HEADER SIGNALING PROTEIN ACTIVATOR/SIGNALING PR01-SEP-04 1XCG TITLE CRYSTAL STRUCTURE OF HUMAN RHOA IN COMPLEX WITH DH/PH FRAGMENT OF TITLE 2 PDZRHOGEF COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 11; COMPND 3 CHAIN: A, E; COMPND 4 FRAGMENT: DH/PH DOMAIN; COMPND 5 SYNONYM: PDZ-RHOGEF; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TRANSFORMING PROTEIN RHOA; COMPND 9 CHAIN: B, F; COMPND 10 FRAGMENT: RHOA; COMPND 11 SYNONYM: H12; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ARHGEF11, KIAA0380; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: RHOA, ARHA, ARH12, RHO12; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS X-RAY CRYSTALLOGRAPHY; REGULATION OF RHOA GTPASE; PROTEIN COMPLEX, KEYWDS 2 SIGNALING PROTEIN ACTIVATOR-SIGNALING PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR U.DEREWENDA,A.OLEKSY,A.S.STEVENSON,J.KORCZYNSKA,Z.DAUTER,A.P.SOMLYO, AUTHOR 2 J.OTLEWSKI,A.V.SOMLYO,Z.S.DEREWENDA REVDAT 4 14-FEB-24 1XCG 1 REMARK REVDAT 3 20-OCT-21 1XCG 1 SEQADV REVDAT 2 24-FEB-09 1XCG 1 VERSN REVDAT 1 14-DEC-04 1XCG 0 JRNL AUTH U.DEREWENDA,A.OLEKSY,A.S.STEVENSON,J.KORCZYNSKA,Z.DAUTER, JRNL AUTH 2 A.P.SOMLYO,J.OTLEWSKI,A.V.SOMLYO,Z.S.DEREWENDA JRNL TITL THE CRYSTAL STRUCTURE OF RHOA IN COMPLEX WITH THE DH/PH JRNL TITL 2 FRAGMENT OF PDZRHOGEF, AN ACTIVATOR OF THE CA(2+) JRNL TITL 3 SENSITIZATION PATHWAY IN SMOOTH MUSCLE JRNL REF STRUCTURE V. 12 1955 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15530360 JRNL DOI 10.1016/J.STR.2004.09.003 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 57314 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2899 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3740 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3330 REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8659 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.67000 REMARK 3 B22 (A**2) : -4.59000 REMARK 3 B33 (A**2) : 3.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.12000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.372 REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8802 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11866 ; 1.268 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1063 ; 5.670 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1345 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6520 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3913 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 297 ; 0.161 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 51 ; 0.232 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.201 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5351 ; 0.492 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8672 ; 0.970 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3451 ; 1.583 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3194 ; 2.682 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 3 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A E REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 714 A 932 6 REMARK 3 1 E 714 E 932 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 1821 ; 0.38 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 1821 ; 1.92 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : B F REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 3 B 180 6 REMARK 3 1 F 3 F 180 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 2 B (A): 1411 ; 0.41 ; 5.00 REMARK 3 LOOSE THERMAL 2 B (A**2): 1411 ; 1.51 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A E REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 933 A 1081 6 REMARK 3 1 E 933 E 1081 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 3 A (A): 1085 ; 0.72 ; 5.00 REMARK 3 LOOSE THERMAL 3 A (A**2): 1085 ; 1.83 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1XCG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000030201. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-04; NULL; NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : NULL; NULL; NULL; NULL REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y; Y; Y REMARK 200 RADIATION SOURCE : NSLS; NSLS; NSLS; APS REMARK 200 BEAMLINE : X9B; X9B; X9B; 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL; NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M; NULL; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790; 0.97919; 0.97178; 1.00 REMARK 200 MONOCHROMATOR : GRAPHITE; GRAPHITE; NULL; NULL REMARK 200 OPTICS : NULL; NULL; NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL; NULL; NULL REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; NULL; NULL; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57314 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; SINGLE WAVELENGTH; NULL; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG, HEPES, PH 7.2, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 59.39100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 1008 REMARK 465 SER A 1009 REMARK 465 LYS A 1010 REMARK 465 THR A 1011 REMARK 465 ALA A 1012 REMARK 465 VAL A 1013 REMARK 465 GLY A 1014 REMARK 465 SER A 1015 REMARK 465 SER A 1016 REMARK 465 ASP A 1017 REMARK 465 SER A 1018 REMARK 465 LYS A 1019 REMARK 465 GLN A 1020 REMARK 465 THR E 1011 REMARK 465 ALA E 1012 REMARK 465 VAL E 1013 REMARK 465 GLY E 1014 REMARK 465 SER E 1015 REMARK 465 SER E 1016 REMARK 465 ASP E 1017 REMARK 465 SER E 1018 REMARK 465 LYS E 1019 REMARK 465 GLN E 1020 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 122 OE1 GLU B 158 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A1000 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP B 65 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 LEU B 81 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 ASP E 723 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP F 90 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 719 -106.27 -106.10 REMARK 500 PHE A 760 -72.36 -108.13 REMARK 500 ASN A 781 46.39 -157.77 REMARK 500 LYS A 807 -121.57 -85.32 REMARK 500 ALA A 944 10.14 -65.71 REMARK 500 ALA A 948 -162.59 57.22 REMARK 500 PRO A 951 4.66 -64.50 REMARK 500 LEU A 959 -64.12 -21.90 REMARK 500 ASP A 960 90.91 56.71 REMARK 500 ARG A 975 86.34 -67.41 REMARK 500 SER A 977 -146.30 -128.16 REMARK 500 ASP A1000 -55.15 -168.90 REMARK 500 PRO A1053 173.51 -47.76 REMARK 500 PRO A1054 56.96 -44.08 REMARK 500 ALA B 15 12.17 48.94 REMARK 500 PRO B 31 107.42 -59.11 REMARK 500 GLU B 32 -72.91 -70.67 REMARK 500 ASN B 41 116.14 -27.42 REMARK 500 LYS B 164 -13.78 83.28 REMARK 500 THR E 719 -90.99 -124.72 REMARK 500 LYS E 722 -66.14 -157.77 REMARK 500 PHE E 760 -72.33 -111.04 REMARK 500 ASN E 781 45.45 -151.16 REMARK 500 GLU E 802 49.88 -90.92 REMARK 500 LYS E 807 -119.46 -95.97 REMARK 500 LYS E 938 6.60 -65.47 REMARK 500 ARG E 947 54.63 -141.87 REMARK 500 ASP E 960 93.27 63.67 REMARK 500 ARG E 975 68.89 -100.29 REMARK 500 ASP E 979 12.47 80.90 REMARK 500 GLN E 999 -91.86 -119.91 REMARK 500 ASP E1000 -85.93 -118.62 REMARK 500 THR E1038 -18.09 -48.64 REMARK 500 LYS E1050 117.86 70.48 REMARK 500 ALA F 15 6.70 56.69 REMARK 500 GLN F 29 99.72 -170.09 REMARK 500 PHE F 30 129.73 -29.34 REMARK 500 ASN F 41 127.36 -29.90 REMARK 500 LYS F 162 -73.29 -52.53 REMARK 500 REMARK 500 REMARK: NULL DBREF 1XCG A 714 1081 UNP O15085 ARHGB_HUMAN 714 1081 DBREF 1XCG E 714 1081 UNP O15085 ARHGB_HUMAN 714 1081 DBREF 1XCG B 3 180 UNP P61586 RHOA_HUMAN 3 180 DBREF 1XCG F 3 180 UNP P61586 RHOA_HUMAN 3 180 SEQADV 1XCG ASN B 25 UNP P61586 PHE 25 ENGINEERED MUTATION SEQADV 1XCG ASN F 25 UNP P61586 PHE 25 ENGINEERED MUTATION SEQRES 1 A 368 GLN ASN TRP GLN HIS THR VAL GLY LYS ASP VAL VAL ALA SEQRES 2 A 368 GLY LEU THR GLN ARG GLU ILE ASP ARG GLN GLU VAL ILE SEQRES 3 A 368 ASN GLU LEU PHE VAL THR GLU ALA SER HIS LEU ARG THR SEQRES 4 A 368 LEU ARG VAL LEU ASP LEU ILE PHE TYR GLN ARG MET LYS SEQRES 5 A 368 LYS GLU ASN LEU MET PRO ARG GLU GLU LEU ALA ARG LEU SEQRES 6 A 368 PHE PRO ASN LEU PRO GLU LEU ILE GLU ILE HIS ASN SER SEQRES 7 A 368 TRP CYS GLU ALA MET LYS LYS LEU ARG GLU GLU GLY PRO SEQRES 8 A 368 ILE ILE LYS GLU ILE SER ASP LEU MET LEU ALA ARG PHE SEQRES 9 A 368 ASP GLY PRO ALA ARG GLU GLU LEU GLN GLN VAL ALA ALA SEQRES 10 A 368 GLN PHE CYS SER TYR GLN SER ILE ALA LEU GLU LEU ILE SEQRES 11 A 368 LYS THR LYS GLN ARG LYS GLU SER ARG PHE GLN LEU PHE SEQRES 12 A 368 MET GLN GLU ALA GLU SER HIS PRO GLN CYS ARG ARG LEU SEQRES 13 A 368 GLN LEU ARG ASP LEU ILE ILE SER GLU MET GLN ARG LEU SEQRES 14 A 368 THR LYS TYR PRO LEU LEU LEU GLU SER ILE ILE LYS HIS SEQRES 15 A 368 THR GLU GLY GLY THR SER GLU HIS GLU LYS LEU CYS ARG SEQRES 16 A 368 ALA ARG ASP GLN CYS ARG GLU ILE LEU LYS TYR VAL ASN SEQRES 17 A 368 GLU ALA VAL LYS GLN THR GLU ASN ARG HIS ARG LEU GLU SEQRES 18 A 368 GLY TYR GLN LYS ARG LEU ASP ALA THR ALA LEU GLU ARG SEQRES 19 A 368 ALA SER ASN PRO LEU ALA ALA GLU PHE LYS SER LEU ASP SEQRES 20 A 368 LEU THR THR ARG LYS MET ILE HIS GLU GLY PRO LEU THR SEQRES 21 A 368 TRP ARG ILE SER LYS ASP LYS THR LEU ASP LEU HIS VAL SEQRES 22 A 368 LEU LEU LEU GLU ASP LEU LEU VAL LEU LEU GLN LYS GLN SEQRES 23 A 368 ASP GLU LYS LEU LEU LEU LYS CYS HIS SER LYS THR ALA SEQRES 24 A 368 VAL GLY SER SER ASP SER LYS GLN THR PHE SER PRO VAL SEQRES 25 A 368 LEU LYS LEU ASN ALA VAL LEU ILE ARG SER VAL ALA THR SEQRES 26 A 368 ASP LYS ARG ALA PHE PHE ILE ILE CYS THR SER LYS LEU SEQRES 27 A 368 GLY PRO PRO GLN ILE TYR GLU LEU VAL ALA LEU THR SER SEQRES 28 A 368 SER ASP LYS ASN THR TRP MET GLU LEU LEU GLU GLU ALA SEQRES 29 A 368 VAL ARG ASN ALA SEQRES 1 B 178 ALA ILE ARG LYS LYS LEU VAL ILE VAL GLY ASP GLY ALA SEQRES 2 B 178 CYS GLY LYS THR CYS LEU LEU ILE VAL ASN SER LYS ASP SEQRES 3 B 178 GLN PHE PRO GLU VAL TYR VAL PRO THR VAL PHE GLU ASN SEQRES 4 B 178 TYR VAL ALA ASP ILE GLU VAL ASP GLY LYS GLN VAL GLU SEQRES 5 B 178 LEU ALA LEU TRP ASP THR ALA GLY GLN GLU ASP TYR ASP SEQRES 6 B 178 ARG LEU ARG PRO LEU SER TYR PRO ASP THR ASP VAL ILE SEQRES 7 B 178 LEU MET CYS PHE SER ILE ASP SER PRO ASP SER LEU GLU SEQRES 8 B 178 ASN ILE PRO GLU LYS TRP THR PRO GLU VAL LYS HIS PHE SEQRES 9 B 178 CYS PRO ASN VAL PRO ILE ILE LEU VAL GLY ASN LYS LYS SEQRES 10 B 178 ASP LEU ARG ASN ASP GLU HIS THR ARG ARG GLU LEU ALA SEQRES 11 B 178 LYS MET LYS GLN GLU PRO VAL LYS PRO GLU GLU GLY ARG SEQRES 12 B 178 ASP MET ALA ASN ARG ILE GLY ALA PHE GLY TYR MET GLU SEQRES 13 B 178 CYS SER ALA LYS THR LYS ASP GLY VAL ARG GLU VAL PHE SEQRES 14 B 178 GLU MET ALA THR ARG ALA ALA LEU GLN SEQRES 1 E 368 GLN ASN TRP GLN HIS THR VAL GLY LYS ASP VAL VAL ALA SEQRES 2 E 368 GLY LEU THR GLN ARG GLU ILE ASP ARG GLN GLU VAL ILE SEQRES 3 E 368 ASN GLU LEU PHE VAL THR GLU ALA SER HIS LEU ARG THR SEQRES 4 E 368 LEU ARG VAL LEU ASP LEU ILE PHE TYR GLN ARG MET LYS SEQRES 5 E 368 LYS GLU ASN LEU MET PRO ARG GLU GLU LEU ALA ARG LEU SEQRES 6 E 368 PHE PRO ASN LEU PRO GLU LEU ILE GLU ILE HIS ASN SER SEQRES 7 E 368 TRP CYS GLU ALA MET LYS LYS LEU ARG GLU GLU GLY PRO SEQRES 8 E 368 ILE ILE LYS GLU ILE SER ASP LEU MET LEU ALA ARG PHE SEQRES 9 E 368 ASP GLY PRO ALA ARG GLU GLU LEU GLN GLN VAL ALA ALA SEQRES 10 E 368 GLN PHE CYS SER TYR GLN SER ILE ALA LEU GLU LEU ILE SEQRES 11 E 368 LYS THR LYS GLN ARG LYS GLU SER ARG PHE GLN LEU PHE SEQRES 12 E 368 MET GLN GLU ALA GLU SER HIS PRO GLN CYS ARG ARG LEU SEQRES 13 E 368 GLN LEU ARG ASP LEU ILE ILE SER GLU MET GLN ARG LEU SEQRES 14 E 368 THR LYS TYR PRO LEU LEU LEU GLU SER ILE ILE LYS HIS SEQRES 15 E 368 THR GLU GLY GLY THR SER GLU HIS GLU LYS LEU CYS ARG SEQRES 16 E 368 ALA ARG ASP GLN CYS ARG GLU ILE LEU LYS TYR VAL ASN SEQRES 17 E 368 GLU ALA VAL LYS GLN THR GLU ASN ARG HIS ARG LEU GLU SEQRES 18 E 368 GLY TYR GLN LYS ARG LEU ASP ALA THR ALA LEU GLU ARG SEQRES 19 E 368 ALA SER ASN PRO LEU ALA ALA GLU PHE LYS SER LEU ASP SEQRES 20 E 368 LEU THR THR ARG LYS MET ILE HIS GLU GLY PRO LEU THR SEQRES 21 E 368 TRP ARG ILE SER LYS ASP LYS THR LEU ASP LEU HIS VAL SEQRES 22 E 368 LEU LEU LEU GLU ASP LEU LEU VAL LEU LEU GLN LYS GLN SEQRES 23 E 368 ASP GLU LYS LEU LEU LEU LYS CYS HIS SER LYS THR ALA SEQRES 24 E 368 VAL GLY SER SER ASP SER LYS GLN THR PHE SER PRO VAL SEQRES 25 E 368 LEU LYS LEU ASN ALA VAL LEU ILE ARG SER VAL ALA THR SEQRES 26 E 368 ASP LYS ARG ALA PHE PHE ILE ILE CYS THR SER LYS LEU SEQRES 27 E 368 GLY PRO PRO GLN ILE TYR GLU LEU VAL ALA LEU THR SER SEQRES 28 E 368 SER ASP LYS ASN THR TRP MET GLU LEU LEU GLU GLU ALA SEQRES 29 E 368 VAL ARG ASN ALA SEQRES 1 F 178 ALA ILE ARG LYS LYS LEU VAL ILE VAL GLY ASP GLY ALA SEQRES 2 F 178 CYS GLY LYS THR CYS LEU LEU ILE VAL ASN SER LYS ASP SEQRES 3 F 178 GLN PHE PRO GLU VAL TYR VAL PRO THR VAL PHE GLU ASN SEQRES 4 F 178 TYR VAL ALA ASP ILE GLU VAL ASP GLY LYS GLN VAL GLU SEQRES 5 F 178 LEU ALA LEU TRP ASP THR ALA GLY GLN GLU ASP TYR ASP SEQRES 6 F 178 ARG LEU ARG PRO LEU SER TYR PRO ASP THR ASP VAL ILE SEQRES 7 F 178 LEU MET CYS PHE SER ILE ASP SER PRO ASP SER LEU GLU SEQRES 8 F 178 ASN ILE PRO GLU LYS TRP THR PRO GLU VAL LYS HIS PHE SEQRES 9 F 178 CYS PRO ASN VAL PRO ILE ILE LEU VAL GLY ASN LYS LYS SEQRES 10 F 178 ASP LEU ARG ASN ASP GLU HIS THR ARG ARG GLU LEU ALA SEQRES 11 F 178 LYS MET LYS GLN GLU PRO VAL LYS PRO GLU GLU GLY ARG SEQRES 12 F 178 ASP MET ALA ASN ARG ILE GLY ALA PHE GLY TYR MET GLU SEQRES 13 F 178 CYS SER ALA LYS THR LYS ASP GLY VAL ARG GLU VAL PHE SEQRES 14 F 178 GLU MET ALA THR ARG ALA ALA LEU GLN FORMUL 5 HOH *91(H2 O) HELIX 1 1 VAL A 724 LEU A 728 5 5 HELIX 2 2 THR A 729 PHE A 760 1 32 HELIX 3 3 PHE A 760 GLU A 767 1 8 HELIX 4 4 PRO A 771 PHE A 779 1 9 HELIX 5 5 ASN A 781 GLU A 802 1 22 HELIX 6 6 ILE A 809 ASP A 818 1 10 HELIX 7 7 ASP A 818 SER A 834 1 17 HELIX 8 8 TYR A 835 GLU A 850 1 16 HELIX 9 9 GLU A 850 SER A 862 1 13 HELIX 10 10 HIS A 863 ARG A 867 5 5 HELIX 11 11 GLN A 870 ILE A 875 1 6 HELIX 12 12 ILE A 876 HIS A 895 1 20 HELIX 13 13 THR A 900 ARG A 939 1 40 HELIX 14 14 ALA A 953 LEU A 959 5 7 HELIX 15 15 ASP A 960 ARG A 964 5 5 HELIX 16 16 THR A 1063 ALA A 1081 1 19 HELIX 17 17 GLY B 17 ASP B 28 1 12 HELIX 18 18 LEU B 69 TYR B 74 5 6 HELIX 19 19 SER B 88 LYS B 98 1 11 HELIX 20 20 LYS B 98 CYS B 107 1 10 HELIX 21 21 LYS B 118 ARG B 122 5 5 HELIX 22 22 ASP B 124 MET B 134 1 11 HELIX 23 23 LYS B 140 ILE B 151 1 12 HELIX 24 24 GLY B 166 GLN B 180 1 15 HELIX 25 25 ASN E 715 THR E 719 5 5 HELIX 26 26 VAL E 724 LEU E 728 5 5 HELIX 27 27 THR E 729 PHE E 760 1 32 HELIX 28 28 PHE E 760 GLU E 767 1 8 HELIX 29 29 PRO E 771 PHE E 779 1 9 HELIX 30 30 ASN E 781 GLU E 802 1 22 HELIX 31 31 ILE E 809 ASP E 818 1 10 HELIX 32 32 GLY E 819 SER E 834 1 16 HELIX 33 33 TYR E 835 GLU E 850 1 16 HELIX 34 34 GLU E 850 SER E 862 1 13 HELIX 35 35 HIS E 863 ARG E 867 5 5 HELIX 36 36 GLN E 870 ILE E 875 1 6 HELIX 37 37 ILE E 876 HIS E 895 1 20 HELIX 38 38 THR E 900 LYS E 938 1 39 HELIX 39 39 ASN E 950 GLU E 955 1 6 HELIX 40 40 ASP E 960 ARG E 964 5 5 HELIX 41 41 THR E 1063 ALA E 1081 1 19 HELIX 42 42 GLY F 17 LYS F 27 1 11 HELIX 43 43 LEU F 69 TYR F 74 5 6 HELIX 44 44 SER F 88 LYS F 98 1 11 HELIX 45 45 LYS F 98 CYS F 107 1 10 HELIX 46 46 LYS F 118 ARG F 122 5 5 HELIX 47 47 ASP F 124 LYS F 133 1 10 HELIX 48 48 LYS F 140 ILE F 151 1 12 HELIX 49 49 GLY F 166 GLN F 180 1 15 SHEET 1 A 4 LEU A 940 ASP A 941 0 SHEET 2 A 4 LEU A1003 LEU A1004 1 O LEU A1003 N ASP A 941 SHEET 3 A 4 LEU A 992 LYS A 998 -1 N GLN A 997 O LEU A1004 SHEET 4 A 4 VAL A1025 LYS A1027 -1 O LEU A1026 N LEU A 993 SHEET 1 B 8 LEU A 940 ASP A 941 0 SHEET 2 B 8 LEU A1003 LEU A1004 1 O LEU A1003 N ASP A 941 SHEET 3 B 8 LEU A 992 LYS A 998 -1 N GLN A 997 O LEU A1004 SHEET 4 B 8 ASP A 983 LEU A 989 -1 N LEU A 989 O LEU A 992 SHEET 5 B 8 MET A 966 TRP A 974 -1 N LEU A 972 O LEU A 984 SHEET 6 B 8 ILE A1056 VAL A1060 -1 O VAL A1060 N THR A 973 SHEET 7 B 8 ALA A1042 CYS A1047 -1 N PHE A1043 O LEU A1059 SHEET 8 B 8 VAL A1031 SER A1035 -1 N ARG A1034 O PHE A1044 SHEET 1 C 6 TYR B 42 VAL B 48 0 SHEET 2 C 6 LYS B 51 TRP B 58 -1 O LEU B 57 N TYR B 42 SHEET 3 C 6 ILE B 4 VAL B 11 1 N LYS B 6 O ALA B 56 SHEET 4 C 6 VAL B 79 SER B 85 1 O CYS B 83 N VAL B 11 SHEET 5 C 6 ILE B 112 ASN B 117 1 O VAL B 115 N MET B 82 SHEET 6 C 6 GLY B 155 GLU B 158 1 O MET B 157 N LEU B 114 SHEET 1 D 4 LEU E 940 ASP E 941 0 SHEET 2 D 4 LEU E1003 LEU E1004 1 O LEU E1003 N ASP E 941 SHEET 3 D 4 LEU E 992 LYS E 998 -1 N GLN E 997 O LEU E1004 SHEET 4 D 4 VAL E1025 LYS E1027 -1 O LEU E1026 N LEU E 993 SHEET 1 E 8 LEU E 940 ASP E 941 0 SHEET 2 E 8 LEU E1003 LEU E1004 1 O LEU E1003 N ASP E 941 SHEET 3 E 8 LEU E 992 LYS E 998 -1 N GLN E 997 O LEU E1004 SHEET 4 E 8 LYS E 980 LEU E 989 -1 N LEU E 987 O VAL E 994 SHEET 5 E 8 MET E 966 SER E 977 -1 N TRP E 974 O LEU E 982 SHEET 6 E 8 GLN E1055 VAL E1060 -1 O VAL E1060 N THR E 973 SHEET 7 E 8 ALA E1042 CYS E1047 -1 N PHE E1043 O LEU E1059 SHEET 8 E 8 VAL E1031 SER E1035 -1 N ARG E1034 O PHE E1044 SHEET 1 F 6 TYR F 42 VAL F 48 0 SHEET 2 F 6 LYS F 51 TRP F 58 -1 O LEU F 57 N TYR F 42 SHEET 3 F 6 ILE F 4 VAL F 11 1 N ILE F 4 O GLU F 54 SHEET 4 F 6 VAL F 79 SER F 85 1 O LEU F 81 N VAL F 11 SHEET 5 F 6 ILE F 112 ASN F 117 1 O VAL F 115 N MET F 82 SHEET 6 F 6 GLY F 155 GLU F 158 1 O MET F 157 N GLY F 116 CRYST1 89.236 118.782 90.130 90.00 114.34 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011206 0.000000 0.005069 0.00000 SCALE2 0.000000 0.008419 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012177 0.00000