data_1XCD # _entry.id 1XCD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1XCD RCSB RCSB030198 WWPDB D_1000030198 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1XKU 'Dimeric recombinant bovine decorin' unspecified PDB 1XEC 'Dimeric bovine tissue-extracted decorin, crystal form 2' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1XCD _pdbx_database_status.recvd_initial_deposition_date 2004-09-01 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Scott, P.G.' 1 'McEwan, P.A.' 2 'Dodd, C.M.' 3 'Bergmann, E.M.' 4 'Bishop, P.N.' 5 'Bella, J.' 6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Crystal structure of the dimeric protein core of decorin, the archetypal small leucine-rich repeat proteoglycan' Proc.Natl.Acad.Sci.Usa 101 15633 15638 2004 PNASA6 US 0027-8424 0040 ? 15501918 10.1073/pnas.0402976101 1 'Light and X-ray scattering show decorin to be a dimer in solution' J.Biol.Chem. 278 18353 18359 2003 JBCHA3 US 0021-9258 0071 ? 12601001 10.1074/jbc.M211936200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Scott, P.G.' 1 ? primary 'McEwan, P.A.' 2 ? primary 'Dodd, C.M.' 3 ? primary 'Bergmann, E.M.' 4 ? primary 'Bishop, P.N.' 5 ? primary 'Bella, J.' 6 ? 1 'Scott, P.G.' 7 ? 1 'Grossmann, J.G.' 8 ? 1 'Dodd, C.M.' 9 ? 1 'Sheehan, J.K.' 10 ? 1 'Bishop, P.N.' 11 ? # _cell.entry_id 1XCD _cell.length_a 55.380 _cell.length_b 124.110 _cell.length_c 129.520 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XCD _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat Decorin 36383.758 1 ? ? ? ? 2 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 3 ? ? ? ? 3 non-polymer syn 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 122.143 2 ? ? ? ? 4 water nat water 18.015 129 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Bone proteoglycan II, PG-S2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;DEASGIGPEEHFPEVPEIEPMGPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHT LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV RAAVQLGNY ; _entity_poly.pdbx_seq_one_letter_code_can ;DEASGIGPEEHFPEVPEIEPMGPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHT LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV RAAVQLGNY ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 GLU n 1 3 ALA n 1 4 SER n 1 5 GLY n 1 6 ILE n 1 7 GLY n 1 8 PRO n 1 9 GLU n 1 10 GLU n 1 11 HIS n 1 12 PHE n 1 13 PRO n 1 14 GLU n 1 15 VAL n 1 16 PRO n 1 17 GLU n 1 18 ILE n 1 19 GLU n 1 20 PRO n 1 21 MET n 1 22 GLY n 1 23 PRO n 1 24 VAL n 1 25 CYS n 1 26 PRO n 1 27 PHE n 1 28 ARG n 1 29 CYS n 1 30 GLN n 1 31 CYS n 1 32 HIS n 1 33 LEU n 1 34 ARG n 1 35 VAL n 1 36 VAL n 1 37 GLN n 1 38 CYS n 1 39 SER n 1 40 ASP n 1 41 LEU n 1 42 GLY n 1 43 LEU n 1 44 GLU n 1 45 LYS n 1 46 VAL n 1 47 PRO n 1 48 LYS n 1 49 ASP n 1 50 LEU n 1 51 PRO n 1 52 PRO n 1 53 ASP n 1 54 THR n 1 55 ALA n 1 56 LEU n 1 57 LEU n 1 58 ASP n 1 59 LEU n 1 60 GLN n 1 61 ASN n 1 62 ASN n 1 63 LYS n 1 64 ILE n 1 65 THR n 1 66 GLU n 1 67 ILE n 1 68 LYS n 1 69 ASP n 1 70 GLY n 1 71 ASP n 1 72 PHE n 1 73 LYS n 1 74 ASN n 1 75 LEU n 1 76 LYS n 1 77 ASN n 1 78 LEU n 1 79 HIS n 1 80 THR n 1 81 LEU n 1 82 ILE n 1 83 LEU n 1 84 ILE n 1 85 ASN n 1 86 ASN n 1 87 LYS n 1 88 ILE n 1 89 SER n 1 90 LYS n 1 91 ILE n 1 92 SER n 1 93 PRO n 1 94 GLY n 1 95 ALA n 1 96 PHE n 1 97 ALA n 1 98 PRO n 1 99 LEU n 1 100 VAL n 1 101 LYS n 1 102 LEU n 1 103 GLU n 1 104 ARG n 1 105 LEU n 1 106 TYR n 1 107 LEU n 1 108 SER n 1 109 LYS n 1 110 ASN n 1 111 GLN n 1 112 LEU n 1 113 LYS n 1 114 GLU n 1 115 LEU n 1 116 PRO n 1 117 GLU n 1 118 LYS n 1 119 MET n 1 120 PRO n 1 121 LYS n 1 122 THR n 1 123 LEU n 1 124 GLN n 1 125 GLU n 1 126 LEU n 1 127 ARG n 1 128 VAL n 1 129 HIS n 1 130 GLU n 1 131 ASN n 1 132 GLU n 1 133 ILE n 1 134 THR n 1 135 LYS n 1 136 VAL n 1 137 ARG n 1 138 LYS n 1 139 SER n 1 140 VAL n 1 141 PHE n 1 142 ASN n 1 143 GLY n 1 144 LEU n 1 145 ASN n 1 146 GLN n 1 147 MET n 1 148 ILE n 1 149 VAL n 1 150 VAL n 1 151 GLU n 1 152 LEU n 1 153 GLY n 1 154 THR n 1 155 ASN n 1 156 PRO n 1 157 LEU n 1 158 LYS n 1 159 SER n 1 160 SER n 1 161 GLY n 1 162 ILE n 1 163 GLU n 1 164 ASN n 1 165 GLY n 1 166 ALA n 1 167 PHE n 1 168 GLN n 1 169 GLY n 1 170 MET n 1 171 LYS n 1 172 LYS n 1 173 LEU n 1 174 SER n 1 175 TYR n 1 176 ILE n 1 177 ARG n 1 178 ILE n 1 179 ALA n 1 180 ASP n 1 181 THR n 1 182 ASN n 1 183 ILE n 1 184 THR n 1 185 THR n 1 186 ILE n 1 187 PRO n 1 188 GLN n 1 189 GLY n 1 190 LEU n 1 191 PRO n 1 192 PRO n 1 193 SER n 1 194 LEU n 1 195 THR n 1 196 GLU n 1 197 LEU n 1 198 HIS n 1 199 LEU n 1 200 ASP n 1 201 GLY n 1 202 ASN n 1 203 LYS n 1 204 ILE n 1 205 THR n 1 206 LYS n 1 207 VAL n 1 208 ASP n 1 209 ALA n 1 210 ALA n 1 211 SER n 1 212 LEU n 1 213 LYS n 1 214 GLY n 1 215 LEU n 1 216 ASN n 1 217 ASN n 1 218 LEU n 1 219 ALA n 1 220 LYS n 1 221 LEU n 1 222 GLY n 1 223 LEU n 1 224 SER n 1 225 PHE n 1 226 ASN n 1 227 SER n 1 228 ILE n 1 229 SER n 1 230 ALA n 1 231 VAL n 1 232 ASP n 1 233 ASN n 1 234 GLY n 1 235 SER n 1 236 LEU n 1 237 ALA n 1 238 ASN n 1 239 THR n 1 240 PRO n 1 241 HIS n 1 242 LEU n 1 243 ARG n 1 244 GLU n 1 245 LEU n 1 246 HIS n 1 247 LEU n 1 248 ASN n 1 249 ASN n 1 250 ASN n 1 251 LYS n 1 252 LEU n 1 253 VAL n 1 254 LYS n 1 255 VAL n 1 256 PRO n 1 257 GLY n 1 258 GLY n 1 259 LEU n 1 260 ALA n 1 261 ASP n 1 262 HIS n 1 263 LYS n 1 264 TYR n 1 265 ILE n 1 266 GLN n 1 267 VAL n 1 268 VAL n 1 269 TYR n 1 270 LEU n 1 271 HIS n 1 272 ASN n 1 273 ASN n 1 274 ASN n 1 275 ILE n 1 276 SER n 1 277 ALA n 1 278 ILE n 1 279 GLY n 1 280 SER n 1 281 ASN n 1 282 ASP n 1 283 PHE n 1 284 CYS n 1 285 PRO n 1 286 PRO n 1 287 GLY n 1 288 TYR n 1 289 ASN n 1 290 THR n 1 291 LYS n 1 292 LYS n 1 293 ALA n 1 294 SER n 1 295 TYR n 1 296 SER n 1 297 GLY n 1 298 VAL n 1 299 SER n 1 300 LEU n 1 301 PHE n 1 302 SER n 1 303 ASN n 1 304 PRO n 1 305 VAL n 1 306 GLN n 1 307 TYR n 1 308 TRP n 1 309 GLU n 1 310 ILE n 1 311 GLN n 1 312 PRO n 1 313 SER n 1 314 THR n 1 315 PHE n 1 316 ARG n 1 317 CYS n 1 318 VAL n 1 319 TYR n 1 320 VAL n 1 321 ARG n 1 322 ALA n 1 323 ALA n 1 324 VAL n 1 325 GLN n 1 326 LEU n 1 327 GLY n 1 328 ASN n 1 329 TYR n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name cattle _entity_src_nat.pdbx_organism_scientific 'Bos taurus' _entity_src_nat.pdbx_ncbi_taxonomy_id 9913 _entity_src_nat.genus Bos _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details 'Extracted from calf skin under denaturing conditions and refolded' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PGS2_BOVIN _struct_ref.pdbx_db_accession P21793 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DEASGIGPEEHFPEVPEIEPMGPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHT LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP HLRELHLNNNKLAKVPGGVADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV RAAVQLGNY ; _struct_ref.pdbx_align_begin 31 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1XCD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 329 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P21793 _struct_ref_seq.db_align_beg 31 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 359 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 329 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1XCD VAL A 253 ? UNP P21793 ALA 283 'SEE REMARK 999' 253 1 1 1XCD LEU A 259 ? UNP P21793 VAL 289 'SEE REMARK 999' 259 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TRS non-polymer . 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 'TRIS BUFFER' 'C4 H12 N O3 1' 122.143 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1XCD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.1 _exptl_crystal.density_percent_sol 59.98 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.75 _exptl_crystal_grow.pdbx_details 'PEG 400, Tris, beta-octyl-D-glucoside, sodium azide, pH 7.75, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2001-11-30 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'YALE MIRRORS' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.2.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.2.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.entry_id 1XCD _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 55.90 _reflns.d_resolution_high 2.31 _reflns.number_obs 20012 _reflns.number_all ? _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.044 _reflns.pdbx_netI_over_sigmaI 11.6 _reflns.B_iso_Wilson_estimate 35.6 _reflns.pdbx_redundancy 4.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.31 _reflns_shell.d_res_low 2.43 _reflns_shell.percent_possible_all 96.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.212 _reflns_shell.meanI_over_sigI_obs 3.5 _reflns_shell.pdbx_redundancy 4.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2875 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1XCD _refine.ls_number_reflns_obs 19940 _refine.ls_number_reflns_all 20040 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1988687.57 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 33.14 _refine.ls_d_res_high 2.31 _refine.ls_percent_reflns_obs 99.5 _refine.ls_R_factor_obs 0.222 _refine.ls_R_factor_all 0.251 _refine.ls_R_factor_R_work 0.222 _refine.ls_R_factor_R_free 0.257 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1897 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 42.9 _refine.aniso_B[1][1] 13.95 _refine.aniso_B[2][2] -3.97 _refine.aniso_B[3][3] -9.98 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.305406 _refine.solvent_model_param_bsol 33.7186 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'BULK SOLVENT MODEL USED' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SIRAS _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1XCD _refine_analyze.Luzzati_coordinate_error_obs 0.26 _refine_analyze.Luzzati_sigma_a_obs 0.19 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.32 _refine_analyze.Luzzati_sigma_a_free 0.27 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2371 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 58 _refine_hist.number_atoms_solvent 129 _refine_hist.number_atoms_total 2558 _refine_hist.d_res_high 2.31 _refine_hist.d_res_low 33.14 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 25.8 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.91 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.44 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.44 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.23 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.39 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.31 _refine_ls_shell.d_res_low 2.45 _refine_ls_shell.number_reflns_R_work 5898 _refine_ls_shell.R_factor_R_work 0.282 _refine_ls_shell.percent_reflns_obs 99.5 _refine_ls_shell.R_factor_R_free 0.357 _refine_ls_shell.R_factor_R_free_error 0.020 _refine_ls_shell.percent_reflns_R_free 5.1 _refine_ls_shell.number_reflns_R_free 319 _refine_ls_shell.number_reflns_obs 5898 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 TMN.PARAM TMN.TOP 'X-RAY DIFFRACTION' 3 CARBOHYDRATE.PARAM CARBOHYDRATE.TOP 'X-RAY DIFFRACTION' 4 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1XCD _struct.title 'Dimeric bovine tissue-extracted decorin, crystal form 1' _struct.pdbx_descriptor Decorin _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1XCD _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' _struct_keywords.text 'LEUCINE-RICH REPEAT, PROTEOGLYCAN, STRUCTURAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 137 ? ASN A 142 ? ARG A 137 ASN A 142 5 ? 6 HELX_P HELX_P2 2 LYS A 158 ? ILE A 162 ? LYS A 158 ILE A 162 5 ? 5 HELX_P HELX_P3 3 SER A 235 ? THR A 239 ? SER A 235 THR A 239 5 ? 5 HELX_P HELX_P4 4 GLN A 306 ? ILE A 310 ? GLN A 306 ILE A 310 5 ? 5 HELX_P HELX_P5 5 GLN A 311 ? ARG A 316 ? GLN A 311 ARG A 316 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 25 SG ? ? ? 1_555 A CYS 31 SG ? ? A CYS 25 A CYS 31 1_555 ? ? ? ? ? ? ? 2.041 ? ? disulf2 disulf ? ? A CYS 29 SG ? ? ? 1_555 A CYS 38 SG ? ? A CYS 29 A CYS 38 1_555 ? ? ? ? ? ? ? 2.045 ? ? disulf3 disulf ? ? A CYS 284 SG ? ? ? 1_555 A CYS 317 SG ? ? A CYS 284 A CYS 317 1_555 ? ? ? ? ? ? ? 2.036 ? ? covale1 covale one ? A ASN 182 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 182 A NAG 400 1_555 ? ? ? ? ? ? ? 1.449 ? N-Glycosylation covale2 covale one ? A ASN 233 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 233 A NAG 401 1_555 ? ? ? ? ? ? ? 1.453 ? N-Glycosylation covale3 covale one ? A ASN 274 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 274 A NAG 402 1_555 ? ? ? ? ? ? ? 1.451 ? N-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 14 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel A 7 8 ? parallel A 8 9 ? parallel A 9 10 ? parallel A 10 11 ? parallel A 11 12 ? parallel A 12 13 ? parallel A 13 14 ? parallel B 1 2 ? parallel C 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 30 ? CYS A 31 ? GLN A 30 CYS A 31 A 2 VAL A 35 ? GLN A 37 ? VAL A 35 GLN A 37 A 3 LEU A 56 ? ASP A 58 ? LEU A 56 ASP A 58 A 4 THR A 80 ? ILE A 82 ? THR A 80 ILE A 82 A 5 ARG A 104 ? TYR A 106 ? ARG A 104 TYR A 106 A 6 GLU A 125 ? ARG A 127 ? GLU A 125 ARG A 127 A 7 VAL A 149 ? GLU A 151 ? VAL A 149 GLU A 151 A 8 TYR A 175 ? ARG A 177 ? TYR A 175 ARG A 177 A 9 GLU A 196 ? HIS A 198 ? GLU A 196 HIS A 198 A 10 LYS A 220 ? GLY A 222 ? LYS A 220 GLY A 222 A 11 GLU A 244 ? HIS A 246 ? GLU A 244 HIS A 246 A 12 VAL A 267 ? TYR A 269 ? VAL A 267 TYR A 269 A 13 GLY A 297 ? SER A 299 ? GLY A 297 SER A 299 A 14 VAL A 324 ? GLN A 325 ? VAL A 324 GLN A 325 B 1 GLU A 66 ? ILE A 67 ? GLU A 66 ILE A 67 B 2 LYS A 90 ? ILE A 91 ? LYS A 90 ILE A 91 C 1 LYS A 206 ? VAL A 207 ? LYS A 206 VAL A 207 C 2 ALA A 230 ? VAL A 231 ? ALA A 230 VAL A 231 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLN A 30 ? N GLN A 30 O GLN A 37 ? O GLN A 37 A 2 3 N VAL A 36 ? N VAL A 36 O ASP A 58 ? O ASP A 58 A 3 4 N LEU A 57 ? N LEU A 57 O ILE A 82 ? O ILE A 82 A 4 5 N LEU A 81 ? N LEU A 81 O TYR A 106 ? O TYR A 106 A 5 6 N LEU A 105 ? N LEU A 105 O GLU A 125 ? O GLU A 125 A 6 7 N LEU A 126 ? N LEU A 126 O GLU A 151 ? O GLU A 151 A 7 8 N VAL A 150 ? N VAL A 150 O ARG A 177 ? O ARG A 177 A 8 9 N ILE A 176 ? N ILE A 176 O HIS A 198 ? O HIS A 198 A 9 10 N LEU A 197 ? N LEU A 197 O GLY A 222 ? O GLY A 222 A 10 11 N LEU A 221 ? N LEU A 221 O GLU A 244 ? O GLU A 244 A 11 12 N LEU A 245 ? N LEU A 245 O VAL A 267 ? O VAL A 267 A 12 13 N VAL A 268 ? N VAL A 268 O GLY A 297 ? O GLY A 297 A 13 14 N VAL A 298 ? N VAL A 298 O GLN A 325 ? O GLN A 325 B 1 2 N ILE A 67 ? N ILE A 67 O LYS A 90 ? O LYS A 90 C 1 2 N VAL A 207 ? N VAL A 207 O ALA A 230 ? O ALA A 230 # _database_PDB_matrix.entry_id 1XCD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1XCD _atom_sites.fract_transf_matrix[1][1] 0.018057 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008057 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007721 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 ? ? ? A . n A 1 2 GLU 2 2 ? ? ? A . n A 1 3 ALA 3 3 ? ? ? A . n A 1 4 SER 4 4 ? ? ? A . n A 1 5 GLY 5 5 ? ? ? A . n A 1 6 ILE 6 6 ? ? ? A . n A 1 7 GLY 7 7 ? ? ? A . n A 1 8 PRO 8 8 ? ? ? A . n A 1 9 GLU 9 9 ? ? ? A . n A 1 10 GLU 10 10 ? ? ? A . n A 1 11 HIS 11 11 ? ? ? A . n A 1 12 PHE 12 12 ? ? ? A . n A 1 13 PRO 13 13 ? ? ? A . n A 1 14 GLU 14 14 ? ? ? A . n A 1 15 VAL 15 15 ? ? ? A . n A 1 16 PRO 16 16 ? ? ? A . n A 1 17 GLU 17 17 ? ? ? A . n A 1 18 ILE 18 18 ? ? ? A . n A 1 19 GLU 19 19 ? ? ? A . n A 1 20 PRO 20 20 ? ? ? A . n A 1 21 MET 21 21 ? ? ? A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 PRO 23 23 23 PRO PRO A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 CYS 25 25 25 CYS CYS A . n A 1 26 PRO 26 26 26 PRO PRO A . n A 1 27 PHE 27 27 27 PHE PHE A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 CYS 29 29 29 CYS CYS A . n A 1 30 GLN 30 30 30 GLN GLN A . n A 1 31 CYS 31 31 31 CYS CYS A . n A 1 32 HIS 32 32 32 HIS HIS A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 CYS 38 38 38 CYS CYS A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 ASP 40 40 40 ASP ASP A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 PRO 47 47 47 PRO PRO A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 PRO 51 51 51 PRO PRO A . n A 1 52 PRO 52 52 52 PRO PRO A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 THR 54 54 54 THR THR A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 ASP 58 58 58 ASP ASP A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 GLN 60 60 60 GLN GLN A . n A 1 61 ASN 61 61 61 ASN ASN A . n A 1 62 ASN 62 62 62 ASN ASN A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 THR 65 65 65 THR THR A . n A 1 66 GLU 66 66 66 GLU GLU A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 ASP 69 69 69 ASP ASP A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 ASP 71 71 71 ASP ASP A . n A 1 72 PHE 72 72 72 PHE PHE A . n A 1 73 LYS 73 73 73 LYS LYS A . n A 1 74 ASN 74 74 74 ASN ASN A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 ASN 77 77 77 ASN ASN A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 HIS 79 79 79 HIS HIS A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 ASN 85 85 85 ASN ASN A . n A 1 86 ASN 86 86 86 ASN ASN A . n A 1 87 LYS 87 87 87 LYS LYS A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 SER 89 89 89 SER SER A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 ILE 91 91 91 ILE ILE A . n A 1 92 SER 92 92 92 SER SER A . n A 1 93 PRO 93 93 93 PRO PRO A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 PHE 96 96 96 PHE PHE A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 PRO 98 98 98 PRO PRO A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 LYS 101 101 101 LYS LYS A . n A 1 102 LEU 102 102 102 LEU LEU A . n A 1 103 GLU 103 103 103 GLU GLU A . n A 1 104 ARG 104 104 104 ARG ARG A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 TYR 106 106 106 TYR TYR A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 SER 108 108 108 SER SER A . n A 1 109 LYS 109 109 109 LYS LYS A . n A 1 110 ASN 110 110 110 ASN ASN A . n A 1 111 GLN 111 111 111 GLN GLN A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 LYS 113 113 113 LYS LYS A . n A 1 114 GLU 114 114 114 GLU GLU A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 PRO 116 116 116 PRO PRO A . n A 1 117 GLU 117 117 117 GLU GLU A . n A 1 118 LYS 118 118 118 LYS LYS A . n A 1 119 MET 119 119 119 MET MET A . n A 1 120 PRO 120 120 120 PRO PRO A . n A 1 121 LYS 121 121 121 LYS LYS A . n A 1 122 THR 122 122 122 THR THR A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 GLN 124 124 124 GLN GLN A . n A 1 125 GLU 125 125 125 GLU GLU A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 ARG 127 127 127 ARG ARG A . n A 1 128 VAL 128 128 128 VAL VAL A . n A 1 129 HIS 129 129 129 HIS HIS A . n A 1 130 GLU 130 130 130 GLU GLU A . n A 1 131 ASN 131 131 131 ASN ASN A . n A 1 132 GLU 132 132 132 GLU GLU A . n A 1 133 ILE 133 133 133 ILE ILE A . n A 1 134 THR 134 134 134 THR THR A . n A 1 135 LYS 135 135 135 LYS LYS A . n A 1 136 VAL 136 136 136 VAL VAL A . n A 1 137 ARG 137 137 137 ARG ARG A . n A 1 138 LYS 138 138 138 LYS LYS A . n A 1 139 SER 139 139 139 SER SER A . n A 1 140 VAL 140 140 140 VAL VAL A . n A 1 141 PHE 141 141 141 PHE PHE A . n A 1 142 ASN 142 142 142 ASN ASN A . n A 1 143 GLY 143 143 143 GLY GLY A . n A 1 144 LEU 144 144 144 LEU LEU A . n A 1 145 ASN 145 145 145 ASN ASN A . n A 1 146 GLN 146 146 146 GLN GLN A . n A 1 147 MET 147 147 147 MET MET A . n A 1 148 ILE 148 148 148 ILE ILE A . n A 1 149 VAL 149 149 149 VAL VAL A . n A 1 150 VAL 150 150 150 VAL VAL A . n A 1 151 GLU 151 151 151 GLU GLU A . n A 1 152 LEU 152 152 152 LEU LEU A . n A 1 153 GLY 153 153 153 GLY GLY A . n A 1 154 THR 154 154 154 THR THR A . n A 1 155 ASN 155 155 155 ASN ASN A . n A 1 156 PRO 156 156 156 PRO PRO A . n A 1 157 LEU 157 157 157 LEU LEU A . n A 1 158 LYS 158 158 158 LYS LYS A . n A 1 159 SER 159 159 159 SER SER A . n A 1 160 SER 160 160 160 SER SER A . n A 1 161 GLY 161 161 161 GLY GLY A . n A 1 162 ILE 162 162 162 ILE ILE A . n A 1 163 GLU 163 163 163 GLU GLU A . n A 1 164 ASN 164 164 164 ASN ASN A . n A 1 165 GLY 165 165 165 GLY GLY A . n A 1 166 ALA 166 166 166 ALA ALA A . n A 1 167 PHE 167 167 167 PHE PHE A . n A 1 168 GLN 168 168 168 GLN GLN A . n A 1 169 GLY 169 169 169 GLY GLY A . n A 1 170 MET 170 170 170 MET MET A . n A 1 171 LYS 171 171 171 LYS LYS A . n A 1 172 LYS 172 172 172 LYS LYS A . n A 1 173 LEU 173 173 173 LEU LEU A . n A 1 174 SER 174 174 174 SER SER A . n A 1 175 TYR 175 175 175 TYR TYR A . n A 1 176 ILE 176 176 176 ILE ILE A . n A 1 177 ARG 177 177 177 ARG ARG A . n A 1 178 ILE 178 178 178 ILE ILE A . n A 1 179 ALA 179 179 179 ALA ALA A . n A 1 180 ASP 180 180 180 ASP ASP A . n A 1 181 THR 181 181 181 THR THR A . n A 1 182 ASN 182 182 182 ASN ASN A . n A 1 183 ILE 183 183 183 ILE ILE A . n A 1 184 THR 184 184 184 THR THR A . n A 1 185 THR 185 185 185 THR THR A . n A 1 186 ILE 186 186 186 ILE ILE A . n A 1 187 PRO 187 187 187 PRO PRO A . n A 1 188 GLN 188 188 188 GLN GLN A . n A 1 189 GLY 189 189 189 GLY GLY A . n A 1 190 LEU 190 190 190 LEU LEU A . n A 1 191 PRO 191 191 191 PRO PRO A . n A 1 192 PRO 192 192 192 PRO PRO A . n A 1 193 SER 193 193 193 SER SER A . n A 1 194 LEU 194 194 194 LEU LEU A . n A 1 195 THR 195 195 195 THR THR A . n A 1 196 GLU 196 196 196 GLU GLU A . n A 1 197 LEU 197 197 197 LEU LEU A . n A 1 198 HIS 198 198 198 HIS HIS A . n A 1 199 LEU 199 199 199 LEU LEU A . n A 1 200 ASP 200 200 200 ASP ASP A . n A 1 201 GLY 201 201 201 GLY GLY A . n A 1 202 ASN 202 202 202 ASN ASN A . n A 1 203 LYS 203 203 203 LYS LYS A . n A 1 204 ILE 204 204 204 ILE ILE A . n A 1 205 THR 205 205 205 THR THR A . n A 1 206 LYS 206 206 206 LYS LYS A . n A 1 207 VAL 207 207 207 VAL VAL A . n A 1 208 ASP 208 208 208 ASP ASP A . n A 1 209 ALA 209 209 209 ALA ALA A . n A 1 210 ALA 210 210 210 ALA ALA A . n A 1 211 SER 211 211 211 SER SER A . n A 1 212 LEU 212 212 212 LEU LEU A . n A 1 213 LYS 213 213 213 LYS LYS A . n A 1 214 GLY 214 214 214 GLY GLY A . n A 1 215 LEU 215 215 215 LEU LEU A . n A 1 216 ASN 216 216 216 ASN ASN A . n A 1 217 ASN 217 217 217 ASN ASN A . n A 1 218 LEU 218 218 218 LEU LEU A . n A 1 219 ALA 219 219 219 ALA ALA A . n A 1 220 LYS 220 220 220 LYS LYS A . n A 1 221 LEU 221 221 221 LEU LEU A . n A 1 222 GLY 222 222 222 GLY GLY A . n A 1 223 LEU 223 223 223 LEU LEU A . n A 1 224 SER 224 224 224 SER SER A . n A 1 225 PHE 225 225 225 PHE PHE A . n A 1 226 ASN 226 226 226 ASN ASN A . n A 1 227 SER 227 227 227 SER SER A . n A 1 228 ILE 228 228 228 ILE ILE A . n A 1 229 SER 229 229 229 SER SER A . n A 1 230 ALA 230 230 230 ALA ALA A . n A 1 231 VAL 231 231 231 VAL VAL A . n A 1 232 ASP 232 232 232 ASP ASP A . n A 1 233 ASN 233 233 233 ASN ASN A . n A 1 234 GLY 234 234 234 GLY GLY A . n A 1 235 SER 235 235 235 SER SER A . n A 1 236 LEU 236 236 236 LEU LEU A . n A 1 237 ALA 237 237 237 ALA ALA A . n A 1 238 ASN 238 238 238 ASN ASN A . n A 1 239 THR 239 239 239 THR THR A . n A 1 240 PRO 240 240 240 PRO PRO A . n A 1 241 HIS 241 241 241 HIS HIS A . n A 1 242 LEU 242 242 242 LEU LEU A . n A 1 243 ARG 243 243 243 ARG ARG A . n A 1 244 GLU 244 244 244 GLU GLU A . n A 1 245 LEU 245 245 245 LEU LEU A . n A 1 246 HIS 246 246 246 HIS HIS A . n A 1 247 LEU 247 247 247 LEU LEU A . n A 1 248 ASN 248 248 248 ASN ASN A . n A 1 249 ASN 249 249 249 ASN ASN A . n A 1 250 ASN 250 250 250 ASN ASN A . n A 1 251 LYS 251 251 251 LYS LYS A . n A 1 252 LEU 252 252 252 LEU LEU A . n A 1 253 VAL 253 253 253 VAL VAL A . n A 1 254 LYS 254 254 254 LYS LYS A . n A 1 255 VAL 255 255 255 VAL VAL A . n A 1 256 PRO 256 256 256 PRO PRO A . n A 1 257 GLY 257 257 257 GLY GLY A . n A 1 258 GLY 258 258 258 GLY GLY A . n A 1 259 LEU 259 259 259 LEU LEU A . n A 1 260 ALA 260 260 260 ALA ALA A . n A 1 261 ASP 261 261 261 ASP ASP A . n A 1 262 HIS 262 262 262 HIS HIS A . n A 1 263 LYS 263 263 263 LYS LYS A . n A 1 264 TYR 264 264 264 TYR TYR A . n A 1 265 ILE 265 265 265 ILE ILE A . n A 1 266 GLN 266 266 266 GLN GLN A . n A 1 267 VAL 267 267 267 VAL VAL A . n A 1 268 VAL 268 268 268 VAL VAL A . n A 1 269 TYR 269 269 269 TYR TYR A . n A 1 270 LEU 270 270 270 LEU LEU A . n A 1 271 HIS 271 271 271 HIS HIS A . n A 1 272 ASN 272 272 272 ASN ASN A . n A 1 273 ASN 273 273 273 ASN ASN A . n A 1 274 ASN 274 274 274 ASN ASN A . n A 1 275 ILE 275 275 275 ILE ILE A . n A 1 276 SER 276 276 276 SER SER A . n A 1 277 ALA 277 277 277 ALA ALA A . n A 1 278 ILE 278 278 278 ILE ILE A . n A 1 279 GLY 279 279 279 GLY GLY A . n A 1 280 SER 280 280 280 SER SER A . n A 1 281 ASN 281 281 281 ASN ASN A . n A 1 282 ASP 282 282 282 ASP ASP A . n A 1 283 PHE 283 283 283 PHE PHE A . n A 1 284 CYS 284 284 284 CYS CYS A . n A 1 285 PRO 285 285 285 PRO PRO A . n A 1 286 PRO 286 286 286 PRO PRO A . n A 1 287 GLY 287 287 287 GLY GLY A . n A 1 288 TYR 288 288 288 TYR TYR A . n A 1 289 ASN 289 289 289 ASN ASN A . n A 1 290 THR 290 290 290 THR THR A . n A 1 291 LYS 291 291 291 LYS LYS A . n A 1 292 LYS 292 292 292 LYS LYS A . n A 1 293 ALA 293 293 293 ALA ALA A . n A 1 294 SER 294 294 294 SER SER A . n A 1 295 TYR 295 295 295 TYR TYR A . n A 1 296 SER 296 296 296 SER SER A . n A 1 297 GLY 297 297 297 GLY GLY A . n A 1 298 VAL 298 298 298 VAL VAL A . n A 1 299 SER 299 299 299 SER SER A . n A 1 300 LEU 300 300 300 LEU LEU A . n A 1 301 PHE 301 301 301 PHE PHE A . n A 1 302 SER 302 302 302 SER SER A . n A 1 303 ASN 303 303 303 ASN ASN A . n A 1 304 PRO 304 304 304 PRO PRO A . n A 1 305 VAL 305 305 305 VAL VAL A . n A 1 306 GLN 306 306 306 GLN GLN A . n A 1 307 TYR 307 307 307 TYR TYR A . n A 1 308 TRP 308 308 308 TRP TRP A . n A 1 309 GLU 309 309 309 GLU GLU A . n A 1 310 ILE 310 310 310 ILE ILE A . n A 1 311 GLN 311 311 311 GLN GLN A . n A 1 312 PRO 312 312 312 PRO PRO A . n A 1 313 SER 313 313 313 SER SER A . n A 1 314 THR 314 314 314 THR THR A . n A 1 315 PHE 315 315 315 PHE PHE A . n A 1 316 ARG 316 316 316 ARG ARG A . n A 1 317 CYS 317 317 317 CYS CYS A . n A 1 318 VAL 318 318 318 VAL VAL A . n A 1 319 TYR 319 319 319 TYR TYR A . n A 1 320 VAL 320 320 320 VAL VAL A . n A 1 321 ARG 321 321 321 ARG ARG A . n A 1 322 ALA 322 322 322 ALA ALA A . n A 1 323 ALA 323 323 323 ALA ALA A . n A 1 324 VAL 324 324 324 VAL VAL A . n A 1 325 GLN 325 325 325 GLN GLN A . n A 1 326 LEU 326 326 326 LEU LEU A . n A 1 327 GLY 327 327 ? ? ? A . n A 1 328 ASN 328 328 ? ? ? A . n A 1 329 TYR 329 329 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG 1 400 400 NAG NAG A . C 2 NAG 1 401 401 NAG NAG A . D 2 NAG 1 402 402 NAG NAG A . E 3 TRS 1 700 700 TRS TMN A . F 3 TRS 1 701 701 TRS TMN A . G 4 HOH 1 500 500 HOH HOH A . G 4 HOH 2 501 501 HOH HOH A . G 4 HOH 3 502 502 HOH HOH A . G 4 HOH 4 503 503 HOH HOH A . G 4 HOH 5 504 504 HOH HOH A . G 4 HOH 6 505 505 HOH HOH A . G 4 HOH 7 506 506 HOH HOH A . G 4 HOH 8 507 507 HOH HOH A . G 4 HOH 9 508 508 HOH HOH A . G 4 HOH 10 509 509 HOH HOH A . G 4 HOH 11 510 510 HOH HOH A . G 4 HOH 12 511 511 HOH HOH A . G 4 HOH 13 512 512 HOH HOH A . G 4 HOH 14 513 513 HOH HOH A . G 4 HOH 15 514 514 HOH HOH A . G 4 HOH 16 515 515 HOH HOH A . G 4 HOH 17 516 516 HOH HOH A . G 4 HOH 18 517 517 HOH HOH A . G 4 HOH 19 518 518 HOH HOH A . G 4 HOH 20 519 519 HOH HOH A . G 4 HOH 21 520 520 HOH HOH A . G 4 HOH 22 521 521 HOH HOH A . G 4 HOH 23 522 522 HOH HOH A . G 4 HOH 24 523 523 HOH HOH A . G 4 HOH 25 524 524 HOH HOH A . G 4 HOH 26 525 525 HOH HOH A . G 4 HOH 27 526 526 HOH HOH A . G 4 HOH 28 527 527 HOH HOH A . G 4 HOH 29 528 528 HOH HOH A . G 4 HOH 30 529 529 HOH HOH A . G 4 HOH 31 530 530 HOH HOH A . G 4 HOH 32 531 531 HOH HOH A . G 4 HOH 33 532 532 HOH HOH A . G 4 HOH 34 533 533 HOH HOH A . G 4 HOH 35 535 535 HOH HOH A . G 4 HOH 36 536 536 HOH HOH A . G 4 HOH 37 537 537 HOH HOH A . G 4 HOH 38 538 538 HOH HOH A . G 4 HOH 39 539 539 HOH HOH A . G 4 HOH 40 540 540 HOH HOH A . G 4 HOH 41 541 541 HOH HOH A . G 4 HOH 42 542 542 HOH HOH A . G 4 HOH 43 543 543 HOH HOH A . G 4 HOH 44 544 544 HOH HOH A . G 4 HOH 45 545 545 HOH HOH A . G 4 HOH 46 546 546 HOH HOH A . G 4 HOH 47 547 547 HOH HOH A . G 4 HOH 48 548 548 HOH HOH A . G 4 HOH 49 549 549 HOH HOH A . G 4 HOH 50 550 550 HOH HOH A . G 4 HOH 51 551 551 HOH HOH A . G 4 HOH 52 552 552 HOH HOH A . G 4 HOH 53 553 553 HOH HOH A . G 4 HOH 54 554 554 HOH HOH A . G 4 HOH 55 555 555 HOH HOH A . G 4 HOH 56 556 556 HOH HOH A . G 4 HOH 57 557 557 HOH HOH A . G 4 HOH 58 558 558 HOH HOH A . G 4 HOH 59 559 559 HOH HOH A . G 4 HOH 60 560 560 HOH HOH A . G 4 HOH 61 561 561 HOH HOH A . G 4 HOH 62 562 562 HOH HOH A . G 4 HOH 63 563 563 HOH HOH A . G 4 HOH 64 564 564 HOH HOH A . G 4 HOH 65 565 565 HOH HOH A . G 4 HOH 66 566 566 HOH HOH A . G 4 HOH 67 567 567 HOH HOH A . G 4 HOH 68 568 568 HOH HOH A . G 4 HOH 69 570 570 HOH HOH A . G 4 HOH 70 571 571 HOH HOH A . G 4 HOH 71 572 572 HOH HOH A . G 4 HOH 72 573 573 HOH HOH A . G 4 HOH 73 574 574 HOH HOH A . G 4 HOH 74 575 575 HOH HOH A . G 4 HOH 75 576 576 HOH HOH A . G 4 HOH 76 577 577 HOH HOH A . G 4 HOH 77 578 578 HOH HOH A . G 4 HOH 78 579 579 HOH HOH A . G 4 HOH 79 580 580 HOH HOH A . G 4 HOH 80 581 581 HOH HOH A . G 4 HOH 81 582 582 HOH HOH A . G 4 HOH 82 583 583 HOH HOH A . G 4 HOH 83 584 584 HOH HOH A . G 4 HOH 84 585 585 HOH HOH A . G 4 HOH 85 586 586 HOH HOH A . G 4 HOH 86 587 587 HOH HOH A . G 4 HOH 87 588 588 HOH HOH A . G 4 HOH 88 589 589 HOH HOH A . G 4 HOH 89 590 590 HOH HOH A . G 4 HOH 90 591 591 HOH HOH A . G 4 HOH 91 592 592 HOH HOH A . G 4 HOH 92 593 593 HOH HOH A . G 4 HOH 93 594 594 HOH HOH A . G 4 HOH 94 595 595 HOH HOH A . G 4 HOH 95 596 596 HOH HOH A . G 4 HOH 96 597 597 HOH HOH A . G 4 HOH 97 598 598 HOH HOH A . G 4 HOH 98 599 599 HOH HOH A . G 4 HOH 99 600 600 HOH HOH A . G 4 HOH 100 601 601 HOH HOH A . G 4 HOH 101 602 602 HOH HOH A . G 4 HOH 102 603 603 HOH HOH A . G 4 HOH 103 604 604 HOH HOH A . G 4 HOH 104 605 605 HOH HOH A . G 4 HOH 105 606 606 HOH HOH A . G 4 HOH 106 607 607 HOH HOH A . G 4 HOH 107 608 608 HOH HOH A . G 4 HOH 108 609 609 HOH HOH A . G 4 HOH 109 610 610 HOH HOH A . G 4 HOH 110 611 611 HOH HOH A . G 4 HOH 111 612 612 HOH HOH A . G 4 HOH 112 614 614 HOH HOH A . G 4 HOH 113 615 615 HOH HOH A . G 4 HOH 114 617 617 HOH HOH A . G 4 HOH 115 618 618 HOH HOH A . G 4 HOH 116 619 619 HOH HOH A . G 4 HOH 117 620 620 HOH HOH A . G 4 HOH 118 621 621 HOH HOH A . G 4 HOH 119 622 622 HOH HOH A . G 4 HOH 120 624 624 HOH HOH A . G 4 HOH 121 626 626 HOH HOH A . G 4 HOH 122 627 627 HOH HOH A . G 4 HOH 123 628 628 HOH HOH A . G 4 HOH 124 630 630 HOH HOH A . G 4 HOH 125 631 631 HOH HOH A . G 4 HOH 126 632 632 HOH HOH A . G 4 HOH 127 633 633 HOH HOH A . G 4 HOH 128 634 634 HOH HOH A . G 4 HOH 129 635 635 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 182 A ASN 182 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 233 A ASN 233 ? ASN 'GLYCOSYLATION SITE' 3 A ASN 274 A ASN 274 ? ASN 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 64.7600000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 500 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id G _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-11-02 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' entity 3 4 'Structure model' pdbx_chem_comp_identifier 4 4 'Structure model' pdbx_entity_nonpoly 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site 7 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.name' 2 4 'Structure model' '_chem_comp.type' 3 4 'Structure model' '_entity.pdbx_description' 4 4 'Structure model' '_pdbx_entity_nonpoly.name' 5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 4 'Structure model' '_struct_conn.pdbx_role' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 MOSFLM 'data reduction' . ? 2 CCP4 'data scaling' '(TRUNCATE)' ? 3 SHARP phasing . ? 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 ND2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASN _pdbx_validate_close_contact.auth_seq_id_1 85 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 544 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.08 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 CYS _pdbx_validate_rmsd_angle.auth_seq_id_1 29 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 CYS _pdbx_validate_rmsd_angle.auth_seq_id_2 29 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 SG _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 CYS _pdbx_validate_rmsd_angle.auth_seq_id_3 29 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 121.93 _pdbx_validate_rmsd_angle.angle_target_value 114.20 _pdbx_validate_rmsd_angle.angle_deviation 7.73 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 28 ? ? 89.49 -20.79 2 1 ASN A 62 ? ? -128.08 -164.80 3 1 LEU A 75 ? ? -114.32 60.81 4 1 ASN A 86 ? ? -125.90 -156.95 5 1 VAL A 100 ? ? -58.58 -7.77 6 1 LYS A 118 ? ? 50.12 76.10 7 1 ASN A 131 ? ? -126.38 -149.96 8 1 THR A 181 ? ? -122.37 -165.21 9 1 ASN A 202 ? ? -105.14 -146.32 10 1 ASN A 226 ? ? -122.36 -159.06 11 1 ASN A 250 ? ? -130.70 -158.88 12 1 PRO A 286 ? ? -40.22 -70.76 13 1 PHE A 301 ? ? -56.39 177.40 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASP 1 ? A ASP 1 2 1 Y 1 A GLU 2 ? A GLU 2 3 1 Y 1 A ALA 3 ? A ALA 3 4 1 Y 1 A SER 4 ? A SER 4 5 1 Y 1 A GLY 5 ? A GLY 5 6 1 Y 1 A ILE 6 ? A ILE 6 7 1 Y 1 A GLY 7 ? A GLY 7 8 1 Y 1 A PRO 8 ? A PRO 8 9 1 Y 1 A GLU 9 ? A GLU 9 10 1 Y 1 A GLU 10 ? A GLU 10 11 1 Y 1 A HIS 11 ? A HIS 11 12 1 Y 1 A PHE 12 ? A PHE 12 13 1 Y 1 A PRO 13 ? A PRO 13 14 1 Y 1 A GLU 14 ? A GLU 14 15 1 Y 1 A VAL 15 ? A VAL 15 16 1 Y 1 A PRO 16 ? A PRO 16 17 1 Y 1 A GLU 17 ? A GLU 17 18 1 Y 1 A ILE 18 ? A ILE 18 19 1 Y 1 A GLU 19 ? A GLU 19 20 1 Y 1 A PRO 20 ? A PRO 20 21 1 Y 1 A MET 21 ? A MET 21 22 1 Y 1 A GLY 327 ? A GLY 327 23 1 Y 1 A ASN 328 ? A ASN 328 24 1 Y 1 A TYR 329 ? A TYR 329 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 3 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL TRS 4 water HOH #