HEADER RNA BINDING PROTEIN/STRUCTURAL PROTEIN 30-AUG-04 1XBI TITLE HIGH RESOLUTION STRUCTURE OF METHANOCALDOCOCCUS JANNASCHII L7AE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 50S RIBOSOMAL PROTEIN L7AE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 GENE: RPL7AE, MJ1203; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS (NOVAGEN); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ALPHA-BETA-ALPHA SANDWICH FOLD, RNA BINDING PROTEIN-STRUCTURAL KEYWDS 2 PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.A.BROWN II,J.SURYADI,D.V.LIEBERMAN,E.J.TRAN,E.S.MAXWELL REVDAT 4 23-AUG-23 1XBI 1 REMARK SEQADV REVDAT 3 11-OCT-17 1XBI 1 REMARK REVDAT 2 24-FEB-09 1XBI 1 VERSN REVDAT 1 09-AUG-05 1XBI 0 JRNL AUTH J.SURYADI,E.J.TRAN,E.S.MAXWELL,B.A.BROWN II JRNL TITL THE CRYSTAL STRUCTURE OF THE METHANOCALDOCOCCUS JANNASCHII JRNL TITL 2 MULTIFUNCTIONAL L7AE RNA-BINDING PROTEIN REVEALS AN JRNL TITL 3 INDUCED-FIT INTERACTION WITH THE BOX C/D RNAS. JRNL REF BIOCHEMISTRY V. 44 9657 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 16008351 JRNL DOI 10.1021/BI050568Q REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0001 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 18451 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.135 REMARK 3 R VALUE (WORKING SET) : 0.132 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 962 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1249 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1310 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.2470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 902 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 173 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.15000 REMARK 3 B33 (A**2) : -0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.074 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.072 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.524 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 983 ; 0.063 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 968 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1326 ; 4.590 ; 2.006 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2291 ; 2.240 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 117 ; 6.512 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 42 ;37.256 ;27.381 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 208 ;19.046 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;34.465 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 160 ; 0.273 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1020 ; 0.020 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 146 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 203 ; 0.291 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 963 ; 0.232 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 694 ; 0.124 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 95 ; 0.285 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 27 ; 0.382 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 47 ; 0.368 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.465 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 747 ; 4.185 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 240 ; 1.503 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 978 ; 4.586 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 431 ; 8.974 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 348 ;11.591 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2189 ; 4.221 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 173 ;22.368 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1941 ; 6.009 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1XBI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-SEP-04. REMARK 100 THE DEPOSITION ID IS D_1000030170. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X26C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9000 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MADNESS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19412 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.440 REMARK 200 RESOLUTION RANGE LOW (A) : 27.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 31.5044 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.83900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.195 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: PDB ENTRY 1RA4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 50MM HEPES, 10% REMARK 280 ISOPROPANOL, 5% ETHYLENE GLYCOL, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.83250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.95700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.43450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 25.95700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.83250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.43450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 287 O HOH A 299 1.56 REMARK 500 OE2 GLU A 104 O HOH A 255 1.69 REMARK 500 O HOH A 215 O HOH A 218 2.01 REMARK 500 O HOH A 241 O HOH A 275 2.03 REMARK 500 ND2 ASN A 32 O HOH A 274 2.14 REMARK 500 OE2 GLU A 103 O HOH A 263 2.16 REMARK 500 O HOH A 331 O HOH A 362 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 261 O HOH A 318 4466 1.49 REMARK 500 OE2 GLU A 55 O HOH A 215 2575 1.56 REMARK 500 OE1 GLU A 39 O HOH A 280 2565 1.64 REMARK 500 O HOH A 229 O HOH A 297 4566 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A -1 N HIS A -1 CA 0.144 REMARK 500 HIS A -1 CA HIS A -1 CB 0.150 REMARK 500 MET A 1 N MET A 1 CA -0.339 REMARK 500 LYS A 6 CB LYS A 6 CG -0.198 REMARK 500 LYS A 6 CG LYS A 6 CD 0.218 REMARK 500 LYS A 6 CD LYS A 6 CE 0.178 REMARK 500 LYS A 6 CE LYS A 6 NZ -0.170 REMARK 500 LYS A 8 CG LYS A 8 CD 0.217 REMARK 500 LYS A 8 CD LYS A 8 CE 0.290 REMARK 500 GLU A 11 CB GLU A 11 CG -0.240 REMARK 500 GLU A 11 CG GLU A 11 CD 0.099 REMARK 500 GLU A 11 CD GLU A 11 OE1 0.095 REMARK 500 GLU A 12 CD GLU A 12 OE1 0.086 REMARK 500 GLU A 12 CD GLU A 12 OE2 0.069 REMARK 500 LYS A 15 CD LYS A 15 CE 0.182 REMARK 500 GLU A 16 CD GLU A 16 OE1 0.097 REMARK 500 GLU A 16 CD GLU A 16 OE2 -0.072 REMARK 500 LYS A 28 CE LYS A 28 NZ 0.169 REMARK 500 LYS A 29 CD LYS A 29 CE -0.221 REMARK 500 ASN A 32 CG ASN A 32 ND2 -0.183 REMARK 500 GLU A 33 CG GLU A 33 CD 0.131 REMARK 500 GLU A 33 CD GLU A 33 OE1 0.070 REMARK 500 GLU A 33 CD GLU A 33 OE2 0.162 REMARK 500 GLU A 39 CA GLU A 39 CB -0.156 REMARK 500 GLU A 39 CB GLU A 39 CG -0.134 REMARK 500 GLU A 39 CG GLU A 39 CD 0.097 REMARK 500 GLU A 39 CD GLU A 39 OE2 0.173 REMARK 500 ARG A 40 CB ARG A 40 CG -0.252 REMARK 500 ARG A 40 CD ARG A 40 NE -0.121 REMARK 500 ARG A 40 NE ARG A 40 CZ -0.086 REMARK 500 ARG A 40 NE ARG A 40 CZ 0.113 REMARK 500 ARG A 40 CZ ARG A 40 NH1 0.080 REMARK 500 ARG A 40 CZ ARG A 40 NH2 0.115 REMARK 500 LYS A 53 CD LYS A 53 CE 0.161 REMARK 500 GLU A 56 CD GLU A 56 OE1 0.165 REMARK 500 GLU A 56 CD GLU A 56 OE1 -0.086 REMARK 500 GLU A 56 CD GLU A 56 OE2 0.117 REMARK 500 GLU A 56 CD GLU A 56 OE2 -0.073 REMARK 500 HIS A 60 NE2 HIS A 60 CD2 -0.067 REMARK 500 GLU A 66 CG GLU A 66 CD 0.141 REMARK 500 GLU A 67 CD GLU A 67 OE1 -0.072 REMARK 500 LYS A 68 CD LYS A 68 CE 0.381 REMARK 500 TYR A 72 CD1 TYR A 72 CE1 -0.093 REMARK 500 TYR A 72 CZ TYR A 72 CE2 -0.078 REMARK 500 LYS A 83 CE LYS A 83 NZ 0.237 REMARK 500 GLY A 86 CA GLY A 86 C -0.117 REMARK 500 GLU A 88 CB GLU A 88 CG 0.148 REMARK 500 GLU A 88 CD GLU A 88 OE2 0.182 REMARK 500 GLU A 99 CG GLU A 99 CD -0.123 REMARK 500 GLU A 103 CG GLU A 103 CD 0.251 REMARK 500 REMARK 500 THIS ENTRY HAS 59 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A -1 CB - CA - C ANGL. DEV. = 14.1 DEGREES REMARK 500 MET A 1 C - N - CA ANGL. DEV. = 17.2 DEGREES REMARK 500 VAL A 3 CA - CB - CG2 ANGL. DEV. = -9.4 DEGREES REMARK 500 TYR A 4 CB - CG - CD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 TYR A 4 CG - CD2 - CE2 ANGL. DEV. = 5.8 DEGREES REMARK 500 LYS A 8 CD - CE - NZ ANGL. DEV. = -24.6 DEGREES REMARK 500 GLU A 11 OE1 - CD - OE2 ANGL. DEV. = 8.0 DEGREES REMARK 500 GLU A 12 OE1 - CD - OE2 ANGL. DEV. = -8.3 DEGREES REMARK 500 LYS A 15 CD - CE - NZ ANGL. DEV. = -22.4 DEGREES REMARK 500 ASP A 19 CB - CG - OD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ASP A 19 O - C - N ANGL. DEV. = -9.9 DEGREES REMARK 500 ASN A 32 CB - CA - C ANGL. DEV. = 16.1 DEGREES REMARK 500 LYS A 36 CD - CE - NZ ANGL. DEV. = -19.5 DEGREES REMARK 500 GLU A 39 N - CA - CB ANGL. DEV. = 11.5 DEGREES REMARK 500 ARG A 40 CD - NE - CZ ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG A 40 CD - NE - CZ ANGL. DEV. = 9.7 DEGREES REMARK 500 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 40 NE - CZ - NH1 ANGL. DEV. = -15.3 DEGREES REMARK 500 ARG A 40 NE - CZ - NH2 ANGL. DEV. = -10.5 DEGREES REMARK 500 ARG A 40 NE - CZ - NH2 ANGL. DEV. = 9.1 DEGREES REMARK 500 GLU A 56 OE1 - CD - OE2 ANGL. DEV. = 10.1 DEGREES REMARK 500 GLU A 56 OE1 - CD - OE2 ANGL. DEV. = -9.3 DEGREES REMARK 500 TYR A 63 CB - CG - CD2 ANGL. DEV. = 4.2 DEGREES REMARK 500 GLU A 67 OE1 - CD - OE2 ANGL. DEV. = 10.4 DEGREES REMARK 500 LYS A 68 CG - CD - CE ANGL. DEV. = 25.2 DEGREES REMARK 500 LYS A 68 CD - CE - NZ ANGL. DEV. = 17.0 DEGREES REMARK 500 ASP A 80 OD1 - CG - OD2 ANGL. DEV. = 18.2 DEGREES REMARK 500 ASP A 80 CB - CG - OD1 ANGL. DEV. = -7.1 DEGREES REMARK 500 ASP A 80 CB - CG - OD2 ANGL. DEV. = -11.1 DEGREES REMARK 500 GLU A 99 OE1 - CD - OE2 ANGL. DEV. = -17.3 DEGREES REMARK 500 GLU A 99 CG - CD - OE2 ANGL. DEV. = 16.2 DEGREES REMARK 500 GLY A 100 O - C - N ANGL. DEV. = -9.8 DEGREES REMARK 500 ASP A 101 CB - CG - OD1 ANGL. DEV. = -8.2 DEGREES REMARK 500 GLU A 103 OE1 - CD - OE2 ANGL. DEV. = -10.9 DEGREES REMARK 500 GLU A 104 N - CA - CB ANGL. DEV. = 15.6 DEGREES REMARK 500 GLU A 104 OE1 - CD - OE2 ANGL. DEV. = -9.7 DEGREES REMARK 500 LYS A 111 CD - CE - NZ ANGL. DEV. = -18.6 DEGREES REMARK 500 LYS A 116 CD - CE - NZ ANGL. DEV. = -14.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 1 94.04 57.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU A 16 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 88 -10.66 REMARK 500 LYS A 106 -10.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 150 DBREF 1XBI A 1 117 UNP P54066 RL7A_METJA 1 117 SEQADV 1XBI GLY A -3 UNP P54066 CLONING ARTIFACT SEQADV 1XBI SER A -2 UNP P54066 CLONING ARTIFACT SEQADV 1XBI HIS A -1 UNP P54066 CLONING ARTIFACT SEQRES 1 A 120 GLY SER HIS MET ALA VAL TYR VAL LYS PHE LYS VAL PRO SEQRES 2 A 120 GLU GLU ILE GLN LYS GLU LEU LEU ASP ALA VAL ALA LYS SEQRES 3 A 120 ALA GLN LYS ILE LYS LYS GLY ALA ASN GLU VAL THR LYS SEQRES 4 A 120 ALA VAL GLU ARG GLY ILE ALA LYS LEU VAL ILE ILE ALA SEQRES 5 A 120 GLU ASP VAL LYS PRO GLU GLU VAL VAL ALA HIS LEU PRO SEQRES 6 A 120 TYR LEU CYS GLU GLU LYS GLY ILE PRO TYR ALA TYR VAL SEQRES 7 A 120 ALA SER LYS GLN ASP LEU GLY LYS ALA ALA GLY LEU GLU SEQRES 8 A 120 VAL ALA ALA SER SER VAL ALA ILE ILE ASN GLU GLY ASP SEQRES 9 A 120 ALA GLU GLU LEU LYS VAL LEU ILE GLU LYS VAL ASN VAL SEQRES 10 A 120 LEU LYS GLN HET EPE A 150 15 HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 2 EPE C8 H18 N2 O4 S FORMUL 3 HOH *173(H2 O) HELIX 1 1 PRO A 10 LYS A 23 1 14 HELIX 2 2 GLY A 30 ARG A 40 1 11 HELIX 3 3 PRO A 54 VAL A 58 5 5 HELIX 4 4 HIS A 60 LYS A 68 1 9 HELIX 5 5 SER A 77 ALA A 85 1 9 HELIX 6 6 ASP A 101 LYS A 116 1 16 SHEET 1 A 4 LYS A 26 LYS A 29 0 SHEET 2 A 4 SER A 93 ASN A 98 -1 O ILE A 97 N LYS A 26 SHEET 3 A 4 LEU A 45 ALA A 49 -1 N ILE A 47 O VAL A 94 SHEET 4 A 4 TYR A 72 VAL A 75 1 O ALA A 73 N ILE A 48 CISPEP 1 LYS A 53 PRO A 54 0 -3.33 SITE 1 AC1 11 PRO A 10 GLU A 11 GLU A 56 ALA A 59 SITE 2 AC1 11 TYR A 63 HOH A 217 HOH A 232 HOH A 238 SITE 3 AC1 11 HOH A 240 HOH A 253 HOH A 278 CRYST1 43.665 48.869 51.914 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022902 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020463 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019263 0.00000