2.39 LINK NA NA B 201 OD1 ASP B 378 1555 1555 2.15 CISPEP 1 GLU A 359 PRO A 360 0 -0.15 CISPEP 2 GLU B 359 PRO B 360 0 -0.20 SITE 1 AC1 5 HOH A 62 HOH A 63 ASN A 361 GLU A 366 SITE 2 AC1 5 ASP A 378 SITE 1 AC2 4 GLU A 359 ASN A 361 GLU A 366 ASP A 378 SITE 1 AC3 4 HOH B 68 ASN B 361 GLU B 366 ASP B 378 SITE 1 AC4 5 HOH B 75 GLU B 359 ASN B 361 GLU B 366 SITE 2 AC4 5 ASP B 378 CRYST1 82.050 82.050 110.260 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012188 0.007037 0.000000 0.00000 SCALE2 0.000000 0.014074 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009069 0.00000