HEADER SIGNALING PROTEIN 02-SEP-04 1XCM TITLE CRYSTAL STRUCTURE OF THE GPPNHP-BOUND H-RAS G60A MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSFORMING PROTEIN P21/H-RAS-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: C-H-RAS; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPROEX-HTB KEYWDS GTP-BINDING PROTEIN, RAS, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.FORD,N.NASSAR REVDAT 5 15-NOV-23 1XCM 1 REMARK REVDAT 4 23-AUG-23 1XCM 1 REMARK REVDAT 3 20-OCT-21 1XCM 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1XCM 1 VERSN REVDAT 1 10-MAY-05 1XCM 0 JRNL AUTH B.FORD,N.NASSAR JRNL TITL CRYSTAL STRUCTURE OF THE GPPNHP-BOUND FORM OF THE RASG60A JRNL TITL 2 MUTANT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 13925 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 739 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.84 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.89 REMARK 3 REFLECTION IN BIN (WORKING SET) : 890 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.4310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1333 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 113 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.152 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.152 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.975 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1419 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1250 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1918 ; 1.557 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2920 ; 1.844 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 166 ; 5.852 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 209 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1550 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 282 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 292 ; 0.194 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1516 ; 0.241 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 863 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 81 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.209 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 56 ; 0.288 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.174 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 827 ; 0.835 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1341 ; 1.563 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 592 ; 2.401 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 577 ; 3.935 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 40 REMARK 3 ORIGIN FOR THE GROUP (A): 2.4442 13.8072 31.2941 REMARK 3 T TENSOR REMARK 3 T11: 0.2646 T22: 0.2090 REMARK 3 T33: 0.2440 T12: 0.0236 REMARK 3 T13: -0.0221 T23: 0.0619 REMARK 3 L TENSOR REMARK 3 L11: 10.6358 L22: 0.4089 REMARK 3 L33: 6.5342 L12: 3.9416 REMARK 3 L13: 6.6613 L23: 2.6418 REMARK 3 S TENSOR REMARK 3 S11: 0.3263 S12: -0.4375 S13: -1.0241 REMARK 3 S21: 0.1087 S22: 0.0271 S23: -0.2443 REMARK 3 S31: 0.4746 S32: -0.1145 S33: -0.3533 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 57 A 76 REMARK 3 ORIGIN FOR THE GROUP (A): 18.3076 21.8616 38.7222 REMARK 3 T TENSOR REMARK 3 T11: 0.2509 T22: 0.2700 REMARK 3 T33: 0.1912 T12: 0.0105 REMARK 3 T13: 0.0165 T23: 0.0355 REMARK 3 L TENSOR REMARK 3 L11: 3.4706 L22: 2.3528 REMARK 3 L33: 2.3015 L12: -0.1665 REMARK 3 L13: -2.6466 L23: 1.4466 REMARK 3 S TENSOR REMARK 3 S11: -0.1384 S12: 0.0562 S13: 0.2091 REMARK 3 S21: -0.2722 S22: 0.1137 S23: -0.2596 REMARK 3 S31: -0.0093 S32: 0.3044 S33: 0.0247 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 41 A 56 REMARK 3 ORIGIN FOR THE GROUP (A): -2.3917 28.2227 39.9690 REMARK 3 T TENSOR REMARK 3 T11: 0.0540 T22: 0.0686 REMARK 3 T33: 0.1375 T12: -0.0531 REMARK 3 T13: -0.0041 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 9.2018 L22: -3.1867 REMARK 3 L33: 3.3359 L12: -0.0410 REMARK 3 L13: -2.1914 L23: -1.5256 REMARK 3 S TENSOR REMARK 3 S11: 0.1486 S12: 0.4889 S13: 0.3921 REMARK 3 S21: 0.1261 S22: 0.0567 S23: -0.0974 REMARK 3 S31: 0.2221 S32: -0.1848 S33: -0.2054 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 41 A 56 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3199 27.6519 39.0429 REMARK 3 T TENSOR REMARK 3 T11: 0.1776 T22: 0.1549 REMARK 3 T33: 0.1752 T12: 0.0046 REMARK 3 T13: 0.0048 T23: 0.0793 REMARK 3 L TENSOR REMARK 3 L11: 8.7943 L22: 0.3256 REMARK 3 L33: 1.8239 L12: -2.1119 REMARK 3 L13: -3.3706 L23: 2.2404 REMARK 3 S TENSOR REMARK 3 S11: 0.2777 S12: 0.3190 S13: -0.0603 REMARK 3 S21: -0.4759 S22: -0.2388 S23: 0.0591 REMARK 3 S31: -0.3751 S32: -0.0815 S33: -0.0389 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 23 REMARK 3 RESIDUE RANGE : A 1 A 23 REMARK 3 ORIGIN FOR THE GROUP (A): 5.8694 19.8224 41.0332 REMARK 3 T TENSOR REMARK 3 T11: 0.1757 T22: 0.1803 REMARK 3 T33: 0.1486 T12: 0.0035 REMARK 3 T13: -0.0065 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 0.8116 L22: 2.7482 REMARK 3 L33: 1.2620 L12: 0.4543 REMARK 3 L13: 0.2080 L23: -0.0362 REMARK 3 S TENSOR REMARK 3 S11: -0.0007 S12: 0.0169 S13: 0.0822 REMARK 3 S21: -0.2684 S22: -0.0233 S23: 0.0617 REMARK 3 S31: 0.0693 S32: -0.0562 S33: 0.0241 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 77 A 167 REMARK 3 RESIDUE RANGE : A 77 A 167 REMARK 3 ORIGIN FOR THE GROUP (A): 8.4048 17.7687 51.9301 REMARK 3 T TENSOR REMARK 3 T11: 0.1451 T22: 0.1640 REMARK 3 T33: 0.1668 T12: -0.0135 REMARK 3 T13: -0.0108 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.8885 L22: 1.7637 REMARK 3 L33: 0.9106 L12: 0.4412 REMARK 3 L13: 0.0474 L23: -0.2525 REMARK 3 S TENSOR REMARK 3 S11: 0.0064 S12: -0.0474 S13: 0.0156 REMARK 3 S21: -0.0091 S22: -0.0092 S23: -0.0330 REMARK 3 S31: 0.0385 S32: -0.0101 S33: 0.0027 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 170 A 171 REMARK 3 ORIGIN FOR THE GROUP (A): 7.2143 6.7259 41.2509 REMARK 3 T TENSOR REMARK 3 T11: 0.2255 T22: 0.1402 REMARK 3 T33: 0.1526 T12: -0.0416 REMARK 3 T13: 0.0009 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 3.0386 L22: 6.1549 REMARK 3 L33: 12.1737 L12: 3.6398 REMARK 3 L13: -6.5406 L23: -5.6835 REMARK 3 S TENSOR REMARK 3 S11: -0.3642 S12: 0.5719 S13: -0.2969 REMARK 3 S21: -0.3600 S22: 0.2550 S23: -0.3102 REMARK 3 S31: 0.5903 S32: -0.4247 S33: 0.1092 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1XCM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-SEP-04. REMARK 100 THE DEPOSITION ID IS D_1000030206. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X26C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14668 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.57300 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 5P21 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 2000 MME, MAGNESIUM SULFATE, REMARK 280 HEPES, HYDROGEN PEROXIDE, PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 17.14600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.70950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 60.65100 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 17.14600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.70950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.65100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 17.14600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.70950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 60.65100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 17.14600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 40.70950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 60.65100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 172 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 263 LIES ON A SPECIAL POSITION. REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASP A 33 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 33 CB ASP A 33 CG -0.330 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 33 CA - CB - CG ANGL. DEV. = 44.4 DEGREES REMARK 500 TYR A 71 CA - CB - CG ANGL. DEV. = 12.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 27 13.10 59.93 REMARK 500 LYS A 117 33.96 73.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASP A 33 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 171 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GNP A 170 O2B 89.1 REMARK 620 3 GNP A 170 O2G 174.5 90.5 REMARK 620 4 HOH A 184 O 82.6 94.7 91.9 REMARK 620 5 HOH A 233 O 88.7 90.5 96.8 169.9 REMARK 620 6 HOH A 234 O 90.9 177.8 89.7 87.5 87.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 172 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 253 O REMARK 620 2 HOH A 253 O 170.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 171 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 172 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 170 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5P21 RELATED DB: PDB REMARK 900 STRUCTURE OF THE WILD TYPE RAS IN COMPLEX WITH GPPNP REMARK 900 RELATED ID: 1BKD RELATED DB: PDB REMARK 900 STRUCTURE OF THE RAS/SOS COMPLEX DBREF 1XCM A 1 167 UNP P01112 RASH_HUMAN 1 167 SEQADV 1XCM ALA A 60 UNP P01112 GLY 60 ENGINEERED MUTATION SEQADV 1XCM CSO A 118 UNP P01112 CYS 118 MODIFIED RESIDUE SEQRES 1 A 167 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY GLY SEQRES 2 A 167 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 A 167 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 A 167 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 A 167 LEU ASP ILE LEU ASP THR ALA ALA GLN GLU GLU TYR SER SEQRES 6 A 167 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 A 167 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 A 167 ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 A 167 ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 A 167 CSO ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN ALA SEQRES 11 A 167 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE GLU SEQRES 12 A 167 THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA PHE SEQRES 13 A 167 TYR THR LEU VAL ARG GLU ILE ARG GLN HIS LYS MODRES 1XCM CSO A 118 CYS S-HYDROXYCYSTEINE HET CSO A 118 9 HET MG A 171 1 HET MG A 172 1 HET GNP A 170 32 HETNAM CSO S-HYDROXYCYSTEINE HETNAM MG MAGNESIUM ION HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER FORMUL 1 CSO C3 H7 N O3 S FORMUL 2 MG 2(MG 2+) FORMUL 4 GNP C10 H17 N6 O13 P3 FORMUL 5 HOH *113(H2 O) HELIX 1 1 GLY A 15 GLN A 25 1 11 HELIX 2 2 MET A 67 GLY A 75 1 9 HELIX 3 3 ASN A 86 ASP A 92 1 7 HELIX 4 4 ASP A 92 ASP A 105 1 14 HELIX 5 5 GLU A 126 TYR A 137 1 12 HELIX 6 6 GLY A 151 LYS A 167 1 17 SHEET 1 A 6 ASP A 38 ILE A 46 0 SHEET 2 A 6 GLU A 49 ASP A 57 -1 O CYS A 51 N VAL A 44 SHEET 3 A 6 THR A 2 GLY A 10 1 N LEU A 6 O ASP A 54 SHEET 4 A 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 A 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 A 6 TYR A 141 THR A 144 1 O ILE A 142 N LEU A 113 LINK C LYS A 117 N CSO A 118 1555 1555 1.34 LINK C CSO A 118 N ASP A 119 1555 1555 1.33 LINK OG SER A 17 MG MG A 171 1555 1555 2.03 LINK O2B GNP A 170 MG MG A 171 1555 1555 2.00 LINK O2G GNP A 170 MG MG A 171 1555 1555 2.05 LINK MG MG A 171 O HOH A 184 1555 1555 2.14 LINK MG MG A 171 O HOH A 233 1555 1555 2.07 LINK MG MG A 171 O HOH A 234 1555 1555 2.15 LINK MG MG A 172 O HOH A 253 1555 1555 2.22 LINK MG MG A 172 O HOH A 253 1555 4556 2.22 SITE 1 AC1 5 SER A 17 GNP A 170 HOH A 184 HOH A 233 SITE 2 AC1 5 HOH A 234 SITE 1 AC2 1 HOH A 253 SITE 1 AC3 24 GLY A 12 GLY A 13 VAL A 14 GLY A 15 SITE 2 AC3 24 LYS A 16 SER A 17 ALA A 18 ASN A 116 SITE 3 AC3 24 LYS A 117 ASP A 119 LEU A 120 SER A 145 SITE 4 AC3 24 ALA A 146 LYS A 147 MG A 171 HOH A 184 SITE 5 AC3 24 HOH A 187 HOH A 196 HOH A 230 HOH A 233 SITE 6 AC3 24 HOH A 234 HOH A 252 HOH A 272 HOH A 276 CRYST1 34.292 81.419 121.302 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029161 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012282 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008244 0.00000